mRNA_S-dermatodea_contig84737.16644.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A1A7Z9Y0_NOTFU (Telomeric repeat-binding factor n=4 Tax=Nothobranchius TaxID=28779 RepID=A0A1A7Z9Y0_NOTFU) HSP 1 Score: 53.1 bits (126), Expect = 7.780e-6 Identity = 21/45 (46.67%), Postives = 32/45 (71.11%), Query Frame = -1
Query: 103 WSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHL 237
W++ + L + V +HG GKW Q++ ++DFEG+ S MLKD+WR L
Sbjct: 307 WTSKLDKFLEQGVRRHGVGKWAQILNDYDFEGRTSVMLKDRWRVL 351
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A8C5I0F0_9TELE (Telomeric repeat-binding factor n=1 Tax=Gouania willdenowi TaxID=441366 RepID=A0A8C5I0F0_9TELE) HSP 1 Score: 52.0 bits (123), Expect = 1.990e-5 Identity = 22/55 (40.00%), Postives = 34/55 (61.82%), Query Frame = -1
Query: 97 KAKKEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHLSR 261
K +K + W+ + L V +HG GKW ++ ++DFEG+ S MLKD+WR L +
Sbjct: 307 KKRKPRQKWTYQLDRYLKDGVKRHGVGKWGHILQDYDFEGRTSVMLKDRWRVLKK 361
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI000B777E15 (telomere repeat-binding factor 4-like isoform X1 n=2 Tax=Hevea brasiliensis TaxID=3981 RepID=UPI000B777E15) HSP 1 Score: 51.2 bits (121), Expect = 3.330e-5 Identity = 28/55 (50.91%), Postives = 36/55 (65.45%), Query Frame = -1
Query: 100 KEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEG---KFSNM-LKDKWRHLS 252
KEK W+A +E L VAKHG GKWK ++ + DF + SN+ LKDKWR+LS
Sbjct: 3 KEKQKWTAEEEEALLNGVAKHGPGKWKNILKDPDFAPFLTQRSNIDLKDKWRNLS 57
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A1U8FTQ0_CAPAN (MYB transcription factor n=4 Tax=Capsicum TaxID=4071 RepID=A0A1U8FTQ0_CAPAN) HSP 1 Score: 51.2 bits (121), Expect = 3.370e-5 Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = -1
Query: 100 KTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 246
K W++ +E L VAKHGTG+WK ++ + DF SN LKDKWR++S
Sbjct: 5 KVKWTSEEEDALKAGVAKHGTGRWKNILRDPDFSSLLSNRSNIDLKDKWRNMS 57
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI000B8D0441 (telomere repeat-binding factor 4-like n=1 Tax=Carica papaya TaxID=3649 RepID=UPI000B8D0441) HSP 1 Score: 51.2 bits (121), Expect = 3.420e-5 Identity = 25/54 (46.30%), Postives = 33/54 (61.11%), Query Frame = -1
Query: 100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
+K W+A +E L VAKHG GKWK ++ + DF +N LKDKWR+LS
Sbjct: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILKDPDFAPSLTNRSNIDLKDKWRNLS 57
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI001FB06C88 (telomere repeat-binding factor 4-like n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB06C88) HSP 1 Score: 50.8 bits (120), Expect = 4.800e-5 Identity = 26/60 (43.33%), Postives = 38/60 (63.33%), Query Frame = -1
Query: 82 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKF---SNM-LKDKWRHLSRRMSLE 249
+K W++ +E L +AKHGTGKWK ++ + DF SN+ LKDKWR++S SL+
Sbjct: 4 QKLKWTSEEEDALKAGIAKHGTGKWKNILKDPDFAHSLIHRSNIDLKDKWRNMSISTSLQ 63
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: UPI00053C694F (telomere repeat-binding factor 4-like n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C694F) HSP 1 Score: 50.8 bits (120), Expect = 4.820e-5 Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = -1
Query: 100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
+K W+A +E L VAKHG GKWK ++ + DF + ++ LKDKWR+LS
Sbjct: 4 QKQKWTAEEEEALLAGVAKHGPGKWKNILRDPDFSSQLTHRSNIDLKDKWRNLS 57
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: A0A6I9STA2_SESIN (MYB transcription factor n=2 Tax=Sesamum indicum TaxID=4182 RepID=A0A6I9STA2_SESIN) HSP 1 Score: 50.4 bits (119), Expect = 6.070e-5 Identity = 23/53 (43.40%), Postives = 33/53 (62.26%), Query Frame = -1
Query: 103 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHL 249
+K W+A +E L VAKHG GKWK ++ + +F K +N LKDKWR++
Sbjct: 4 QKQKWTAEEEEALKAGVAKHGAGKWKNILIDSEFAPKLANRSNVDLKDKWRNM 56
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: V4JRK8_EUTSA (MYB transcription factor n=4 Tax=Eutrema salsugineum TaxID=72664 RepID=V4JRK8_EUTSA) HSP 1 Score: 50.4 bits (119), Expect = 6.370e-5 Identity = 23/54 (42.59%), Postives = 34/54 (62.96%), Query Frame = -1
Query: 100 EKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNM----LKDKWRHLS 249
+K W+A +E L +AKHG GKWK ++ + +F + +N LKDKWR+LS
Sbjct: 4 QKLKWTAEEEEALLAGIAKHGAGKWKNILRDPEFADQLTNRSNIDLKDKWRNLS 57
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Match: W5JYR0_ASTMX (Telomeric repeat-binding factor n=3 Tax=Astyanax mexicanus TaxID=7994 RepID=W5JYR0_ASTMX) HSP 1 Score: 50.4 bits (119), Expect = 6.880e-5 Identity = 21/52 (40.38%), Postives = 33/52 (63.46%), Query Frame = -1
Query: 97 KEKTYWSASQEALLAKAVAKHGTGKWKQMVAEFDFEGKFSNMLKDKWRHLSR 252
K K W+ ++ L V ++G GKW +++ EF FEG+ S MLKD+WR + +
Sbjct: 303 KSKKKWTWEEDMNLKSGVRRYGEGKWTKILEEFQFEGRTSVMLKDRWRTMKK 354 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig84737.16644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig84737.16644.1 >prot_S-dermatodea_contig84737.16644.1 ID=prot_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=110bp PPRRAVRVRARPSPIAKKTTDRERASLLEGHPPGKVTPLILEHVGKLPLEback to top mRNA from alignment at S-dermatodea_contig84737:140..471+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig84737.16644.1 ID=mRNA_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=332bp|location=Sequence derived from alignment at S-dermatodea_contig84737:140..471+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig84737:140..471+ >mRNA_S-dermatodea_contig84737.16644.1 ID=mRNA_S-dermatodea_contig84737.16644.1|Name=mRNA_S-dermatodea_contig84737.16644.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at S-dermatodea_contig84737:140..471+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |