mRNA_S-dermatodea_contig84737.16644.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig84737.16644.1
Unique NamemRNA_S-dermatodea_contig84737.16644.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A1A7Z9Y0_NOTFU (Telomeric repeat-binding factor n=4 Tax=Nothobranchius TaxID=28779 RepID=A0A1A7Z9Y0_NOTFU)

HSP 1 Score: 53.1 bits (126), Expect = 7.780e-6
Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = -1
Query:  103 WSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHL 237
            W++  +  L + V +HG GKW Q++ ++DFEG+ S MLKD+WR L
Sbjct:  307 WTSKLDKFLEQGVRRHGVGKWAQILNDYDFEGRTSVMLKDRWRVL 351          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A8C5I0F0_9TELE (Telomeric repeat-binding factor n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5I0F0_9TELE)

HSP 1 Score: 52.0 bits (123), Expect = 1.990e-5
Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = -1
Query:   97 KAKKEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHLSR 261
            K +K +  W+   +  L   V +HG GKW  ++ ++DFEG+ S MLKD+WR L +
Sbjct:  307 KKRKPRQKWTYQLDRYLKDGVKRHGVGKWGHILQDYDFEGRTSVMLKDRWRVLKK 361          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI000B777E15 (telomere repeat-binding factor 4-like isoform X1 n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B777E15)

HSP 1 Score: 51.2 bits (121), Expect = 3.330e-5
Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = -1
Query:  100 KEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEG---KFSNM-LKDKWRHLS 252
            KEK  W+A +E  L   VAKHG GKWK ++ + DF     + SN+ LKDKWR+LS
Sbjct:    3 KEKQKWTAEEEEALLNGVAKHGPGKWKNILKDPDFAPFLTQRSNIDLKDKWRNLS 57          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A1U8FTQ0_CAPAN (MYB transcription factor n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8FTQ0_CAPAN)

HSP 1 Score: 51.2 bits (121), Expect = 3.370e-5
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = -1
Query:  100 KTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 246
            K  W++ +E  L   VAKHGTG+WK ++ + DF    SN     LKDKWR++S
Sbjct:    5 KVKWTSEEEDALKAGVAKHGTGRWKNILRDPDFSSLLSNRSNIDLKDKWRNMS 57          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI000B8D0441 (telomere repeat-binding factor 4-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0441)

HSP 1 Score: 51.2 bits (121), Expect = 3.420e-5
Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = -1
Query:  100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
            +K  W+A +E  L   VAKHG GKWK ++ + DF    +N     LKDKWR+LS
Sbjct:    4 QKQKWTAEEEEALLAGVAKHGPGKWKNILKDPDFAPSLTNRSNIDLKDKWRNLS 57          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI001FB06C88 (telomere repeat-binding factor 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB06C88)

HSP 1 Score: 50.8 bits (120), Expect = 4.800e-5
Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query:   82 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKF---SNM-LKDKWRHLSRRMSLE 249
            +K  W++ +E  L   +AKHGTGKWK ++ + DF       SN+ LKDKWR++S   SL+
Sbjct:    4 QKLKWTSEEEDALKAGIAKHGTGKWKNILKDPDFAHSLIHRSNIDLKDKWRNMSISTSLQ 63          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI00053C694F (telomere repeat-binding factor 4-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C694F)

HSP 1 Score: 50.8 bits (120), Expect = 4.820e-5
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = -1
Query:  100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
            +K  W+A +E  L   VAKHG GKWK ++ + DF  + ++     LKDKWR+LS
Sbjct:    4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPDFSSQLTHRSNIDLKDKWRNLS 57          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A6I9STA2_SESIN (MYB transcription factor n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9STA2_SESIN)

HSP 1 Score: 50.4 bits (119), Expect = 6.070e-5
Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = -1
Query:  103 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHL 249
            +K  W+A +E  L   VAKHG GKWK ++ + +F  K +N     LKDKWR++
Sbjct:    4 QKQKWTAEEEEALKAGVAKHGAGKWKNILIDSEFAPKLANRSNVDLKDKWRNM 56          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: V4JRK8_EUTSA (MYB transcription factor n=4 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JRK8_EUTSA)

HSP 1 Score: 50.4 bits (119), Expect = 6.370e-5
Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = -1
Query:  100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
            +K  W+A +E  L   +AKHG GKWK ++ + +F  + +N     LKDKWR+LS
Sbjct:    4 QKLKWTAEEEEALLAGIAKHGAGKWKNILRDPEFADQLTNRSNIDLKDKWRNLS 57          
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: W5JYR0_ASTMX (Telomeric repeat-binding factor n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5JYR0_ASTMX)

HSP 1 Score: 50.4 bits (119), Expect = 6.880e-5
Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = -1
Query:   97 KEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHLSR 252
            K K  W+  ++  L   V ++G GKW +++ EF FEG+ S MLKD+WR + +
Sbjct:  303 KSKKKWTWEEDMNLKSGVRRYGEGKWTKILEEFQFEGRTSVMLKDRWRTMKK 354          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A1A7Z9Y0_NOTFU7.780e-646.67Telomeric repeat-binding factor n=4 Tax=Nothobranc... [more]
A0A8C5I0F0_9TELE1.990e-540.00Telomeric repeat-binding factor n=1 Tax=Gouania wi... [more]
UPI000B777E153.330e-550.91telomere repeat-binding factor 4-like isoform X1 n... [more]
A0A1U8FTQ0_CAPAN3.370e-545.28MYB transcription factor n=4 Tax=Capsicum TaxID=40... [more]
UPI000B8D04413.420e-546.30telomere repeat-binding factor 4-like n=1 Tax=Cari... [more]
UPI001FB06C884.800e-543.33telomere repeat-binding factor 4-like n=1 Tax=Impa... [more]
UPI00053C694F4.820e-544.44telomere repeat-binding factor 4-like n=1 Tax=Tare... [more]
A0A6I9STA2_SESIN6.070e-543.40MYB transcription factor n=2 Tax=Sesamum indicum T... [more]
V4JRK8_EUTSA6.370e-542.59MYB transcription factor n=4 Tax=Eutrema salsugine... [more]
W5JYR0_ASTMX6.880e-540.38Telomeric repeat-binding factor n=3 Tax=Astyanax m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig84737contigS-dermatodea_contig84737:140..471 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925345.814421-CDS-S-dermatodea_contig84737:139..4691622925345.814421-CDS-S-dermatodea_contig84737:139..469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84737 140..469 +
1694079870.950616-CDS-S-dermatodea_contig84737:139..4691694079870.950616-CDS-S-dermatodea_contig84737:139..469Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig84737 140..469 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig84737.16644.1prot_S-dermatodea_contig84737.16644.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig84737 140..469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig84737.16644.1

>prot_S-dermatodea_contig84737.16644.1 ID=prot_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp
PPRRAVRVRARPSPIAKKTTDRERASLLEGHPPGKVTPLILEHVGKLPLE
IKLGHHLLPLPRAVLRHRFSEQGLLTRGPVRLLLLCFLDRRPGPPPAAPI
RLLALLRRAR
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mRNA from alignment at S-dermatodea_contig84737:140..471+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig84737.16644.1 ID=mRNA_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=332bp|location=Sequence derived from alignment at S-dermatodea_contig84737:140..471+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCTCGGCGCGCCGTTCGCGTTCGCGCGCGCCCGTCCCCCATTGCCAA AAAAACAACCGACAGAGAGCGCGCTTCACTACTCGAGGGACATCCTCCGG GAAAGGTGACGCCACTTATCCTTGAGCATGTTGGAAAACTTCCCCTCGAA ATCAAACTCGGCCACCATCTGCTTCCACTTCCCCGTGCCGTGCTTCGCCA CCGCTTTAGCGAGCAAGGCCTCCTGACTCGCGGACCAGTACGTCTTCTCC TTCTTTGCTTTCTTGACCGCCGACCCGGACCCCCCCCCGCGGCCCCCATC CGGCTCCTTGCGCTTCTTCGACGGGCTCGAAT
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Coding sequence (CDS) from alignment at S-dermatodea_contig84737:140..471+

>mRNA_S-dermatodea_contig84737.16644.1 ID=mRNA_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig84737:140..471+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CCCCCTCGGCGCGCCGTTCGCGTTCGCGCGCGCCCGTCCCCCATTGCCAA
AAAAACAACCGACAGAGAGCGCGCTTCACTACTCGAGGGACATCCTCCGG
GAAAGGTGACGCCACTTATCCTTGAGCATGTTGGAAAACTTCCCCTCGAA
ATCAAACTCGGCCACCATCTGCTTCCACTTCCCCGTGCCGTGCTTCGCCA
CCGCTTTAGCGAGCAAGGCCTCCTGACTCGCGGACCAGTACGTCTTCTCC
TTCTTTGCTTTCTTGACCGCCGACCCGGACCCCCCCCCGCGGCCCCCATC
CGGCTCCTTGCGCTTCTTCGACGGGCTCGACCCCCTCGGCGCGCCGTTCG
CGTTCGCGCGCGCCCGTCCCCCATTGCCAAAAAAACAACCGACAGAGAGC
GCGCTTCACTACTCGAGGGACATCCTCCGGGAAAGGTGACGCCACTTATC
CTTGAGCATGTTGGAAAACTTCCCCTCGAAATCAAACTCGGCCACCATCT
GCTTCCACTTCCCCGTGCCGTGCTTCGCCACCGCTTTAGCGAGCAAGGCC
TCCTGACTCGCGGACCAGTACGTCTTCTCCTTCTTTGCTTTCTTGACCGC
CGACCCGGACCCCCCCCCGCGGCCCCCATCCGGCTCCTTGCGCTTCTTCG
ACGGGCTCGA
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