mRNA_S-dermatodea_contig8426.16595.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8426.16595.1
Unique NamemRNA_S-dermatodea_contig8426.16595.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8426.16595.1 vs. uniprot
Match: D7FJA1_ECTSI (Putative Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJA1_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 2.380e-46
Identity = 194/228 (85.09%), Postives = 207/228 (90.79%), Query Frame = 1
Query:  511 MCHFPGAILRSGLVFERVAALSLSGQGIGDGDIPASVARLAGGSLRSVDVSKNRLTVVPPGLLELGGVLEELNLGDNEIAEMPPEIANLTGLRSFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELCRIAVNPGLTVVPEGLAFAERLAWVSLAGTGWCARATEKRRR 1194
            MC  PG +LRSGLVF+RV ALS+ GQGIGDGD+PASV RLAG  LR VD+S NRLT VPPGLL LG  LE+LNLG+N+IAEMPPEIA L GL  FNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LCR+AVNPGLTVVPEGL +AE+LAWVSLAG+ WCARA+EKRRR
Sbjct:    1 MCLLPGIVLRSGLVFQRVTALSMPGQGIGDGDVPASVVRLAG-VLRKVDLSGNRLTAVPPGLLGLGAGLEDLNLGNNDIAEMPPEIAKLGGLLFFNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLCRLAVNPGLTVVPEGLTYAEKLAWVSLAGSAWCARASEKRRR 227          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8426.16595.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJA1_ECTSI2.380e-4685.09Putative Leucine Rich Repeat Protein Kinase n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8426contigS-dermatodea_contig8426:4254..9051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPutative Leucine Rich Repeat Protein Kinase
Ec32 orthologEc-12_008310.1
Exons4
Model size1197
Cds size1197
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8426.16595.1prot_S-dermatodea_contig8426.16595.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8426 4254..9051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925342.3273563-CDS-S-dermatodea_contig8426:4253..50181622925342.3273563-CDS-S-dermatodea_contig8426:4253..5018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 4254..5018 +
1694079868.5850928-CDS-S-dermatodea_contig8426:4253..50181694079868.5850928-CDS-S-dermatodea_contig8426:4253..5018Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 4254..5018 +
1622925342.3374639-CDS-S-dermatodea_contig8426:5805..60121622925342.3374639-CDS-S-dermatodea_contig8426:5805..6012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 5806..6012 +
1694079868.5967264-CDS-S-dermatodea_contig8426:5805..60121694079868.5967264-CDS-S-dermatodea_contig8426:5805..6012Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 5806..6012 +
1622925342.3515716-CDS-S-dermatodea_contig8426:6691..67921622925342.3515716-CDS-S-dermatodea_contig8426:6691..6792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 6692..6792 +
1694079868.6090484-CDS-S-dermatodea_contig8426:6691..67921694079868.6090484-CDS-S-dermatodea_contig8426:6691..6792Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 6692..6792 +
1622925342.3603666-CDS-S-dermatodea_contig8426:8927..90511622925342.3603666-CDS-S-dermatodea_contig8426:8927..9051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 8928..9051 +
1694079868.618096-CDS-S-dermatodea_contig8426:8927..90511694079868.618096-CDS-S-dermatodea_contig8426:8927..9051Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8426 8928..9051 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8426.16595.1

>prot_S-dermatodea_contig8426.16595.1 ID=prot_S-dermatodea_contig8426.16595.1|Name=mRNA_S-dermatodea_contig8426.16595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=399bp
SAGGGGGGGAGEGGETKSSNTNTNGNGRFENIPTCSCNSPSTATSAATAA
AASAAAVAATALVRRAAHGGTAKAAAAGTPRRGRHDRRSELNGNRRRRSR
TREGSGGSVAAGAAASLAGGASVGLASVGLGRKASAGGGSAVNAAAVEAA
AAAEVAARGATVVSVTSLRRMCHFPGAILRSGLVFERVAALSLSGQGIGD
GDIPASVARLAGGSLRSVDVSKNRLTVVPPGLLELGGVLEELNLGDNEIA
EMPPEIANLTGLRSFNMAGNRLTRVPPEVGKLSALRRLGLKGNALVRLPS
TIGDLSHLVELYLTGNILEALPNEIVKLRRLKKLQLSFNNLRSLPPGMEG
LRGLELCRIAVNPGLTVVPEGLAFAERLAWVSLAGTGWCARATEKRRR*
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mRNA from alignment at S-dermatodea_contig8426:4254..9051+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8426.16595.1 ID=mRNA_S-dermatodea_contig8426.16595.1|Name=mRNA_S-dermatodea_contig8426.16595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=4798bp|location=Sequence derived from alignment at S-dermatodea_contig8426:4254..9051+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCCGGCGGAGGCGGGGGCGGGGGCGCCGGGGAGGGGGGCGAAACAAA ATCCTCCAACACCAACACCAACGGGAACGGGAGGTTCGAAAACATCCCTA CTTGCTCCTGCAACTCCCCCTCCACGGCCACCTCCGCGGCTACCGCGGCC GCCGCATCTGCCGCCGCCGTCGCGGCCACCGCGCTGGTGCGACGAGCCGC GCACGGCGGGACGGCGAAGGCGGCAGCCGCCGGCACCCCTAGACGAGGCC GCCACGACCGCCGCTCGGAGCTCAACGGTAACCGCAGACGGCGCTCGAGA ACCCGGGAGGGGTCGGGCGGCTCCGTGGCGGCGGGGGCTGCCGCGTCTCT CGCCGGGGGGGCTTCGGTTGGGCTTGCCTCTGTGGGATTGGGGAGGAAGG CGTCCGCCGGTGGCGGGTCCGCCGTGAATGCCGCGGCAGTGGAAGCTGCG GCCGCGGCGGAGGTGGCCGCTAGGGGGGCTACGGTCGTGTCGGTGACCTC