mRNA_S-dermatodea_contig85071.16679.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig85071.16679.1
Unique NamemRNA_S-dermatodea_contig85071.16679.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: D7FLS6_ECTSI (Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS6_ECTSI)

HSP 1 Score: 75.5 bits (184), Expect = 1.270e-14
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKETVR 159
            +GKRFGD+A DW L +  IP  LR W++RGYKVAIISNQ+GVG GKVD   ++
Sbjct:  298 SGKRFGDAADDWQLWNGKIPTVLRKWHDRGYKVAIISNQMGVGTGKVDPRMLK 350          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: A0A7R9FRH0_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9FRH0_9CRUS)

HSP 1 Score: 55.5 bits (132), Expect = 1.450e-7
Identity = 24/53 (45.28%), Postives = 34/53 (64.15%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKETVR 159
            +G+ F     DW +L+  IP  L+    RGYK+A ++NQLGV KGKV +E +R
Sbjct:  162 SGRVFATDRNDWRILYAEIPGKLKELASRGYKLAFLTNQLGVAKGKVGREELR 214          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: UPI000C6FB9C3 (uncharacterized protein F21D5.5 n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI000C6FB9C3)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKV 141
            +G  F   + DW LL+P +P  L+ +Y  GYK+ I+SNQ G+G GKV
Sbjct:  213 SGLEFPKDSNDWQLLYPEVPGKLKKFYTEGYKIVILSNQNGLGTGKV 259          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: A0A7D3QVN7_9VIRU (Polynucleotide kinase 3 phosphatase n=1 Tax=Fadolivirus 1 TaxID=2740746 RepID=A0A7D3QVN7_9VIRU)

HSP 1 Score: 53.9 bits (128), Expect = 5.020e-7
Identity = 22/49 (44.90%), Postives = 33/49 (67.35%), Query Frame = 1
Query:    4 GKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKE 150
            GK+FG++  DW +   +IP  L+   + G+ + IISNQ+G+ KGKVD E
Sbjct:   44 GKKFGETEDDWEIYDKSIPTKLKKLKDDGFNLVIISNQMGISKGKVDVE 92          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: Q6AXV0_RAT (Polynucleotide kinase 3'-phosphatase n=23 Tax=Tetrapoda TaxID=32523 RepID=Q6AXV0_RAT)

HSP 1 Score: 53.9 bits (128), Expect = 5.070e-7
Identity = 22/53 (41.51%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKETVR 159
            +GK F  S +DW +L+P IP  L+     GYK+ I++NQ+G+G+GK+  E  +
Sbjct:  180 SGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVILTNQMGIGRGKLPAEVFK 232          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: A0A8C6QZL9_NANGA (Polynucleotide kinase 3'-phosphatase n=9 Tax=Nannospalax galili TaxID=1026970 RepID=A0A8C6QZL9_NANGA)

HSP 1 Score: 52.0 bits (123), Expect = 2.430e-6
Identity = 21/47 (44.68%), Postives = 33/47 (70.21%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKV 141
            +GK F  S +DW +L+P IP  L+  Y  G K+ I++NQ+G+G+GK+
Sbjct:  180 SGKVFPTSPSDWRILYPEIPKKLQDLYAEGCKLVILTNQMGIGRGKL 226          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: A0A6A7AKP7_9PLEO (DNA kinase/phosphatase Pnk1 n=1 Tax=Ophiobolus disseminans TaxID=1469910 RepID=A0A6A7AKP7_9PLEO)

HSP 1 Score: 51.2 bits (121), Expect = 4.530e-6
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKETVR 159
            +GK F   ATDW   H ++P AL+  +E+GY VAI+SNQ G+   K D +TV+
Sbjct:   94 SGKVFSRDATDWKWWHRSVPGALKELHEKGYLVAIVSNQGGISL-KSDPKTVK 145          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: A0A8B7U876_CASCN (Polynucleotide kinase 3'-phosphatase n=3 Tax=Castor canadensis TaxID=51338 RepID=A0A8B7U876_CASCN)

HSP 1 Score: 49.3 bits (116), Expect = 2.180e-5
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKE 150
            +GK F     DW +L+  IP  L+     GYK+ I++NQ+G+G+GKV  E
Sbjct:  184 SGKVFPTGPNDWRILYTEIPRKLQELCVEGYKLVILTNQMGIGRGKVPAE 233          
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Match: UPI0019396931 (bifunctional polynucleotide phosphatase/kinase-like n=1 Tax=Styela clava TaxID=7725 RepID=UPI0019396931)

