prot_S-dermatodea_contig853.16699.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig853.16699.1
Unique Nameprot_S-dermatodea_contig853.16699.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length109
Homology
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: D7G5N9_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N9_ECTSI)

HSP 1 Score: 233 bits (594), Expect = 6.710e-78
Identity = 103/108 (95.37%), Postives = 105/108 (97.22%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            MLFCPTDG+LLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKI LKKKAVDDIMGG+DAWANVDKTQ TCPFCNNKEAFFLMVQLRSADEPMTCFYKCT CKQRWKE
Sbjct:    1 MLFCPTDGSLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIALKKKAVDDIMGGDDAWANVDKTQTTCPFCNNKEAFFLMVQLRSADEPMTCFYKCTNCKQRWKE 108          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A836CB68_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB68_9STRA)

HSP 1 Score: 145 bits (365), Expect = 6.350e-43
Identity = 64/112 (57.14%), Postives = 77/112 (68.75%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNN----KEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            MLFCPT GNLLMVE+  +G  RF CQTCPY+HP+    K+T+ + L++K VDD++GG DAW NVDK    C  C +    KEA+F   QLRSADEPMT FYKC  C  RW E
Sbjct:    1 MLFCPTCGNLLMVEAATRGGQRFACQTCPYVHPLGQGGKVTKALTLQRKEVDDVLGGADAWVNVDKAPVACADCKDPGKGKEAYFFQAQLRSADEPMTVFYKCVDCGFRWNE 112          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A024UTD8_9STRA (DNA-directed RNA polymerase subunit n=8 Tax=Saprolegniaceae TaxID=4764 RepID=A0A024UTD8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.550e-41
Identity = 60/108 (55.56%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            M FCPT GNLLMVE    G  RFCCQTCPYI+ +  + K+  K+ L++K VDD++GG++AW NVD+T   CPFC + +A+F+ +Q+RSADEP T FYKCT CK++W +
Sbjct:    1 MHFCPTCGNLLMVEPDSDGM-RFCCQTCPYIYKI--NQKVETKVPLQRKKVDDVLGGDEAWENVDQTDTRCPFCEHTKAYFMQIQIRSADEPSTTFYKCTGCKKQWND 105          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: W7TK62_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TK62_9STRA)

HSP 1 Score: 138 bits (348), Expect = 2.050e-40
Identity = 62/106 (58.49%), Postives = 79/106 (74.53%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRW 106
            M FCP   NLL+VE G Q + RFCCQTCPYI  +  + KI++ + LK+K VDD++GGEDAWA  D+T   CPFC++ EAFF+ +Q+RSADEPMT FY+CT C  RW
Sbjct:    1 MKFCPICSNLLLVELGEQNF-RFCCQTCPYISVI--TKKISKTMKLKRKEVDDVLGGEDAWAAADRTTTACPFCDSMEAFFVQMQIRSADEPMTTFYRCTLCANRW 103          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A058ZBP1_FONAL (DNA-directed RNA polymerase subunit n=1 Tax=Fonticula alba TaxID=691883 RepID=A0A058ZBP1_FONAL)

HSP 1 Score: 136 bits (343), Expect = 1.300e-39
Identity = 59/110 (53.64%), Postives = 82/110 (74.55%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQ--GWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            MLFCP  GN+L+V S     G  +F CQTCPY+H ++   KI+ +I+LK+K VDD++GGE +W NVD T+  CP C+N+ A+F+ +Q+RSADEPM+ FYKCTKC  +W+E
Sbjct:    1 MLFCPGCGNVLLVNSDASDIGDFQFACQTCPYVHSIKR--KISSRIILKRKEVDDVLGGEGSWDNVDSTEVPCPKCDNRRAYFMQIQIRSADEPMSTFYKCTKCAAQWRE 108          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A1Y1IMC9_KLENI (DNA-directed RNA polymerase subunit n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMC9_KLENI)

HSP 1 Score: 134 bits (338), Expect = 7.490e-39
Identity = 60/110 (54.55%), Postives = 80/110 (72.73%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTK--CKQRWKE 108
            M FCPT  NLL+VE G  G  R+ CQTCPY++ ++   K+  K+ L +K VDD++GGE+AW NVDKT+ATCP C   EA+F+ +Q+RSADEPM+ FYKC K  C  +W+E
Sbjct:    1 MDFCPTCANLLLVEGGNMGELRYFCQTCPYVYTIKA--KMKNKLPLARKEVDDVLGGEEAWRNVDKTEATCPKCRYGEAYFMQIQIRSADEPMSTFYKCCKPECSHQWRE 108          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A7S0RJ62_9CHLO (DNA-directed RNA polymerase subunit n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RJ62_9CHLO)

HSP 1 Score: 134 bits (337), Expect = 1.000e-38
Identity = 59/108 (54.63%), Postives = 80/108 (74.07%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            M FCPT G LLMVE       R+ CQTCPY++ ++   KI ++ VL+ K VDD++GG++AWANVD+T+ +CP C++ +A+F+ VQ RSADEPMT FYKC KC  RWK+
Sbjct:    2 MTFCPTCGTLLMVEYCELTRLRYACQTCPYVYMIDR--KIVKEHVLETKEVDDVLGGDEAWANVDRTEVSCPKCDHGQAYFMQVQTRSADEPMTIFYKCCKCANRWKD 107          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A077ZVQ1_STYLE (DNA-directed RNA polymerase subunit n=2 Tax=Oxytrichidae TaxID=57506 RepID=A0A077ZVQ1_STYLE)