GCTGCGTCGCATGTGTCACTTTCCCGGGGCGATCCTGAGGTCTGGGCTGG TTTTCGAGAGGGTGGCGGCGTTATCGTTGTCGGGGCAGGGGATAGGGGAC GGGGATATCCCGGCTTCGGTGGCGAGGCTGGCGGGGGGGAGTCTACGGAG CGTGGACGTTAGCAAGAACAGGCTTACCGTTGTGCCGCCGGGGCTGTTGG AGCTGGGCGGGGTTTTGGAGGAGCTTAATCTGGGGGACAACGAGATCGCG GAGATGCCTCCAGAGGTACGTATCATACGGCAAGGCAGACGCTGTAGTTA GAGCAGGCCTTGTTTTTTCCTTTTTCTTTTGTTGCTGGTGCGTTAAGACA TTTTGGCAGGTTGTCCCCCTGCGTAGGAGGGTCATACCGGTAGCCAGCTC CAAGTCCGAGTATGAATGCGATTTCTCTTGGAATGTTTTTGCATTTTTTG GTTCTGCGACAACCAGGAAATCGAAATACGTTTTAGTTTAGCCAATCGTT TGCAAGTTCTAGAATCAAAAATTGGAGTGCGACCTTTGCATACACGCCGG GGAAAGTAGAGAGCGTTTATCATCGGGGACTCGGTTGTCGCTACGGGCTA TTTATCATCCCCCGAACAGGCAGCACTCCTCTTCATACTTGTTGGAGGCG CTTTTTAGGATAAGAACTAGCGAATTCCCGCGTGAGGCCACAAGAGTCTG TGGGAAGGAGTCCGAGGCGTGGTTAACTTATTCATTCTTGCACTGTAGCG AGGAGACTCGCTTTTTTTTTTTTTCTGGTTCGTGGGAAGACCAGGCCGTT ATAACTCCGTTCTTGTTCGTGGTTCCGTCTGTCGTTGACGCTCCGTCGGC AGTGGGAACCCCCAGGATGGATGTGCAGACCGGGGATAGATGTATGGACG GTCTTGGAAATTTGTTCTCGACACACGTTTTTTTTTTGTGCTGACCCTTG TTTCGAAGCATGGGGGTGGTCTTGCAATGTTTTACGCTCATCGAACTGAG CTTGCCGCTGCCGCCGTGCTTGCGCTCGGCCCCCCACCCCGTTTTCGAGC AGATCGCAAACCTGACCGGCCTGCGGAGTTTCAATATGGCCGGGAATCGC CTCACGAGGGTCCCTCCCGAGGTCGGGAAGCTGTCGGCGCTTCGCCGGCT AGGGCTGAAGGGGAACGCCCTCGTGCGGCTGCCGTCGACCATCGGGGATC TGTCGCATTTGGTAGAGCTGTACCTAACGGGGAACATCCTTGAGGCCCTG CCCAACGAGGTGGGTTTTTGTTCACGACTGGGTGGCGTGTTTGGTGAGGA GGGGGGCGGGGGGGGGGGGGTATTCGTGTTTTGCATGCCTTTGCTGTTAA GACCATTGACCACGCGTCCCCGAGGAGCACTGTTCCCACAGGATCGTTTC ATTGCCGATGGCCAATCGTTCCTTCCTACTTTGCCAAAGGTGGTGCAATT TTTATTTATTTTATATCGCGTCTCCCGCAATTTCTTGCCTTCTCGGGCCA CTTCTTATCCCCCAGTATCATTATTATTATTAATAGTAGTAACCGCCCTC GTCTAGCTGTCCTCTGCTTCAAAAGCATCTCTTACATCACCATCGTCAAC ATATCACAGTTTACATCGTTCTACTTTCCTCGATTAAATCATGTACACTT CTCTCTTCCTTATCCCACAGAGTGGGCACTCGGCCACTGCTGCCAATTCA TGAGCACGGCGTTCCCACGCGTCCAAACCGCAAGTACATTTTGGGTATGC ATAGGGGGCCCAAGCGTCCGAGCGTCGTGGCGTCTCAAAACCCCTCGATC CGCGCCGCACATTTGTTTCAGTTTTAATTTTTTAATTTTTTGTTCTTGCT TTTCCGTTTCGTTTAATCCTCTTGTTGATCTGTTTGTTTTCGTCGCGTGG GATATGTATGCATATATATATACGGCGGTCGCCGGCAGATCGTGAAGCTG CGGCGCTTGAAGAAGCTGCAGCTGTCGTTCAACAACTTGCGCTCGCTTCC GCCGGGGATGGAGGGCCTCCGTGGCCTGGAGCTGTGCAGGTGTGTGCGGT CGTGCCCGTTTTTGCGGTGTTGGGAGCACAGGAGGCGTTTTTCGGGTGGG CTCCCTTCGTGGTCGTTGCGTGGCGGCGGCGTTGGCCGTTGTCTTTACAT CCCGCTCGTTTGTGGAGGGCAGGTATGTACATGTCATTCCGCCTCAGTTT GGAACCGATTTCCGTGTTTTTGGGGCCCACCTACCTGAATCTGCCTGCAT CTGCCTGCATCCGCCTGAATCCGCCTGCACCGTCTTCGCGTCGAACAACT CTGTACAAGTGCCCAACCCCGGGTTTACCCTAGCCGCAGTGGCGGCAAAG CGACGCCGTGACACGCTCTGCTTGCACGCACGGCGGCGATGGTGGTTGTG