mRNA_S-dermatodea_contig852.16693.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig852.16693.1
Unique NamemRNA_S-dermatodea_contig852.16693.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A6H5KD56_9PHAE (SufE domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD56_9PHAE)

HSP 1 Score: 399 bits (1025), Expect = 3.350e-131
Identity = 231/320 (72.19%), Postives = 257/320 (80.31%), Query Frame = 1
Query:  100 MSARRVVLSAASLASSICSVGQAFVTPQ-ALQQGGAFSP-RIASHPRRAVPAPT-----RQGRV-AHRMSTSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDGLVYFKSDSDAMITKGLAGLL-SMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXX--EGGKMAARISEKLQKLEPLGLAIEDESGGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEEAGV 1026
            M AR  +LS A L++S+CSVG++FVTP  A+  GGAFS  R A   R   PA       R GR  A  MSTST+LK+LGLTPELERLTKVFRSCP  KMRQMQLLHL QMG+ +DPA  TEENKVLGCLSTVYVAAE KDGL+Y+ +DSDAMITKG A LL +MGLSGN+ EAIQTVKPEFI+VAGLQASL AGRNNGFINMLRTMK KALALGGESA+RAA+E A PAAE        E G MA+R++EKLQKLEPL L IEDESGGEESKF IK+VSKSFEGL LLKRHR VYGL+ADEMKIVHAV+L T TPEEAG+
Sbjct:    1 MVARAAILSVA-LSTSVCSVGESFVTPNVAVVPGGAFSSHRAAQAARSRRPAAXXXXXXRSGRDDAPLMSTSTDLKQLGLTPELERLTKVFRSCPTDKMRQMQLLHLTQMGDKMDPALQTEENKVLGCLSTVYVAAEVKDGLIYYSTDSDAMITKGSARLLLAMGLSGNSPEAIQTVKPEFIQVAGLQASLAAGRNNGFINMLRTMKGKALALGGESAIRAAMEQAAPAAETAAPEEAEESGTMASRVTEKLQKLEPLKLVIEDESGGEESKFMIKIVSKSFEGLTLLKRHRSVYGLMADEMKIVHAVTLDTKTPEEAGM 319          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A836CLM4_9STRA (Cysteine desulfuration protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLM4_9STRA)

HSP 1 Score: 232 bits (591), Expect = 8.120e-67
Identity = 144/259 (55.60%), Postives = 165/259 (63.71%), Query Frame = 1
Query:  280 MSTSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEG---------GK-MAARISEKLQKLEPLGLAIEDESGGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEEAGV 1026
            MST+  ++ELGLT ELERL K FRS P+ KMR  QLL +A  G  L   F T +NKV GCLSTV+V A+ K G VYF+ DSDA +TKGL  +L  GLSGN A  IQ+VKPEFI+VAGLQ SLT GRNNGFINML TMK KAL                    XXX   EG         GK M   I  KLQ L P+ L +EDES  +E KF I VVS +FEGL L+KRH+LV+  IADEMK VHAV L T TP E G+
Sbjct:   61 MSTAPSIQELGLTRELERLVKAFRSMPDDKMRYKQLLFMAAQGAELPSEFKTTDNKVQGCLSTVHVVAKMKQGKVYFEGDSDAQLTKGLLSILIRGLSGNAAADIQSVKPEFIQVAGLQTSLTPGRNNGFINMLSTMKRKALQAEXXXXXXXXXXXXXXXXXXXXADSEGDDMGVAEVPGKPMTTAIMRKLQALRPVRLQVEDESE-DEQKFYIAVVSSAFEGLPLVKRHQLVHLTIADEMKQVHAVQLSTKTPAEMGL 318          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: M2XAG5_GALSU (Cysteine desulfuration protein SufE (Plastid) n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XAG5_GALSU)

HSP 1 Score: 190 bits (482), Expect = 4.800e-51
Identity = 117/258 (45.35%), Postives = 153/258 (59.30%), Query Frame = 1