HSP 1 Score: 133 bits (334), Expect = 2.780e-38
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            MLFCPT  NLL++E     + RF C+TCPY+  +E +    +K+ L++K VDD++GG++AW NVD+ +A CP CNNK A+F+ +Q+RSADEPMT FYKCT+C  +W+E
Sbjct:    1 MLFCPTCANLLLIEKTHSDF-RFFCKTCPYVFVVEQN--FEKKMQLERKEVDDVLGGKEAWENVDQIEAQCPKCNNKRAYFMQIQIRSADEPMTTFYKCTQCSYQWRE 105          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A6G0XP80_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XP80_9STRA)

HSP 1 Score: 133 bits (334), Expect = 4.380e-38
Identity = 61/123 (49.59%), Postives = 82/123 (66.67%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQ---------------ATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            M FCPT GNLLMVE    G  RFCCQTCPYI+ +E   K+ +K+ L++K VDD++GG+ AW NVD+T+               A CPFC + +A+F+ +Q+RSADEP T FYKC  CK++W +
Sbjct:    1 MHFCPTCGNLLMVEPDTDGM-RFCCQTCPYIYKIE--SKVQKKVPLQRKQVDDVLGGDQAWENVDQTESLTSFVALYLMFSSVARCPFCQHDKAYFMQIQIRSADEPSTTFYKCVACKKQWND 120          
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Match: A0A7S0PIB0_CAFRO (DNA-directed RNA polymerase subunit n=2 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PIB0_CAFRO)

HSP 1 Score: 132 bits (332), Expect = 8.300e-38
Identity = 58/108 (53.70%), Postives = 77/108 (71.30%), Query Frame = 0
Query:    1 MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKAVDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCTKCKQRWKE 108
            MLFCPT GN+L++E G    T+F C TCPYI  +  + KIT+ I L++K VDD++GG  AW NVD+T A CP C ++ A+F+ +Q+RSADEPMT FYKC  C  RW +
Sbjct:   16 MLFCPTCGNMLLIEGG--AGTKFFCTTCPYIQRV--TTKITKSITLERKTVDDVLGGAAAWENVDQTDALCPACGHRRAYFMQLQIRSADEPMTTFYKCVACSGRWND 119          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig853.16699.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5N9_ECTSI6.710e-7895.37DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A836CB68_9STRA6.350e-4357.14DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A024UTD8_9STRA3.550e-4155.56DNA-directed RNA polymerase subunit n=8 Tax=Saprol... [more]
W7TK62_9STRA2.050e-4058.49DNA-directed RNA polymerase subunit n=2 Tax=Nannoc... [more]
A0A058ZBP1_FONAL1.300e-3953.64DNA-directed RNA polymerase subunit n=1 Tax=Fontic... [more]
A0A1Y1IMC9_KLENI7.490e-3954.55DNA-directed RNA polymerase subunit n=1 Tax=Klebso... [more]
A0A7S0RJ62_9CHLO1.000e-3854.63DNA-directed RNA polymerase subunit n=1 Tax=Pyrami... [more]
A0A077ZVQ1_STYLE2.780e-3852.78DNA-directed RNA polymerase subunit n=2 Tax=Oxytri... [more]
A0A6G0XP80_9STRA4.380e-3849.59DNA-directed RNA polymerase subunit n=1 Tax=Aphano... [more]
A0A7S0PIB0_CAFRO8.300e-3853.70DNA-directed RNA polymerase subunit n=2 Tax=Cafete... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001529DNA-directed RNA polymerase, M/15kDa subunitSMARTSM00661rpol9cneucoord: 2..54
e-value: 3.4E-5
score: 33.3
IPR001529DNA-directed RNA polymerase, M/15kDa subunitPFAMPF02150RNA_POL_M_15KDcoord: 1..35
e-value: 1.1E-7
score: 31.6
IPR001222Zinc finger, TFIIS-typeSMARTSM00440Cys4_2coord: 69..108
e-value: 1.0E-18
score: 78.2
IPR001222Zinc finger, TFIIS-typePFAMPF01096TFIIS_Ccoord: 69..107
e-value: 3.2E-18
score: 65.3
IPR001222Zinc finger, TFIIS-typePROSITEPS00466ZF_TFIIS_1coord: 71..106
IPR001222Zinc finger, TFIIS-typePROSITEPS51133ZF_TFIIS_2coord: 67..107
score: 14.013
NoneNo IPR availableGENE3D2.20.25.10coord: 57..108
e-value: 1.1E-20
score: 74.7
NoneNo IPR availablePANTHERPTHR11239DNA-DIRECTED RNA POLYMERASEcoord: 1..107
NoneNo IPR availablePANTHERPTHR11239:SF12DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC10coord: 1..107
NoneNo IPR availableSUPERFAMILY57783Zinc beta-ribboncoord: 48..108
IPR012164DNA-directed RNA polymerase subunit/transcription factor SPIRSFPIRSF005586RNApol_RpoMcoord: 1..108
e-value: 4.5E-29
score: 99.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig853contigS-dermatodea_contig853:13686..15082 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig853.16699.1mRNA_S-dermatodea_contig853.16699.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig853 10231..15129 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig853.16699.1 ID=prot_S-dermatodea_contig853.16699.1|Name=mRNA_S-dermatodea_contig853.16699.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=109bp
MLFCPTDGNLLMVESGPQGWTRFCCQTCPYIHPMEPSDKITRKIVLKKKA
VDDIMGGEDAWANVDKTQATCPFCNNKEAFFLMVQLRSADEPMTCFYKCT
KCKQRWKE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001529DNA-dir_RNA_pol_M/15kDasu
IPR001222Znf_TFIIS
IPR012164Rpa12/Rpb9/Rpc10/TFS