mRNA_S-dermatodea_contig85203.16694.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JET4_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JET4_9PHAE) HSP 1 Score: 183 bits (465), Expect = 6.120e-51 Identity = 88/140 (62.86%), Postives = 107/140 (76.43%), Query Frame = 1
Query: 1 NNAMIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 420
NN ++ DIEW+IS +G+P NPPAT+Q AAG VV+ VLHGQR P ELP + LLED LT GVGIKGDCTR+ +F+GV VA+AVDL +LA RKV +G +RGLADLC HLLG++L KDP VRLSKWN+ +LS DQ
Sbjct: 250 NNGLLALDIEWEISAAGAPANPPATIQLAAGKRVVIFHVLHGQRSVPAELPDPLVDLLEDTKLTKTGVGIKGDCTRLTSFYGVEVAHAVDLRSLAVERKVELGLRRGLADLCVHLLGQQLPKDPTVRLSKWNKLDLSDDQ 389
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6H5JCK3_9PHAE (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK3_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 2.010e-17 Identity = 46/142 (32.39%), Postives = 82/142 (57.75%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRH---SPKELPSVVAALLED-EALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G D EW+ +L G+ NP +TLQ + + LH + + + +P V+ +LLE+ + + GV + D + ++ ++GV VAN +D+ T A+ V + R LA + S L+G+ L KDP +RLS+W+ L+ +Q+
Sbjct: 154 VLGLDCEWEPALGGATPNPVSTLQLSLPDGTAYCFHLHRRTNRATATSTIPKVLQSLLENVPSQRYVGVNVNSDASLLERYYGVKVANMIDVRTHARECWVETSS-RSLAGMASSLVGKALPKDPTIRLSRWSNPSLTDEQV 294
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6P5EXU7_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A6P5EXU7_ANACO) HSP 1 Score: 82.0 bits (201), Expect = 1.590e-16 Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query: 10 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G D EW + S G+ NP A +Q G +V +LH +P +A L D F GVG+ GD R+ + G+ VA+AVDL LA R K+ GLA L + ++ + K VR+S+W+R++L+ DQI
Sbjct: 53 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 187
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: I3SWT4_LOTJA (3'-5' exonuclease domain-containing protein n=1 Tax=Lotus japonicus TaxID=34305 RepID=I3SWT4_LOTJA) HSP 1 Score: 81.3 bits (199), Expect = 2.960e-16 Identity = 48/139 (34.53%), Postives = 72/139 (51.80%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G DIEW + NP A LQ + +V Q++H +P +++ L + TF GVGI+GD ++ TVANAVDL TLA ++ P K GL L +LG + K + SKW+ + LS +Q+
Sbjct: 51 IVGLDIEWRPNTQAFKNNPVALLQLCVDHRCLVFQIIHAP-----SIPDSLSSFLSNPQHTFVGVGIQGDVDKLLKDRSFTVANAVDLRTLAAEVYGDPEMMKAGLKALTQRVLGMNVEKPKKISTSKWDDRYLSVEQV 184
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: UPI00190061BD (Werner Syndrome-like exonuclease isoform X1 n=2 Tax=Benincasa hispida TaxID=102211 RepID=UPI00190061BD) HSP 1 Score: 79.7 bits (195), Expect = 1.310e-15 Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQ 420
M+G DIEW + + S NP ATLQ G ++LQ++H E+P + LE+E+LTF GVGI D +++ +G+ V VDL LA+ K GL L +LG+ + K +V +S+W+++ L+ +Q
Sbjct: 55 MVGLDIEWRPN-NRSYDNPVATLQLCMGRRCLILQLIH-----TPEIPKSLFEFLENESLTFVGVGIDEDAEKLNCDYGLKVGKRVDLRNLAESVTGRRDLKNAGLKRLGKEVLGKEIHKPKSVTMSRWDQEWLTLNQ 186
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A199VKE8_ANACO (Werner Syndrome-like exonuclease n=1 Tax=Ananas comosus TaxID=4615 RepID=A0A199VKE8_ANACO) HSP 1 Score: 82.0 bits (201), Expect = 1.480e-15 Identity = 50/140 (35.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query: 10 MIGFDIEWDISLS-GSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G D EW + S G+ NP A +Q G +V +LH +P +A L D F GVG+ GD R+ + G+ VA+AVDL LA R K+ GLA L + ++ + K VR+S+W+R++L+ DQI
Sbjct: 252 VVGLDAEWRPNFSAGAAPNPVALVQLCVGRRCLVFSLLHADY-----VPLALANFLADTRFAFVGVGVAGDAERLADECGLPVADAVDLRDLAAERTGRRQLKQMGLAGLAAEIMEVEVRKPSRVRMSRWDRRDLTLDQI 386