Query:  301 KELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALA----LGGESALRAAVEHAMPAAEXXXXXXE--GGKMAARISEKLQKLEPLGLAIEDES------------GGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKI-VHAVSLVTNTPEE 1017
            K+LGLTPEL RL K F + P+ K+R  QLL+LAQ  E L   + T ENKV GCLSTV+V  +  +  ++FK DSDA +TKGL  LL  GL+G T E I+ + PEF+ VAGL  SLT GRNNGF+NML+TMK KA      L G S         +P  +      E   G + + I EKLQKL+P  L + D+S               E+ F++ VVS +F GL L+KRH+LVY L+  E+K  +HA+ +   TP E
Sbjct:   66 KKLGLTPELARLVKSFAAAPDPKLRVQQLLYLAQTLEPLPFQYKTNENKVPGCLSTVHVVGDCDNEKIFFKGDSDAQLTKGLLALLIKGLNGCTVEEIERISPEFVTVAGLSVSLTPGRNNGFLNMLQTMKNKAKEAASKLNGVSREGRNYSDRVPKTQASPSTAETASGPIYSAIVEKLQKLKPSRLEVHDDSFQHAGHVGAKGLRSSETHFSVYVVSDAFVGLSLVKRHQLVYTLLGQELKEGLHALRIQAKTPSE 323          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A8J5XHT0_DIALT (SufE domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XHT0_DIALT)

HSP 1 Score: 183 bits (464), Expect = 6.620e-49
Identity = 121/272 (44.49%), Postives = 159/272 (58.46%), Query Frame = 1
Query:  262 GRVAHR---MSTSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEA-KDGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEGGKMAAR---ISEKLQKLEPLGLAIEDESG------------GEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMK-IVHAVSLVTNTPEE 1017
            GRVAH    MS S     LGLTPELE++ +VF+  P+ K+R  QLL LAQ  + +D      ENKV GCLSTV+V A A   G +++  DSDAM+TKGL  LL+ GLSG+TA+ I  V P+FI+ AG+ ASLT GRNNG +NML  MK KA AL G  A+ +    A P+A       EGG        I + L KL+P  + + D S               E+ F ++VVS  F GL L++RH+L+Y L+A+EM   VHA+ +   T  E
Sbjct:   27 GRVAHAGMLMSAS-----LGLTPELEQVVEVFKMVPDQKLRYQQLLFLAQKAKPMDAVLKVPENKVPGCLSTVFVHATADSSGNIFYTGDSDAMLTKGLVVLLTDGLSGHTADEILAVDPKFIQEAGIAASLTPGRNNGLLNMLALMKQKAKALAGV-AVPSGPSAANPSASPPAPVVEGGGAPVADSIIGKVLAKLKPTTVRLRDNSAQHAGHAGREGLAASETHFALEVVSDVFSGLSLVQRHQLIYALLAEEMAGSVHALQITARTTAE 292          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A7S1T9Y1_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1T9Y1_9RHOD)

HSP 1 Score: 181 bits (459), Expect = 3.760e-48
Identity = 116/258 (44.96%), Postives = 151/258 (58.53%), Query Frame = 1
Query:  277 RMSTSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAK-DGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEGGKMAARISEKLQKLEPLGLAIEDES-----------GGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKI-VHAVSLVTNTP 1011
            R+    EL  LGLTPELERLT+ F   P+ KMR  QLL +AQ   ++D + MT ENKV GCLSTVYV A    DG V+   DSDA +TKGL  LL  GL G T E I+ V PEFI+ +GL  SLT GRNNGF+NML  +KAKA A   +S +        P  E      + G +  RI++KL  L+P  L I D+S              E+ F+I++ S +FE L  ++RHR++Y L+A E+   VHA+ +   TP
Sbjct:   40 RVRVRCELDALGLTPELERLTRQFSMVPDPKMRYQQLLFMAQELPSMDTSLMTSENKVPGCLSTVYVHASRNGDGTVHLVGDSDAQLTKGLIALLIQGLDGKTVEEIERVSPEFIQASGLAVSLTPGRNNGFLNMLAKIKAKARACI-DSPVEVLSATPDPVVERNIPP-DAGPIYRRIAQKLSVLKPTELVISDKSKQHSGHPGNLQAKTETHFSIRIRSTAFEPLTPVQRHRVIYTLLAQELNDGVHALQIDAQTP 295          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A7S4I3L9_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I3L9_9STRA)

HSP 1 Score: 181 bits (459), Expect = 1.560e-47
Identity = 120/270 (44.44%), Postives = 153/270 (56.67%), Query Frame = 1
Query:  289 STELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAA------EAKDGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRA-----AVEHAMP--AAEXXXXXXEGGKMAARISEKLQK-LEPLGLAIEDES----------GGEES---KFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEE 1017
            +T    LGLTPEL R+T  F S P+ KMR  QLL +A    A+ P  M  ENKV GCLSTVYV A      E  + +V F  +SD ++TKGL  LL  GLSG TAE +Q V PEFI  A +  SLT GRNNGF+NML  MK KA  +GG  A  A     +VE      AA       EG  M   +  KL   L+P  + + D S          G EES    F+I +V+++F+GL L+KRH+LVY L+ D M+ +HA+ +V  TP+E
Sbjct:   76 ATTADPLGLTPELRRMTDAFASIPDEKMRYKQLLFMANQLPAISPDAMVPENKVPGCLSTVYVDAVMERDEERGEDVVKFLGESDGLLTKGLVALLVRGLSGCTAEEVQRVNPEFIHEAKISQSLTPGRNNGFLNMLAVMKKKAAEIGGPEAAAAGDDAGSVEEGEDEVAATLTFEEVEGKPMYNAMMAKLTTMLKPTSIELVDNSDQHAGHAGSKGWEESGESHFSINIVAEAFDGLSLVKRHQLVYMLLGDIMQKIHALQIVARTPDE 345          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A7S3Q629_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q629_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.450e-47
Identity = 113/271 (41.70%), Postives = 157/271 (57.93%), Query Frame = 1
Query:  280 MSTSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDG-----LVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALAL-------GGESALRAAVEHAMPAAEXXXXXXEGGKMAARISEKLQKLEPLGLAIEDESGGE-------------ESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEE 1017
            M+ ++E++ LGLTPELE++TK F S P+ K+R  QLL++A   + LDP  M  ENKV GCLSTVYV   A+D      ++ F  DSD  +TKGL  LL  G+SG TAE IQ V PEFI  A +  SLT GRNNGF+NML  MKAKA +        GGE A  A  E  + + +       G  M   + E L KL+P+ L + D+S                ES F + +V++ F+G+ L+KRH+L+Y ++ + M  +HA+S+    P +
Sbjct:   50 MADTSEIEALGLTPELEKMTKAFGSIPDEKLRYKQLLYMANQLKPLDPKLMVSENKVPGCLSTVYVDCTARDNEEGETVLDFVGDSDGQLTKGLVALLVRGMSGCTAEQIQKVDPEFINAAKITQSLTPGRNNGFLNMLAVMKAKATSYSVGADNSGGEEA-DADTEGVISSFDEIA----GKPMYNDMMESLLKLKPVTLELIDDSASHAGHAGSKGWEESGESHFVLNMVAEVFDGMPLVKRHQLIYLVLGETMDKIHALSINAKAPSQ 315          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A1Z5K9T0_FISSO (SufE domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K9T0_FISSO)

HSP 1 Score: 176 bits (447), Expect = 8.660e-47
Identity = 109/250 (43.60%), Postives = 144/250 (57.60%), Query Frame = 1
Query:  313 LTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYV---AAEAKDGLVY--FKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEGGKMAARISEKLQKLEPLGLAIED----------ESGGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEE 1017
            LTPEL ++   F S  + K+R  QLL++A     +DP+    ENKV GCLSTVYV   A +  DG++   F  DSD ++TKGL  LL  GLSGNTAE IQ V P FI+  G+ ASLT GRNNGF+NML  MK KA        L A  +   P+        +   M   I + LQ L+P+ L +ED           S   E+ FN+++V+ +FEGL L+KRH+LVY L+ D M  +HA+ +   TPEE
Sbjct:   24 LTPELLKIANAFESIGDDKLRYKQLLYMATQLSPIDPSQAIPENKVPGCLSTVYVDGTAVDKGDGVIRIEFVGDSDGLLTKGLVALLVRGLSGNTAEDIQNVDPGFIQKTGIAASLTPGRNNGFLNMLNVMKIKA------KQLEANYQATGPSESATTTAGDEKPMYQAIVQGLQALKPVSLKLEDVSYQHAGHREASKDGETHFNLEIVASAFEGLNLVKRHKLVYMLLGDVMPRIHALQISAKTPEE 267          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A7S2ZLB0_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLB0_9RHOD)

HSP 1 Score: 174 bits (442), Expect = 7.680e-46
Identity = 109/259 (42.08%), Postives = 143/259 (55.21%), Query Frame = 1
Query:  283 STSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDGL--VYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEGGKMAARISEKLQKLEPLGLAIEDES--------GGEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKI----VHAVSLVTNTPEE 1017
            +   E+  L LTP LE++    +  P+SK+R  QLLH A     ++P   TE NKV GCLSTV+V AE       VYFK DSDA +TKGL  +L  GLSG+TA  I+ V P+FIK +GL  SLT GRNNGFINML+ MK KA  L  E+A            +       G   A  I   L +L P+ L +ED S         G+E+   IKVVS++FE + L+ RH+++Y L+   M      VHA+ + T  P E
Sbjct:   32 AADVEMSSLNLTPALEKMVSSLKMFPDSKVRYQQLLHYASTLGPMEPELKTEMNKVPGCLSTVFVHAEMNPDTRKVYFKGDSDAQLTKGLVSMLVNGLSGSTALQIEKVNPDFIKASGLTVSLTPGRNNGFINMLKLMKRKAAVLDEEAAGLGPRSTGQTDEDAVEFEVPGKPRATAIGRALMQLNPIELEVEDFSESHKGHAHAGDETHIRIKVVSEAFEDMPLVLRHKVIYTLLDSFMDKGSGGVHALQMDTKAPGE 290          
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Match: A0A4D9DCV6_9STRA (SufE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DCV6_9STRA)

HSP 1 Score: 172 bits (437), Expect = 6.640e-45
Identity = 110/258 (42.64%), Postives = 149/258 (57.75%), Query Frame = 1
Query:  283 STSTELKELGLTPELERLTKVFRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKDGLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASLTAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEXXXXXXEGGKMAARISEKLQKLEPLGLAIEDESG-----------GEESKFNIKVVSKSFEGLGLLKRHRLVYGLIADEMKIVHAVSLVTNTPEEAG 1023
            ST  +   LGLTP L  +++ F+   + + R   LL LA   + +       ENKV GCLSTVYV A  +DG VYF+ DSDA +TKGL  LL  G+SG +AE IQ VKPEFIK AG+ ASLT GRNNGF+NML  +K KA+    +       E A+   E          M   I+     L+P  L ++D+S            G ES F++++V+  FEGL L++RH+LVY ++A EM+ +HA+S+   TP EAG
Sbjct:   58 STDIDESSLGLTPRLFEVSRAFQLM-DERTRVQNLLALASSMKPMKDFRKLPENKVPGCLSTVYVHAFMQDGKVYFEGDSDAQLTKGLVALLIEGMSGCSAEEIQAVKPEFIKYAGIAASLTPGRNNGFLNMLAMLKRKAVEAESKGEGAGQEEPAVEFQEDIARPVYSSCMKKLIN----FLKPKRLEMQDDSAQHAGHAGAKGLGGESHFSLRIVADCFEGLSLVQRHKLVYTVLAAEMQQIHALSIDAKTPAEAG 310          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig852.16693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD56_9PHAE3.350e-13172.19SufE domain-containing protein n=3 Tax=Ectocarpus ... [more]
A0A836CLM4_9STRA8.120e-6755.60Cysteine desulfuration protein n=1 Tax=Tribonema m... [more]
M2XAG5_GALSU4.800e-5145.35Cysteine desulfuration protein SufE (Plastid) n=1 ... [more]
A0A8J5XHT0_DIALT6.620e-4944.49SufE domain-containing protein n=1 Tax=Diacronema ... [more]
A0A7S1T9Y1_9RHOD3.760e-4844.96Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S4I3L9_9STRA1.560e-4744.44Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S3Q629_9STRA2.450e-4741.70Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5K9T0_FISSO8.660e-4743.60SufE domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2ZLB0_9RHOD7.680e-4642.08Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A4D9DCV6_9STRA6.640e-4542.64SufE domain-containing protein n=2 Tax=Monodopsida... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig852contigS-dermatodea_contig852:20975..24810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score422.9
Seed ortholog evalue1.3e-115
Seed eggNOG ortholog2880.D7G7R0
Preferred namebola1
KEGG koko:K22066
EggNOG free text desc.protein maturation by iron-sulfur cluster transfer
EggNOG OGsCOG0271@1,KOG2313@2759
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioncysteine desulfuration protein
Ec32 orthologEc-06_000700.1
Exons4
Model size2098
Cds size984
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig852.16693.1prot_S-dermatodea_contig852.16693.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig852 22044..24765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.321026-UTR-S-dermatodea_contig852:20974..220431622925349.321026-UTR-S-dermatodea_contig852:20974..22043Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 20975..22043 -
1694079873.3036091-UTR-S-dermatodea_contig852:20974..220431694079873.3036091-UTR-S-dermatodea_contig852:20974..22043Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 20975..22043 -
1622925349.3920202-UTR-S-dermatodea_contig852:24765..248101622925349.3920202-UTR-S-dermatodea_contig852:24765..24810Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 24766..24810 -
1694079873.3611135-UTR-S-dermatodea_contig852:24765..248101694079873.3611135-UTR-S-dermatodea_contig852:24765..24810Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig852 24766..24810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925349.3365526-CDS-S-dermatodea_contig852:22043..222541622925349.3365526-CDS-S-dermatodea_contig852:22043..22254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 22044..22254 -
1694079873.3162668-CDS-S-dermatodea_contig852:22043..222541694079873.3162668-CDS-S-dermatodea_contig852:22043..22254Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 22044..22254 -
1622925349.3504074-CDS-S-dermatodea_contig852:22757..229221622925349.3504074-CDS-S-dermatodea_contig852:22757..22922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 22758..22922 -
1694079873.325948-CDS-S-dermatodea_contig852:22757..229221694079873.325948-CDS-S-dermatodea_contig852:22757..22922Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 22758..22922 -
1622925349.3640337-CDS-S-dermatodea_contig852:23339..235371622925349.3640337-CDS-S-dermatodea_contig852:23339..23537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 23340..23537 -
1694079873.3388975-CDS-S-dermatodea_contig852:23339..235371694079873.3388975-CDS-S-dermatodea_contig852:23339..23537Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 23340..23537 -
1622925349.380173-CDS-S-dermatodea_contig852:24355..247651622925349.380173-CDS-S-dermatodea_contig852:24355..24765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 24356..24765 -
1694079873.3527887-CDS-S-dermatodea_contig852:24355..247651694079873.3527887-CDS-S-dermatodea_contig852:24355..24765Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig852 24356..24765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig852.16693.1

>prot_S-dermatodea_contig852.16693.1 ID=prot_S-dermatodea_contig852.16693.1|Name=mRNA_S-dermatodea_contig852.16693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=328bp
MQHSTCLATADRRAPLFIMSARRVVLSAASLASSICSVGQAFVTPQALQQ
GGAFSPRIASHPRRAVPAPTRQGRVAHRMSTSTELKELGLTPELERLTKV
FRSCPNSKMRQMQLLHLAQMGEALDPAFMTEENKVLGCLSTVYVAAEAKD
GLVYFKSDSDAMITKGLAGLLSMGLSGNTAEAIQTVKPEFIKVAGLQASL
TAGRNNGFINMLRTMKAKALALGGESALRAAVEHAMPAAEEEEEEKEGGK
MAARISEKLQKLEPLGLAIEDESGGEESKFNIKVVSKSFEGLGLLKRHRL
VYGLIADEMKIVHAVSLVTNTPEEAGV*
back to top

mRNA from alignment at S-dermatodea_contig852:20975..24810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig852.16693.1 ID=mRNA_S-dermatodea_contig852.16693.1|Name=mRNA_S-dermatodea_contig852.16693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3836bp|location=Sequence derived from alignment at S-dermatodea_contig852:20975..24810- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTCTTCGCCTTTTGCCATTGTAGTCGCAGCTTCATCGCTCATCGCATGCA ACACAGCACCTGCCTCGCAACAGCAGATAGAAGAGCACCACTCTTCATCA TGAGCGCGAGAAGGGTTGTGTTATCAGCGGCGTCGCTGGCGTCCAGCATC TGCTCTGTTGGCCAAGCGTTTGTCACGCCACAAGCGCTTCAGCAAGGCGG CGCGTTTTCGCCCCGCATAGCCTCGCACCCACGACGGGCGGTGCCAGCAC CAACCCGCCAAGGCCGCGTTGCCCATCGAATGTCGACATCGACCGAGCTC AAGGAGCTGGGCTTGACCCCCGAGCTCGAGCGATTGACGAAGGTCTTCAG GTCGTGCCCCAACAGCAAGATGAGACAAATGCAGCTCCTACACTTGGCGC AAATGGGGGAGGCCTTGGACCCAGCGTTCATGACCGAGGAGAACAAGGTG TTGGGGTGAGCTCAACTTCTCCACCTTCCATACTGCTGTACACCTCTCAT AGATGTGATGTAATCATGTCTTACATACATTGCAGCTACATCTCGATACG CTGCAGCTGCGAGGGCGGTGATCGAGGCCCGGCCGCTCCTGTTGCAGCTT TGTCGCAATCGTTATATTATAGCAGGATTGCATGCGGACATTCTGTTGAT AGATTTTTACAGCTCTACACTGCTGAAAGGGGAGAGTCGTCGGCCGTGGG GTGACACGTCAGCCTCCTTCAAGAGCACAACAAGAGAACCAGACATGTGT ACGAGTATATTCAGGCGACGTTTGCTGCCATGGTAACCGGTTGATTGCAG AGCTTGGCTGTCGCGATCACCCAGATTTGCGTCGCGAGACTGCTGTGAGC TCCCAAAAAAGGGGTGTAGCGTCGACGCCTGCTGCGCCCCTGTCCGCCCG ATTGGCACTTGTCCCCCGTTTGGCACGTGTCACTACCTGATATTTTGTAT TTAACATACTCTGTAGATGTGTAAGAGCATGGTCCTGTGATCTGCATCGC AGCGCTACCGCGGCTATCATTGCCCGCAACTGGCTGTCCTCACATACCGC GGCTCTATTAAACAATCTGATTTTGATATCTCGACAGTCTGCAGCAAACA TGGTATTATCGAAACTCGTGCTGGGTGTACATACTTGCATCATATTATCA GCTGCATCGCATTTCTGGATATACCTCTCTGTGTTTCCCCTGTATTGACG GTCTTCCAACACTACTACATACTGCTGTAGATATGTCGAGGTAACGCCCT GCGCGCGCCGACTCGGTTTCCAGGTGCCTCTCCACTGTGTACGTTGCAGC AGAGGCAAAGGATGGCCTCGTCTACTTCAAATCGGATTCGGACGCGATGA TAACGAAGGGGCTCGCCGGTCTTCTCTCGATGGGGCTTTCAGGGAACACC GCTGAAGCTATCCAGACCGTCAAACCGGAATTCATCAAAGTGGCGGGCCT GCAGGCCAGCCTCACAGCGGGGTGAGTTTGGGACTGCTCGTGCGAGGGTT CGGTAGTGGCACAGGCGGGGGTTTCTCTTATGTTGCGTTAGCGTTGAACT CCACCCACCGTCTTCAGGTATTTCTCTGTATATACAGATGCTGTCGGCGC ATGGCACGAACTATGGTGCTACGATGTATGTGTGGAGTAAGCGCACGGTG ACCTACCCCATGTAAACATCTTGTGTAGACTCGTGAATCGTGAAGGGTCG AGGTACTACTGCGTCGCCAACCTACACAAGACGGTGAAAGCCAAGCTACG CCTCCTCCCATGGTCCGTATAGGCAAGCCGAGATTCAGCCCCCTGCGATC TTGTCTCCGTATCGCAGAAACGTGTTCATATCGGACAGATTAGTCTCATG CAATCAGACCCACGTGCCCTGCATTGCGTTTTCTGCAGGCGTAACAACGG GTTCATCAATATGCTGCGAACGATGAAGGCGAAGGCGCTTGCTCTGGGGG GCGAGTCTGCCCTCCGCGCAGCAGTCGAGCACGCAATGCCGGCCGCAGAA GAAGAGGAGGAGGAAAAAGAGGGCGGCAAGATGGCGGCACGGATAAGTGA AAAGTGAGTTCGCACGGATTGATCTCTTGGAATGGACGTTCAGTGTGTGT ACACTTGAGACCTCCAATTATTGGTAAGGTTTACTTCCCCACTTTGTACT GGCTGCTTTGTAGGTCCTGCCTGAATCCGACGAGACTGAGCAGCCTCCCT CTGAAGGCGATGCGGTATTTTGTCCTGTGTGAAATCCGACTCGGCTGTTT ATTCATTCCCGCTTCCGATTTCTTCGTCGTGGTGAGGCCGTGCCTGCTGT ACCTCATGTTCGCGGAACTTGTTTGCTGTCCATGCGACACGTGGGCGAGG CATTAGCGCGCATTAGGCCTCGTTACTTTTAATCCTCGCATTCTAAGCAT CGAGTCTCGCCCGAGCAGAGGCGCACCAACAGACGGTTGTTCGCTGGGCT TTGTCAATGATGGATTTTTCCATTTCAATGTTGTTGTTGTCAAGCAGTCA AACGTGCAGTACGTTTCATTTGATGAAATCCCGTATCGTTGTTTTGTAAC TTTTAGGCTGCAAAAGCTCGAGCCGTTGGGGTTGGCGATCGAGGACGAGT CGGGCGGGGAAGAATCCAAGTTCAACATCAAGGTCGTGAGCAAATCGTTC GAGGGTTTGGGGCTGCTAAAGCGGCACCGACTTGTGTACGGCCTTATCGC CGACGAGATGAAGATTGTGCACGCCGTTTCCCTCGTCACAAACACCCCCG AGGAGGCGGGCGTGTAGGCGGTTGCGGCCCTAGCGTGGTGAATGTAGGTG TGGGAGCACGCACGCATCACGGTCTCAAGTAAACGCTCTCGTTACTTTTG CGTCACTGGTGCTGGTCGCACACCTTGTGTTCGACGAGGCTGGCGAAGGG GGTCCGGAATCTGATATTTTGAATCGGTTTTTTTATAGTGGGCTTGAGGA CGGTGCGAAGGGGTAGGATAATTCATCGCACGTGAGTTGGTAGCGTTGCA CTCTCTTATGTTTTCCGGCATACGATTTCTCTATTGTACCTGTAGCCGCC GACCTTTCAAGTACGATTGTTTCGTAGCTCGACGTCCACGCTCCTGAGAT GTGGCCCGGCCGGCGTTGTTGGAGAGCTGCAACTACAGCATCTCCGCCGC TGGAGCTTATTTGGGGTCCTCGCCGCTTCCGCTCCGTCGCTTCCTTGTCA GACGGGTGCATCTGGGGTGATAATTGTTTTGGTGGTGTCGCCTCTTACAT TGCTTTACTTACTTCTCCAGCGTTGCTTCCTTCTCTAGCGTGTTGTTGTA TTCTCGATGTAAAAATCATGAAAGTGTCAGAAAGACGCACCGTAGGCTTC CATCTACAGCCAGCAGCTCTTACGTGATATCTATAAAAGTACCCTATATG TAGACCCGCGGTTTTTCTCTATCATGTGAAAACGAAGCCCTTCAAATCGT GTCTGGCAGCAGCGCACCGCCTACGGCTGACGAGCGCTCGAACAGCGAAG CATGCGCCATTAAAATCATGCGAATATATACTTGTTTGCGTCTACTGTAG GGGTGAAACAAACAACATGTACACCCGCAAGACTCCGTCGCCCGTTTCCT CTATTATTGAAAGCATGATTACCGTATTACAGCAAAGAGAGGGATATTGC GCTTCGAGGTTGCAGCCCCAACGTTGACCTGTGAATCAACCAAAAAAGCT ACCACGCGAGGTAAAAGGTGGTACGAGAAAGAAGCCACCCTGCAATCGCA GGTAGGAACGACGGGACGCGACCCTTGCTCCAGTACACGGCCTACGCAAG GAGGTCGGGCGCTCCAACACACATGCTGACTTTCTG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig852:20975..24810-

>mRNA_S-dermatodea_contig852.16693.1 ID=mRNA_S-dermatodea_contig852.16693.1|Name=mRNA_S-dermatodea_contig852.16693.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1968bp|location=Sequence derived from alignment at S-dermatodea_contig852:20975..24810- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCAACACAGCACCTGCCTCGCAACAGCAGATAGAAGAGCACCACTCTT
CATCATGAGCGCGAGAAGGGTTGTGTTATCAGCGGCGTCGCTGGCGTCCA
GCATCTGCTCTGTTGGCCAAGCGTTTGTCACGCCACAAGCGCTTCAGCAA
GGCGGCGCGTTTTCGCCCCGCATAGCCTCGCACCCACGACGGGCGGTGCC
AGCACCAACCCGCCAAGGCCGCGTTGCCCATCGAATGTCGACATCGACCG
AGCTCAAGGAGCTGGGCTTGACCCCCGAGCTCGAGCGATTGACGAAGGTC
TTCAGGTCGTGCCCCAACAGCAAGATGAGACAAATGCAGCTCCTACACTT
GGCGCAAATGGGGGAGGCCTTGGACCCAGCGTTCATGACCGAGGAGAACA
AGGTGTTGGGATGCAACACAGCACCTGCCTCGCAACAGCAGATAGAAGAG
CACCACTCTTCATCATGAGCGCGAGAAGGGTTGTGTTATCAGCGGCGTCG
CTGGCGTCCAGCATCTGCTCTGTTGGCCAAGCGTTTGTCACGCCACAAGC
GCTTCAGCAAGGCGGCGCGTTTTCGCCCCGCATAGCCTCGCACCCACGAC
GGGCGGTGCCAGCACCAACCCGCCAAGGCCGCGTTGCCCATCGAATGTCG
ACATCGACCGAGCTCAAGGAGCTGGGCTTGACCCCCGAGCTCGAGCGATT
GACGAAGGTCTTCAGGTCGTGCCCCAACAGCAAGATGAGACAAATGCAGC
TCCTACACTTGGCGCAAATGGGGGAGGCCTTGGACCCAGCGTTCATGACC
GAGGAGAACAAGGTGTTGGGGTGCCTCTCCACTGTGTACGTTGCAGCAGA
GGCAAAGGATGGCCTCGTCTACTTCAAATCGGATTCGGACGCGATGATAA
CGAAGGGGCTCGCCGGTCTTCTCTCGATGGGGCTTTCAGGGAACACCGCT
GAAGCTATCCAGACCGTCAAACCGGAATTCATCAAAGTGGCGGGCCTGCA
GGCCAGCCTCACAGCGGGGTGCCTCTCCACTGTGTACGTTGCAGCAGAGG
CAAAGGATGGCCTCGTCTACTTCAAATCGGATTCGGACGCGATGATAACG
AAGGGGCTCGCCGGTCTTCTCTCGATGGGGCTTTCAGGGAACACCGCTGA
AGCTATCCAGACCGTCAAACCGGAATTCATCAAAGTGGCGGGCCTGCAGG
CCAGCCTCACAGCGGGGCGTAACAACGGGTTCATCAATATGCTGCGAACG
ATGAAGGCGAAGGCGCTTGCTCTGGGGGGCGAGTCTGCCCTCCGCGCAGC
AGTCGAGCACGCAATGCCGGCCGCAGAAGAAGAGGAGGAGGAAAAAGAGG
GCGGCAAGATGGCGGCACGGATAAGTGAAAAGCGTAACAACGGGTTCATC
AATATGCTGCGAACGATGAAGGCGAAGGCGCTTGCTCTGGGGGGCGAGTC
TGCCCTCCGCGCAGCAGTCGAGCACGCAATGCCGGCCGCAGAAGAAGAGG
AGGAGGAAAAAGAGGGCGGCAAGATGGCGGCACGGATAAGTGAAAAGCTG
CAAAAGCTCGAGCCGTTGGGGTTGGCGATCGAGGACGAGTCGGGCGGGGA
AGAATCCAAGTTCAACATCAAGGTCGTGAGCAAATCGTTCGAGGGTTTGG
GGCTGCTAAAGCGGCACCGACTTGTGTACGGCCTTATCGCCGACGAGATG
AAGATTGTGCACGCCGTTTCCCTCGTCACAAACACCCCCGAGGAGGCGGG
CGTGTAGGCTGCAAAAGCTCGAGCCGTTGGGGTTGGCGATCGAGGACGAG
TCGGGCGGGGAAGAATCCAAGTTCAACATCAAGGTCGTGAGCAAATCGTT
CGAGGGTTTGGGGCTGCTAAAGCGGCACCGACTTGTGTACGGCCTTATCG
CCGACGAGATGAAGATTGTGCACGCCGTTTCCCTCGTCACAAACACCCCC
GAGGAGGCGGGCGTGTAG
back to top