mRNA_S-dermatodea_contig8422.16590.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8422.16590.1
Unique NamemRNA_S-dermatodea_contig8422.16590.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8422.16590.1 vs. uniprot
Match: D7G9D8_ECTSI (MutL protein homolog 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9D8_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 5.690e-6
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 2 
Query:  284 AEDAALAYDRDVIGGDGLAYGDGRAQ--PERGEDFLRGVLPAEACDSCQVTDPGGSAVNSPRGP 469
            A  AALAYD+DV+GGDGL  GDG  +  P+  +  L   L     DSC V+D GG+AV SP+GP
Sbjct: 1277 AAGAALAYDQDVLGGDGLG-GDGEEEEEPDTVDGVLGKFLATGDYDSCHVSDAGGAAVYSPQGP 1339
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8422.16590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G9D8_ECTSI5.690e-651.56MutL protein homolog 3 n=1 Tax=Ectocarpus siliculo... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8422contigS-dermatodea_contig8422:5736..6911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size471
Cds size438
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8422.16590.1prot_S-dermatodea_contig8422.16590.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8422 5736..6880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.9585104-CDS-S-dermatodea_contig8422:5735..57871622925341.9585104-CDS-S-dermatodea_contig8422:5735..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8422 5736..5787 -
1694079868.356543-CDS-S-dermatodea_contig8422:5735..57871694079868.356543-CDS-S-dermatodea_contig8422:5735..5787Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8422 5736..5787 -
1622925341.9691596-CDS-S-dermatodea_contig8422:6494..68801622925341.9691596-CDS-S-dermatodea_contig8422:6494..6880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8422 6495..6880 -
1694079868.3648112-CDS-S-dermatodea_contig8422:6494..68801694079868.3648112-CDS-S-dermatodea_contig8422:6494..6880Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8422 6495..6880 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.980444-UTR-S-dermatodea_contig8422:6880..69111622925341.980444-UTR-S-dermatodea_contig8422:6880..6911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8422 6881..6911 -
1694079868.3730555-UTR-S-dermatodea_contig8422:6880..69111694079868.3730555-UTR-S-dermatodea_contig8422:6880..6911Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8422 6881..6911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8422.16590.1

>prot_S-dermatodea_contig8422.16590.1 ID=prot_S-dermatodea_contig8422.16590.1|Name=mRNA_S-dermatodea_contig8422.16590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=146bp
MRPEDDTPPPDSFGDIEAWGRMEENNQAPPPEELVCFAETDYTAHGVHDA
VADGVNGCNVQDSETEKDDGSHTKDLQSAPVPRGAEDAALAYDRDVIGGD
GLAYGDGRAQPERGEDFLRGVLPAEACDSCQVTDPGGSAVNSPRGP
back to top

mRNA from alignment at S-dermatodea_contig8422:5736..6911-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8422.16590.1 ID=mRNA_S-dermatodea_contig8422.16590.1|Name=mRNA_S-dermatodea_contig8422.16590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1176bp|location=Sequence derived from alignment at S-dermatodea_contig8422:5736..6911- (Saccorhiza dermatodea SderLu1190fm monoicous)
CTGCCGCGCGCCCCACGAATCGCCGGGAGCAATGAGGCCGGAGGATGATA
CCCCACCCCCAGACAGTTTTGGAGACATTGAAGCTTGGGGACGGATGGAG
GAAAACAATCAGGCACCCCCGCCGGAGGAGCTTGTTTGCTTCGCCGAGAC
AGACTATACCGCTCATGGCGTCCACGACGCCGTGGCTGATGGCGTTAATG
GATGTAATGTTCAAGATAGCGAAACGGAAAAAGACGACGGCAGTCACACC
AAGGACCTCCAGAGCGCTCCTGTCCCGAGAGGTGCGGAGGATGCCGCGCT
CGCCTACGATCGGGATGTCATAGGCGGCGATGGGTTGGCGTATGGCGACG
GGCGGGCGCAGCCGGAGAGAGGGGAAGACTTTCTCAGGGGTGTGTTGCCT
GCGGAGGCGTGCGACAGGTATGCATGCCAGTCGATGTGCAACCCACAAAG
AGTCTGGAGCTTTCACTTCAAGTTGACCATGGTCCATGGTACTTTGCACG
GCTACGCGGCTAGGCGGGAAGGGGTTTCGCTTATGTCATCCGGTTTTTTC
GCCTGTTTTCCTCTCGTTGGAGGATTTCGAGCGCGAAAACCAGATTTGGG
GCGTTTCCTCCGGCGGTATAGCATGTGATTGTGTCTGGTTTTTACTAATG
GGTTGGAGTAGGTAGGGGGTCGTGCTCTAAGAGGATAGACCTATGGTGCT
AGCTTTGTTTCGCTGTTTTACGAGTGAAAAGTGTGTGCATCTCAAACGTG
TACATGTGGAGAGTGGCAACCCGAAAAGGGTGTTGTACTTTGCGCTGTGT
TTAGTGCCATGTGCGCTCGAGGTTCCTGTTAATAACCCCTCTCAAATCAT
GGCCTATCGAATGTTGCGCTACCTCCTCACGGCAAGAGGAATGGTCGTCC
GTGCCTTGTGCTTTACTTTTTTATGCTCTCCAATTTTGCTTTACCACAAC
AACGTTGTTCCTTTTGATATAACTCAAACCACTGTACACGGATCTCCCTT
TCCACTCAGGCGATTACTTAATTTAACCTGTATTGACATATCCCCGTGAT
AGCCTCCCCCAACAGCACGAAAAATTATTTCAAAAACACAGAGCCCCCCT
TGCTCGGCGTACCACGCTTTACAGCTGCCAAGTGACAGATCCTGGCGGCT
CCGCCGTTAACTCTCCTCGAGGGCCC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8422:5736..6911-

>mRNA_S-dermatodea_contig8422.16590.1 ID=mRNA_S-dermatodea_contig8422.16590.1|Name=mRNA_S-dermatodea_contig8422.16590.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at S-dermatodea_contig8422:5736..6911- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGAGGCCGGAGGATGATACCCCACCCCCAGACAGTTTTGGAGACATTGA
AGCTTGGGGACGGATGGAGGAAAACAATCAGGCACCCCCGCCGGAGGAGC
TTGTTTGCTTCGCCGAGACAGACTATACCGCTCATGGCGTCCACGACGCC
GTGGCTGATGGCGTTAATGGATGTAATGTTCAAGATAGCGAAACGGAAAA
AGACGACGGCAGTCACACCAAGGACCTCCAGAGCGCTCCTGTCCCGAGAG
GTGCGGAGGATGCCGCGCTCGCCTACGATCGGGATGTCATAGGCGGCGAT
GGGTTGGCGTATGGCGACGGGCGGGCGCAGCCGGAGAGAGGGGAAGACTT
TCTCAGGGGTGTGTTGCCTGCGGAGGCGTGCGACAGATGAGGCCGGAGGA
TGATACCCCACCCCCAGACAGTTTTGGAGACATTGAAGCTTGGGGACGGA
TGGAGGAAAACAATCAGGCACCCCCGCCGGAGGAGCTTGTTTGCTTCGCC
GAGACAGACTATACCGCTCATGGCGTCCACGACGCCGTGGCTGATGGCGT
TAATGGATGTAATGTTCAAGATAGCGAAACGGAAAAAGACGACGGCAGTC
ACACCAAGGACCTCCAGAGCGCTCCTGTCCCGAGAGGTGCGGAGGATGCC
GCGCTCGCCTACGATCGGGATGTCATAGGCGGCGATGGGTTGGCGTATGG
CGACGGGCGGGCGCAGCCGGAGAGAGGGGAAGACTTTCTCAGGGGTGTGT
TGCCTGCGGAGGCGTGCGACAGCTGCCAAGTGACAGATCCTGGCGGCTCC
GCCGTTAACTCTCCTCGAGGGCCCCTGCCAAGTGACAGATCCTGGCGGCT
CCGCCGTTAACTCTCCTCGAGGGCCC
back to top