HSP 1 Score: 48.1 bits (113), Expect = 5.590e-5
Identity = 19/47 (40.43%), Postives = 29/47 (61.70%), Query Frame = 1
Query:    1 AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKV 141
            +G+ F     DW +L+  +P  L+      YK+ II+NQLG+GKGK+
Sbjct:  224 SGRTFAKDHNDWKILYAEVPGKLKKLQNDQYKIVIITNQLGIGKGKL 270          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig85071.16679.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FLS6_ECTSI1.270e-1462.26Polynucleotide kinase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7R9FRH0_9CRUS1.450e-745.28Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
UPI000C6FB9C32.710e-746.81uncharacterized protein F21D5.5 n=1 Tax=Copidosoma... [more]
A0A7D3QVN7_9VIRU5.020e-744.90Polynucleotide kinase 3 phosphatase n=1 Tax=Fadoli... [more]
Q6AXV0_RAT5.070e-741.51Polynucleotide kinase 3'-phosphatase n=23 Tax=Tetr... [more]
A0A8C6QZL9_NANGA2.430e-644.68Polynucleotide kinase 3'-phosphatase n=9 Tax=Nanno... [more]
A0A6A7AKP7_9PLEO4.530e-647.17DNA kinase/phosphatase Pnk1 n=1 Tax=Ophiobolus dis... [more]
A0A8B7U876_CASCN2.180e-542.00Polynucleotide kinase 3'-phosphatase n=3 Tax=Casto... [more]
UPI00193969315.590e-540.43bifunctional polynucleotide phosphatase/kinase-lik... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig85071contigS-dermatodea_contig85071:255..413 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.9
Seed ortholog evalue6.5e-12
Seed eggNOG ortholog2880.D7FLS6
KEGG koko:K08073
EggNOG free text desc.DNA-3'-diphospho-5'-guanosine diphosphatase
EggNOG OGsCOG0241@1,KOG2134@2759
EC2.7.1.78,3.1.3.32
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01009,ko03400
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size159
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925348.216729-CDS-S-dermatodea_contig85071:254..4131622925348.216729-CDS-S-dermatodea_contig85071:254..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85071 255..413 -
1694079872.6175046-CDS-S-dermatodea_contig85071:254..4131694079872.6175046-CDS-S-dermatodea_contig85071:254..413Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig85071 255..413 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig85071.16679.1prot_S-dermatodea_contig85071.16679.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig85071 255..413 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig85071.16679.1

>prot_S-dermatodea_contig85071.16679.1 ID=prot_S-dermatodea_contig85071.16679.1|Name=mRNA_S-dermatodea_contig85071.16679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
AGKRFGDSATDWTLLHPTIPAALRAWYERGYKVAIISNQLGVGKGKVDKE
TVR
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mRNA from alignment at S-dermatodea_contig85071:255..413-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig85071.16679.1 ID=mRNA_S-dermatodea_contig85071.16679.1|Name=mRNA_S-dermatodea_contig85071.16679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig85071:255..413- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGCAAGAGATTTGGGGACAGCGCGACAGACTGGACGCTCCTGCATCC CACGATACCCGCGGCGCTGAGGGCGTGGTACGAGCGCGGGTACAAGGTGG CGATTATCTCGAACCAGCTGGGCGTGGGAAAGGGAAAAGTGGACAAGGAA ACGGTGCGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig85071:255..413-

>mRNA_S-dermatodea_contig85071.16679.1 ID=mRNA_S-dermatodea_contig85071.16679.1|Name=mRNA_S-dermatodea_contig85071.16679.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig85071:255..413- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCAGGCAAGAGATTTGGGGACAGCGCGACAGACTGGACGCTCCTGCATCC
CACGATACCCGCGGCGCTGAGGGCGTGGTACGAGCGCGGGTACAAGGTGG
CGATTATCTCGAACCAGCTGGGCGTGGGAAAGGGAAAAGTGGACAAGGAA
ACGGTGCGTGCAGGCAAGAGATTTGGGGACAGCGCGACAGACTGGACGCT
CCTGCATCCCACGATACCCGCGGCGCTGAGGGCGTGGTACGAGCGCGGGT
ACAAGGTGGCGATTATCTCGAACCAGCTGGGCGTGGGAAAGGGAAAAGTG
GACAAGGAAACGGTGCGT
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