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A8K0NE54_COCNU (Werner Syndrome-like exonuclease n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0NE54_COCNU) HSP 1 Score: 79.3 bits (194), Expect = 1.650e-15 Identity = 47/139 (33.81%), Postives = 74/139 (53.24%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLA-QMRKVPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G D+EW S S QNP A LQ G +V +LH +P+ + L D+ TF GVGI GD R+ + +++ + DL LA + P ++GLA L +LG + K V +S+W+R++L+ +QI
Sbjct: 53 IVGLDLEWRPSNSRF-QNPVAVLQLCVGRRCLVFLLLHADY-----VPNALLNFLADDRFTFVGVGIDGDVERLSDDHDISIGHTTDLRCLAAEKMNRPELNQKGLARLAEEVLGVEVRKPRHVTMSRWDRRDLTWEQI 185
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A6J1J8Y2_CUCMA (Werner Syndrome-like exonuclease n=3 Tax=Cucurbita TaxID=3660 RepID=A0A6J1J8Y2_CUCMA) HSP 1 Score: 79.0 bits (193), Expect = 2.400e-15 Identity = 46/139 (33.09%), Postives = 79/139 (56.83%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
++G DIEW + S S +NP ATLQ G+ +++Q+++ E P + LE+E+++F GVGI+ D +++ +G+ V VDL LA+ K GL L +LG+ + K V +S+W+++ L+ +QI
Sbjct: 55 VVGLDIEWRPN-SRSYENPVATLQLCTGSRCLIMQLIY-----TPEFPISLYEFLENESISFVGVGIEDDAEKLNCDYGLKVRKTVDLRNLAERVTGRRELKNAGLKSLAKEILGKEIRKPRGVTMSRWDQEWLTHNQI 187
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A811NZH5_9POAL (Hypothetical protein n=1 Tax=Miscanthus lutarioriparius TaxID=422564 RepID=A0A811NZH5_9POAL) HSP 1 Score: 77.8 bits (190), Expect = 6.370e-15 Identity = 46/142 (32.39%), Postives = 70/142 (49.30%), Query Frame = 1
Query: 1 NNAMIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRIDNFFGVTVANAVDLVTLAQMRK-VPVGTKRGLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
N ++G D+EW S+S P A LQ G +V ++LH +P + L DE T GVG+ D ++ + +G+ V VDL TLA P GL L ++G R+ K VR+S W+ ++L+ DQ+
Sbjct: 49 NRLVVGIDVEWRPSMSKGHVPPVALLQICVGRRCLVFKILHADY-----IPESLCDFLADERFTIVGVGVLDDAAKLRSGYGLKVGRMVDLRTLAATTLGKPALRGAGLQTLVFEVMGVRMEKPHHVRVSAWDARKLTYDQL 185
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Match: A0A5A7R5L9_STRAF (Polynucleotidyl transferase n=1 Tax=Striga asiatica TaxID=4170 RepID=A0A5A7R5L9_STRAF) HSP 1 Score: 76.3 bits (186), Expect = 3.200e-14 Identity = 51/141 (36.17%), Postives = 74/141 (52.48%), Query Frame = 1
Query: 10 MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVVAALLEDEALTFAGVGIKGDCTRI--DNFFGVTVANAVDLVTLAQMRKVPVGTKR-GLADLCSHLLGRRLLKDPAVRLSKWNRKELSPDQI 423
M+G D+EW + P NP ATLQ +AG ++ Q++H SP P +A L F GVG+K D ++ D+ G T A VDL LA K+ GL +L +LG + K AV++S W+ + LSP+Q+
Sbjct: 65 MVGLDVEWRPNRPSRPDNPAATLQISAGRFCLIYQLIH----SPY-FPLHLAQFLSCYGHDFVGVGVKSDLEKLWRDHRMGYT-AIPVDLRGLAADVYGSTNLKKAGLQELARTVLGTEMEKPKAVKMSAWDNRCLSPEQV 199 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85203.16694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig85203.16694.1 >prot_S-dermatodea_contig85203.16694.1 ID=prot_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=140bp MIGFDIEWDISLSGSPQNPPATLQFAAGNCVVVLQVLHGQRHSPKELPSVback to top mRNA from alignment at S-dermatodea_contig85203:215..643- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig85203.16694.1 ID=mRNA_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=429bp|location=Sequence derived from alignment at S-dermatodea_contig85203:215..643- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig85203:215..643- >mRNA_S-dermatodea_contig85203.16694.1 ID=mRNA_S-dermatodea_contig85203.16694.1|Name=mRNA_S-dermatodea_contig85203.16694.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at S-dermatodea_contig85203:215..643- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |