mRNA_S-dermatodea_contig85203.16694.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85203.16694.1
Unique NamemRNA_S-dermatodea_contig85203.16694.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 6.120e-51
Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = 1
Query:    1 NNAMIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 420
            NN ++  DIEW+IS +G+P NPPAT+Q AAG  VV+  VLHGQR  P ELP  +  LLED  LT  GVGIKGDCTR+ +F+GV VA+AVDL +LA  RKV +G +RGLADLC HLLG++L KDP VRLSKWN+ +LS DQ
Sbjct:  250 NNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQ 389          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 2.010e-17
Identity = 46/142 (32.39%), Postives = 82/142 (57.75%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRH---SPKELPSVVAALLED-EALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G D EW+ +L G+  NP +TLQ +  +       LH + +   +   +P V+ +LLE+  +  + GV +  D + ++ ++GV VAN +D+ T A+   V   + R LA + S L+G+ L KDP +RLS+W+   L+ +Q+
Sbjct:  154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSS-RSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQV 294          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO)

HSP 1 Score: 82.0 bits (201), Expect = 1.590e-16
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   10 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G D EW  + S G+  NP A +Q   G   +V  +LH        +P  +A  L D    F GVG+ GD  R+ +  G+ VA+AVDL  LA  R      K+ GLA L + ++   + K   VR+S+W+R++L+ DQI
Sbjct:   53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 187          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: I3SWT4_LOTJA (3'-5' exonuclease domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SWT4_LOTJA)

HSP 1 Score: 81.3 bits (199), Expect = 2.960e-16
Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G DIEW  +      NP A LQ    +  +V Q++H        +P  +++ L +   TF GVGI+GD  ++      TVANAVDL TLA ++   P   K GL  L   +LG  + K   +  SKW+ + LS +Q+
Sbjct:   51 IVGLDIEWRPNTQAFKNNPVALLQLCVDHRCLVFQIIHAP-----SIPDSLSSFLSNPQHTFVGVGIQGDVDKLLKDRSFTVANAVDLRTLAAEVYGDPEMMKAGLKALTQRVLGMNVEKPKKISTSKWDDRYLSVEQV 184          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: UPI00190061BD (Werner Syndrome-like exonuclease isoform X1 n=2 Tax=Benincasa hispida TaxID=102211 RepID=UPI00190061BD)

HSP 1 Score: 79.7 bits (195), Expect = 1.310e-15
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 420
            M+G DIEW  + + S  NP ATLQ   G   ++LQ++H       E+P  +   LE+E+LTF GVGI  D  +++  +G+ V   VDL  LA+        K  GL  L   +LG+ + K  +V +S+W+++ L+ +Q
Sbjct:   55 MVGLDIEWRPN-NRSYDNPVATLQLCMGRRCLILQLIH-----TPEIPKSLFEFLENESLTFVGVGIDEDAEKLNCDYGLKVGKRVDLRNLAESVTGRRDLKNAGLKRLGKEVLGKEIHKPKSVTMSRWDQEWLTLNQ 186          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO)

HSP 1 Score: 82.0 bits (201), Expect = 1.480e-15
Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   10 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G D EW  + S G+  NP A +Q   G   +V  +LH        +P  +A  L D    F GVG+ GD  R+ +  G+ VA+AVDL  LA  R      K+ GLA L + ++   + K   VR+S+W+R++L+ DQI
Sbjct:  252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 386          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A8K0NE54_COCNU (Werner Syndrome-like exonuclease n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0NE54_COCNU)

HSP 1 Score: 79.3 bits (194), Expect = 1.650e-15
Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G D+EW  S S   QNP A LQ   G   +V  +LH        +P+ +   L D+  TF GVGI GD  R+ +   +++ +  DL  LA +    P   ++GLA L   +LG  + K   V +S+W+R++L+ +QI
Sbjct:   53 IVGLDLEWRPSNSRF-QNPVAVLQLCVGRRCLVFLLLHADY-----VPNALLNFLADDRFTFVGVGIDGDVERLSDDHDISIGHTTDLRCLAAEKMNRPELNQKGLARLAEEVLGVEVRKPRHVTMSRWDRRDLTWEQI 185          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6J1J8Y2_CUCMA (Werner Syndrome-like exonuclease n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J8Y2_CUCMA)

HSP 1 Score: 79.0 bits (193), Expect = 2.400e-15
Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            ++G DIEW  + S S +NP ATLQ   G+  +++Q+++       E P  +   LE+E+++F GVGI+ D  +++  +G+ V   VDL  LA+        K  GL  L   +LG+ + K   V +S+W+++ L+ +QI
Sbjct:   55 VVGLDIEWRPN-SRSYENPVATLQLCTGSRCLIMQLIY-----TPEFPISLYEFLENESISFVGVGIEDDAEKLNCDYGLKVRKTVDLRNLAERVTGRRELKNAGLKSLAKEILGKEIRKPRGVTMSRWDQEWLTHNQI 187          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A811NZH5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NZH5_9POAL)

HSP 1 Score: 77.8 bits (190), Expect = 6.370e-15
Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1
Query:    1 NNAMIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRK-VPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            N  ++G D+EW  S+S     P A LQ   G   +V ++LH        +P  +   L DE  T  GVG+  D  ++ + +G+ V   VDL TLA      P     GL  L   ++G R+ K   VR+S W+ ++L+ DQ+
Sbjct:   49 NRLVVGIDVEWRPSMSKGHVPPVALLQICVGRRCLVFKILHADY-----IPESLCDFLADERFTIVGVGVLDDAAKLRSGYGLKVGRMVDLRTLAATTLGKPALRGAGLQTLVFEVMGVRMEKPHHVRVSAWDARKLTYDQL 185          
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A5A7R5L9_STRAF (Polynucleotidyl transferase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R5L9_STRAF)

HSP 1 Score: 76.3 bits (186), Expect = 3.200e-14
Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 1
Query:   10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRI--DNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
            M+G D+EW  +    P NP ATLQ +AG   ++ Q++H    SP   P  +A  L      F GVG+K D  ++  D+  G T A  VDL  LA         K+ GL +L   +LG  + K  AV++S W+ + LSP+Q+
Sbjct:   65 MVGLDVEWRPNRPSRPDNPAATLQISAGRFCLIYQLIH----SPY-FPLHLAQFLSCYGHDFVGVGVKSDLEKLWRDHRMGYT-AIPVDLRGLAADVYGSTNLKKAGLQELARTVLGTEMEKPKAVKMSAWDNRCLSPEQV 199          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JET4_9PHAE6.120e-5162.863'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6H5JCK3_9PHAE2.010e-1732.393'-5' exonuclease domain-containing protein n=1 Ta... [more]
A0A6P5EXU7_ANACO1.590e-1635.71Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
I3SWT4_LOTJA2.960e-1634.533'-5' exonuclease domain-containing protein n=1 Ta... [more]
UPI00190061BD1.310e-1535.51Werner Syndrome-like exonuclease isoform X1 n=2 Ta... [more]
A0A199VKE8_ANACO1.480e-1535.71Werner Syndrome-like exonuclease n=1 Tax=Ananas co... [more]
A0A8K0NE54_COCNU1.650e-1533.81Werner Syndrome-like exonuclease n=1 Tax=Cocos nuc... [more]
A0A6J1J8Y2_CUCMA2.400e-1533.09Werner Syndrome-like exonuclease n=3 Tax=Cucurbita... [more]
A0A811NZH5_9POAL6.370e-1532.39Hypothetical protein n=1 Tax=Miscanthus lutariorip... [more]
A0A5A7R5L9_STRAF3.200e-1436.17Polynucleotidyl transferase n=1 Tax=Striga asiatic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85203contigS-dermatodea_contig85203:215..643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score90.5
Seed ortholog evalue6.7e-16
Seed eggNOG ortholog981085.XP_010111221.1
KEGG koko:K20777
GOsGO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0006139,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0034641,GO:0043170,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:1901360
EggNOG free text desc.Werner Syndrome-like
EggNOG OGs37U7J@33090,3GIS0@35493,4JVWJ@91835,KOG4373@1,KOG4373@2759
EC3.1.11.1
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size429
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.4332983-CDS-S-dermatodea_contig85203:214..6341622925349.4332983-CDS-S-dermatodea_contig85203:214..634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85203 215..634 -
1694079873.371275-CDS-S-dermatodea_contig85203:214..6341694079873.371275-CDS-S-dermatodea_contig85203:214..634Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85203 215..634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.4493577-UTR-S-dermatodea_contig85203:634..6431622925349.4493577-UTR-S-dermatodea_contig85203:634..643Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85203 635..643 -
1694079873.3826764-UTR-S-dermatodea_contig85203:634..6431694079873.3826764-UTR-S-dermatodea_contig85203:634..643Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig85203 635..643 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85203.16694.1prot_S-dermatodea_contig85203.16694.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85203 215..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85203.16694.1

>prot_S-dermatodea_contig85203.16694.1 ID=prot_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp
MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSV
VAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVG
TKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQIS*
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mRNA from alignment at S-dermatodea_contig85203:215..643-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85203.16694.1 ID=mRNA_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig85203:215..643- (Saccorhiza dermatodea SderLu1190fm monoicous)
AACAACGCTATGATCGGCTTCGACATCGAATGGGATATCTCGCTTAGTGG TTCCCCTCAGAACCCCCCTGCGACTCTCCAATTTGCAGCCGGCAACTGCG TCGTGGTTCTGCAAGTCTTGCACGGCCAGAGGCATTCGCCGAAGGAGCTC CCGTCTGTCGTGGCCGCCCTTCTCGAGGACGAGGCGCTGACCTTCGCGGG CGTCGGCATCAAGGGTGACTGCACCAGGATCGACAACTTCTTCGGCGTTA CAGTGGCGAACGCGGTTGACTTGGTCACGCTGGCCCAGATGCGCAAGGTG CCTGTAGGAACCAAACGAGGCCTGGCTGATCTGTGCTCCCACCTGCTCGG CAGGCGCCTGTTAAAGGACCCCGCCGTCAGGCTTTCGAAGTGGAACCGGA AAGAGCTCTCTCCTGACCAGATATCGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig85203:215..643-

>mRNA_S-dermatodea_contig85203.16694.1 ID=mRNA_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig85203:215..643- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATCGGCTTCGACATCGAATGGGATATCTCGCTTAGTGGTTCCCCTCA
GAACCCCCCTGCGACTCTCCAATTTGCAGCCGGCAACTGCGTCGTGGTTC
TGCAAGTCTTGCACGGCCAGAGGCATTCGCCGAAGGAGCTCCCGTCTGTC
GTGGCCGCCCTTCTCGAGGACGAGGCGCTGACCTTCGCGGGCGTCGGCAT
CAAGGGTGACTGCACCAGGATCGACAACTTCTTCGGCGTTACAGTGGCGA
ACGCGGTTGACTTGGTCACGCTGGCCCAGATGCGCAAGGTGCCTGTAGGA
ACCAAACGAGGCCTGGCTGATCTGTGCTCCCACCTGCTCGGCAGGCGCCT
GTTAAAGGACCCCGCCGTCAGGCTTTCGAAGTGGAACCGGAAAGAGCTCT
CTCCTGACCAGATATCGTAAATGATCGGCTTCGACATCGAATGGGATATC
TCGCTTAGTGGTTCCCCTCAGAACCCCCCTGCGACTCTCCAATTTGCAGC
CGGCAACTGCGTCGTGGTTCTGCAAGTCTTGCACGGCCAGAGGCATTCGC
CGAAGGAGCTCCCGTCTGTCGTGGCCGCCCTTCTCGAGGACGAGGCGCTG
ACCTTCGCGGGCGTCGGCATCAAGGGTGACTGCACCAGGATCGACAACTT
CTTCGGCGTTACAGTGGCGAACGCGGTTGACTTGGTCACGCTGGCCCAGA
TGCGCAAGGTGCCTGTAGGAACCAAACGAGGCCTGGCTGATCTGTGCTCC
CACCTGCTCGGCAGGCGCCTGTTAAAGGACCCCGCCGTCAGGCTTTCGAA
GTGGAACCGGAAAGAGCTCTCTCCTGACCAGATATCGTAA
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