GTGGTGTGCTTGTGCTCGGGTGTTGACATCCCTAACGGGTGTTGACATCC CTAACCACCGCGATGCGATAATACCATCCCTACCCGCACTGACGTTTTCT CGGTTTTCTCGCGAAAAAACGGACTCACACCCGAAAGGGCTGAATAGGTA GATCCCGACTGCTTCGGACAGTTAGTTCCATGCCCTCTTCTGGTTTACGC CGTTGCAGGAGTCGTTGGGCCCCCCTGAAAACACAAAATTTCTTGCGCCC CTCGCCCCCGCCCCCCTCCCGCTCCCTCCCCCCACTCCCCCGCGCGCCCC CTCCTCCTCGTTGCTTCGCTGGCAAGAAGATCCCCTCGACCCTCGGCCTC CACGAGTCCAAAGGATTTCGAGCCCTGGCCACCTTCAACGGCGCGTTGCA TAGATCTAGGCGTTGCGCCGACACTCTCTCGTTGAGAGCAAAATTTATTC AATCAGGGGCCTTCACATGCCCGGCAATTACCTGCGTCTTTTCACATTTC CATGCTCACATCCATGTCCATGTCCATGTCCCATGTCCCATGTCCATGTC CCATGTTTATGTCCCATATCCATCTGGTCCAGAACCGGTTTTCAGTTTGG CACTCCTGTCTGAACTTTTTGTCTGTCCTAACCTGGACTGGTTCCGCAAT TGTCATATTTTCTGGACATAATGCTATTAATAGAGGGCCGAACAGGTCAA AAGAGCTCGCGGTCGTGTGACATTCTCTGTTTTTTTGTATTTGTCCGAGT TAACCCGCGTGGTTGTGACCGCCGATGGAATTGTCCAACAGCTCTTGCCA TGAACAGCTCAGCTGCAATTTGTAGCTGCCTGCTCTTGTTGGTTGTTGAC TCACACCACACAAATATTGTGCCGAAAGTCTCTCTCCTTTTCTTTTTTTT TCCGCTTGAACGAGCTTTTGGATCTTCATAGGATATGTATTTCCCATTAA AACACGCATTACCCGAGGATTACACATGCCCGTATCCAGTGCCGGTTTTC TGGTCGGTCCTGTCCAAATTTATCTTGTCTTCAACAGGGCCTGGTTCAGC CCTGTCCGAACCTTTAGTTGCCTAGCCGGCACTTGATCGGCGCTGTGAAG TATTTTAGCCGGTACTGGTTCGACACTGTGAGAAATTCCTGGGCATGTGA AAACCCTTGATTCGTTCCAGCCAAGCTACAGTATATCAGTGGAGCAAGGC TCTGCCGATCCGTGTTTGGCATATTTTGGTCTCCCCACCCACCCCTATAC CCCATCCCCCTACCCCGGCCGCCCCCCGTAAAGGCAATAAAAAAATAAAA AAACGTACCTTTGTAAAGGGGGCATTTAGACAAACCCTTTTCGTCGGTTG AAGTATTTCTGGTGTACCGGTACTATAATACGTGGATGATTCCGTGATGT GTTTTCTCGATTTTCTCGACTTTTCATCCGACCACGAGCGGGATCGGCAA ACAATTGGCGGGCCGTGCCGGGCCGGTCAGCTGTAAGTGTGGTGATCAAT CAATCAATCAATCAATCAATCCATGAAGCAGTTAACCAATCAGTCAATCA ATCAAATCAAATCAAATCAAATCAAATCAAATCAAATCAAATCAACTAAA TTGGAGCAAGATGGCCTAGGCTGTCCGCCCTAAACATACTTTTTTGAGTG CGAGCTATCCCCATGTATAGAAGTAGTACTGCAACACCTTACAGAAAAGC AAGTGTATTATAACATGATCATGTCATGACGCCCTACCTTCCGCACGCCG CGCTTTCTGTCCCTCTGTGTCCAGGATCGCCGTTAACCCCGGGCTGACCG TTGTGCCGGAGGGGCTGGCCTTTGCGGAGCGTCTGGCGTGGGTGTCCCTC GCTGGTACTGGGTGGTGCGCACGAGCTACGGAAAAGCGCCGCAGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig8426:4254..9051+

>mRNA_S-dermatodea_contig8426.16595.1 ID=mRNA_S-dermatodea_contig8426.16595.1|Name=mRNA_S-dermatodea_contig8426.16595.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=2394bp|location=Sequence derived from alignment at S-dermatodea_contig8426:4254..9051+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCCGGCGGAGGCGGGGGCGGGGGCGCCGGGGAGGGGGGCGAAACAAA
ATCCTCCAACACCAACACCAACGGGAACGGGAGGTTCGAAAACATCCCTA
CTTGCTCCTGCAACTCCCCCTCCACGGCCACCTCCGCGGCTACCGCGGCC
GCCGCATCTGCCGCCGCCGTCGCGGCCACCGCGCTGGTGCGACGAGCCGC
GCACGGCGGGACGGCGAAGGCGGCAGCCGCCGGCACCCCTAGACGAGGCC
GCCACGACCGCCGCTCGGAGCTCAACGGTAACCGCAGACGGCGCTCGAGA
ACCCGGGAGGGGTCGGGCGGCTCCGTGGCGGCGGGGGCTGCCGCGTCTCT
CGCCGGGGGGGCTTCGGTTGGGCTTGCCTCTGTGGGATTGGGGAGGAAGG
CGTCCGCCGGTGGCGGGTCCGCCGTGAATGCCGCGGCAGTGGAAGCTGCG
GCCGCGGCGGAGGTGGCCGCTAGGGGGGCTACGGTCGTGTCGGTGACCTC
GCTGCGTCGCATGTGTCACTTTCCCGGGGCGATCCTGAGGTCTGGGCTGG
TTTTCGAGAGGGTGGCGGCGTTATCGTTGTCGGGGCAGGGGATAGGGGAC
GGGGATATCCCGGCTTCGGTGGCGAGGCTGGCGGGGGGGAGTCTACGGAG
CGTGGACGTTAGCAAGAACAGGCTTACCGTTGTGCCGCCGGGGCTGTTGG
AGCTGGGCGGGGTTTTGGAGGAGCTTAATCTGGGGGACAACGAGATCGCG
GAGATGCCTCCAGAGAGCGCCGGCGGAGGCGGGGGCGGGGGCGCCGGGGA
GGGGGGCGAAACAAAATCCTCCAACACCAACACCAACGGGAACGGGAGGT
TCGAAAACATCCCTACTTGCTCCTGCAACTCCCCCTCCACGGCCACCTCC
GCGGCTACCGCGGCCGCCGCATCTGCCGCCGCCGTCGCGGCCACCGCGCT
GGTGCGACGAGCCGCGCACGGCGGGACGGCGAAGGCGGCAGCCGCCGGCA
CCCCTAGACGAGGCCGCCACGACCGCCGCTCGGAGCTCAACGGTAACCGC
AGACGGCGCTCGAGAACCCGGGAGGGGTCGGGCGGCTCCGTGGCGGCGGG
GGCTGCCGCGTCTCTCGCCGGGGGGGCTTCGGTTGGGCTTGCCTCTGTGG
GATTGGGGAGGAAGGCGTCCGCCGGTGGCGGGTCCGCCGTGAATGCCGCG
GCAGTGGAAGCTGCGGCCGCGGCGGAGGTGGCCGCTAGGGGGGCTACGGT
CGTGTCGGTGACCTCGCTGCGTCGCATGTGTCACTTTCCCGGGGCGATCC
TGAGGTCTGGGCTGGTTTTCGAGAGGGTGGCGGCGTTATCGTTGTCGGGG
CAGGGGATAGGGGACGGGGATATCCCGGCTTCGGTGGCGAGGCTGGCGGG
GGGGAGTCTACGGAGCGTGGACGTTAGCAAGAACAGGCTTACCGTTGTGC
CGCCGGGGCTGTTGGAGCTGGGCGGGGTTTTGGAGGAGCTTAATCTGGGG
GACAACGAGATCGCGGAGATGCCTCCAGAGATCGCAAACCTGACCGGCCT
GCGGAGTTTCAATATGGCCGGGAATCGCCTCACGAGGGTCCCTCCCGAGG
TCGGGAAGCTGTCGGCGCTTCGCCGGCTAGGGCTGAAGGGGAACGCCCTC
GTGCGGCTGCCGTCGACCATCGGGGATCTGTCGCATTTGGTAGAGCTGTA
CCTAACGGGGAACATCCTTGAGGCCCTGCCCAACGAGATCGCAAACCTGA
CCGGCCTGCGGAGTTTCAATATGGCCGGGAATCGCCTCACGAGGGTCCCT
CCCGAGGTCGGGAAGCTGTCGGCGCTTCGCCGGCTAGGGCTGAAGGGGAA
CGCCCTCGTGCGGCTGCCGTCGACCATCGGGGATCTGTCGCATTTGGTAG
AGCTGTACCTAACGGGGAACATCCTTGAGGCCCTGCCCAACGAGATCGTG
AAGCTGCGGCGCTTGAAGAAGCTGCAGCTGTCGTTCAACAACTTGCGCTC
GCTTCCGCCGGGGATGGAGGGCCTCCGTGGCCTGGAGCTGTGCAGATCGT
GAAGCTGCGGCGCTTGAAGAAGCTGCAGCTGTCGTTCAACAACTTGCGCT
CGCTTCCGCCGGGGATGGAGGGCCTCCGTGGCCTGGAGCTGTGCAGGATC
GCCGTTAACCCCGGGCTGACCGTTGTGCCGGAGGGGCTGGCCTTTGCGGA
GCGTCTGGCGTGGGTGTCCCTCGCTGGTACTGGGTGGTGCGCACGAGCTA
CGGAAAAGCGCCGCAGGTGAGATCGCCGTTAACCCCGGGCTGACCGTTGT
GCCGGAGGGGCTGGCCTTTGCGGAGCGTCTGGCGTGGGTGTCCCTCGCTG
GTACTGGGTGGTGCGCACGAGCTACGGAAAAGCGCCGCAGGTGA
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