mRNA_S-dermatodea_contig841.16581.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig841.16581.1
Unique NamemRNA_S-dermatodea_contig841.16581.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: D7G0Y8_ECTSI (Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Y8_ECTSI)

HSP 1 Score: 349 bits (895), Expect = 1.310e-118
Identity = 176/239 (73.64%), Postives = 199/239 (83.26%), Query Frame = 1
Query:    4 SGADVFLASFEPTFSDYLNETVGEVY-SVGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMTDQDLVPEWPLQAMPHVPADLVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLR 717
            +G + FL SFEPTFS YLN+TVGEVY  VGFIAVPLAFD+VWDAVS+A+VDFLFLNP SASCME  FGVS++LSLRN RQG EL  FGGV+ITAANR+DITE+AH++DK+VEGVS++GLGAFQLQWGLL+D G NLM D  EVR AYNQKKIVYDVI EN DVGFVRTDMVERMDAA        DLVPEWPLQA+ HVP+DL K V+ AL+ +N TH AA SG YSTWD PLSY+ LR
Sbjct:   16 TGTEAFLESFEPTFSAYLNQTVGEVYPGVGFIAVPLAFDDVWDAVSSASVDFLFLNPGSASCMESEFGVSAILSLRNFRQGNELNLFGGVVITAANRSDITEVAHLQDKVVEGVSVSGLGAFQLQWGLLQDQGFNLMADTEEVRFAYNQKKIVYDVINENVDVGFVRTDMVERMDAA--------DLVPEWPLQALSHVPSDLAKEVVGALLLINETHEAAVSGGYSTWDVPLSYADLR 246          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A7S3YSR5_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YSR5_9EUKA)

HSP 1 Score: 268 bits (686), Expect = 4.140e-80
Identity = 144/317 (45.43%), Postives = 207/317 (65.30%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYS--VGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMT---------------------DQDLVPEWPLQAMPHVPAD--LVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRLVK--LGILDYDAR----QCLESENVYGAIVCPTGFFKLSEEIVDSQCSDLASEH 864
            GA  F   F PTF DYLN+ VG +++  + F ++PL F   +  V    +DF++ NPS+ SC++  FG S+VL+LRNLR+G EL +FGG++ T AN  +IT+++ +KDK VE VSI+GLGA Q+QW L+ + G+NLMVDP++VR A+NQKKIV+DV   + DVGFVRTDM+E MDA GE +++                        L PEW L A+PH+ +D  +V+ V+ ALM  N++   + +  YSTW  PLSY  LR ++  LG +  D      +C+ S+++YGAIVCP+G+FKL+ EIV+ QC+ L SE+
Sbjct:   55 GAADFEKRFSPTFRDYLNQEVGPLFNPPITFESLPLNFSSTFTRVEAGTIDFVYTNPSAFSCLDSEFGASAVLTLRNLRRGQELTQFGGIIFTRANNTNITQLSDLKDKKVEAVSISGLGAAQMQWRLMTEKGMNLMVDPAQVRFAFNQKKIVHDVRRGDVDVGFVRTDMIEGMDANGETSLSYFKVIHKQNITYEGSPFPFQISTRLYPEWSLGALPHMNSDYKVVEEVINALMRTNSSSNCSKAAGYSTWQHPLSYMPLREMQQALGWIQQDPVTSNWKCMRSDDLYGAIVCPSGYFKLAREIVEQQCNVLGSEY 371          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A7S0DIN8_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DIN8_9EUKA)

HSP 1 Score: 257 bits (657), Expect = 1.470e-75
Identity = 141/311 (45.34%), Postives = 194/311 (62.38%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYS--VGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEIN---------------------MTDQDLVPEWPLQAMPHVPADLV--KAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRLVKLG---ILDYDA---RQCLESENVYGAIVCPTGFFKLSEEIVDSQCS 846
            G   F A F PTFS YL ETVG  ++  + F ++ L F   +  V  A+VDF++ NPS+ SC+E  F VS++++LRN RQG EL  FGG++ T ++  +I  IA ++ KIVE VSI+GLGA Q+QW LL+D G +LM  P +VR A+NQKKIV DV+  NADVGFVRTDM+E M + GE+N                     ++  +L PEW L  +PHV  D +  + V  ALM+++  H AA +G YSTW PPLSY  L  ++     I+  +    R C+ S N+Y AIVCP G+FKLS+++V SQC+
Sbjct:   48 GPTDFHARFSPTFSTYLTETVGPQFNPPIRFESIALDFSSTFTQVEQASVDFIYTNPSAFSCLESEFDVSAIVTLRNFRQGNELTRFGGIIFTRSDNDEINAIADLEGKIVEAVSISGLGAAQMQWKLLQDKGYSLMTLPKQVRFAFNQKKIVLDVLNGNADVGFVRTDMIEGMASKGEVNISSFKVIHQQNMTYEGRRFPFLSSTELYPEWSLGMLPHVGIDYMVSERVAFALMDIHKDHWAAKNGTYSTWQPPLSYMRLNEMQEDLNWIIKNETTGKRMCIRSSNLYDAIVCPDGYFKLSQDVVSSQCN 358          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A7S4CND3_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CND3_9EUGL)

HSP 1 Score: 214 bits (546), Expect = 2.230e-66
Identity = 102/182 (56.04%), Postives = 139/182 (76.37%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYSVGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMTD 552
            GA  F+  +EPT++ YLNETVG+  ++ F AVP+ F E +D V + A+DF++ NPS+ SC+E  +GV+ ++SLRN R+G+ L +FGG + T +NR DI  I  ++DKIVE VSITGLGA Q+QW L+ + G+N +VDP++V  A+NQKKIV DVIA NADVGFVRTDM E MD+AGEIN++D
Sbjct:    7 GAADFMKRWEPTYATYLNETVGKALNISFEAVPMNFAETFDLVGSKAIDFIYTNPSAFSCVESEYGVAPIVSLRNFRKGFTLNQFGGTIFTRSNRTDINTIHDLRDKIVEAVSITGLGACQMQWRLMIEKGINFLVDPAQVVFAFNQKKIVRDVIAGNADVGFVRTDMAEGMDSAGEINISD 188          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A7S1T0N3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T0N3_9CHLO)

HSP 1 Score: 223 bits (568), Expect = 5.120e-66
Identity = 124/303 (40.92%), Postives = 173/303 (57.10%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYSVG-FIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMTDQDLV------------------PEWPLQAMPHVPADLVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRLVKLGILDYDARQCLESENVYGAIVCPTGFFKLSEEIVDSQCSDLAS 858
            G +   A +  TFS YL  T G       F  V L FD  ++A  +  VD L++NPS  SC+E +FG +   +L N R+GY+L  F G + T ++R DI  +  +K KIVE VSI+GLGA QLQW  L  NGV+ ++DP +VR +YNQ+ IV DVIA +ADVG VRTD+ E M A G IN+TD  ++                  PEWPL ++PH   ++++ VM A+++L + H AA  G YS W  P+SY  +  +   +      +C+ SE+ Y AIVCP    KL  E V   C+D A+
Sbjct:   45 GEETLFAQWNATFSTYLTATAGAALGGRTFQLVYLDFDTAYEAAQHGCVDILYVNPSMYSCLELQFGAAVFATLINFRRGYDLDRFYGTIFTRSDREDIRTVEDLKGKIVEAVSISGLGACQLQWHELLLNGVDFLIDPKQVRFSYNQELIVQDVIAGHADVGMVRTDLAEGMAAEGLINITDIRVINQKDDTDFPFPYSTRLAAPEWPLASLPHTSIEVIEEVMYAVLQLESDHEAAVQGLYSGWRLPVSYLGMHQMMSKLNWIQNGECIRSEDTYDAIVCPEHHVKLPREKVAEACADQAA 347          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: D7G0S2_ECTSI (Periplasmic sensor diguanylate cyclase/phosphodiesterase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S2_ECTSI)

HSP 1 Score: 192 bits (487), Expect = 3.520e-58
Identity = 96/154 (62.34%), Postives = 116/154 (75.32%), Query Frame = 1
Query:  409 MVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMTDQDLVPEWPLQAMPHVPADLVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRL--VKLGILDYDARQCLESENVYGAIVCPTGFFKLSEEIVDSQCSDLASEH 864
            M D  EVR  YNQ+KIVYDVI  N DVGFVRTDMV+ MDAA        DLVPEWPLQA PHVP+DLVK V+ ALM +N TH AA SG YSTWD PLSY+ LR   V+LG+LD +   C++SENVYGA+VCP GFFK++E + DS+C++L S++
Sbjct:    1 MADTEEVRFTYNQEKIVYDVINGNIDVGFVRTDMVQLMDAA--------DLVPEWPLQAFPHVPSDLVKEVVRALMLINETHEAAVSGGYSTWDVPLSYADLRTLQVQLGVLDSEQGHCIQSENVYGAVVCPEGFFKIAENLFDSKCTELGSKY 146          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: F2UDV5_SALR5 (Guanylate cyclase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2UDV5_SALR5)

HSP 1 Score: 199 bits (507), Expect = 2.740e-54
Identity = 117/310 (37.74%), Postives = 175/310 (56.45%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYS--VGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEI------------NMTDQD----------LVPEWPLQAMPHVPADLVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRLVK--LGILDYDAR---QCLESENVYGAIVCPTGFFKLSEEIVDSQCSD 849
            G D F   F+  FS YL  T G  ++  V F A+P+AF +  ++VS   +DF + NP+  SC+E    ++ +L++RN R G+EL  F GV+ TAA+R DI  +  V+ K + GVS+T LG FQ+Q+G+L   G+ LM D + V  + N ++ V+DV+   AD+GFVRTD +E M A+G I            ++T +           L PEWP  A P V   + +AVM AL  LN + P +  G Y+ W P  SY SLR ++  LG+L+  +    +C + E++Y ++VCP GF   S E  D+ C +
Sbjct:   42 GVDYFEEHFKEGFSTYLTNTAGRTFNPPVTFNAIPVAFSDFVNSVSKGELDFTYCNPTLFSCIESGEEMAPLLTVRNFRLGHELTVFAGVIFTAASRDDINTLEDVRGKRLSGVSMTSLGGFQMQYGMLHVAGIELMTDFAMVAFSSNHRQTVHDVLEGAADIGFVRTDTIEGMIASGAIEADSLKVLNARESLTPEGTKFPFVHSTPLYPEWPFGAHPSVDWQVQEAVMKALQSLNASSPTSVQGQYAEWQPGFSYISLRNLQEELGLLEETSTGRFECRQGEDLYSSLVCPVGFVLKSREEFDTACEE 351          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A813FKL4_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FKL4_POLGL)

HSP 1 Score: 191 bits (484), Expect = 3.330e-51
Identity = 110/303 (36.30%), Postives = 167/303 (55.12%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYSVGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAG--------EINMTDQD---------LVPEWPLQAMPHVPADLVKAVMVALMELNNTHP------AATSGAYSTWDPPLSYSSLRLVKLGILDYDA--RQCLESENVYGAIVCPTGFFKLSEEIVDSQ 840
            G +VF   F PTF  YL   +   + + F+A+PL FD+ +D V  + +DF++ NP++ +CM   F +++V SL N R+G  L +F GV+   AN ++      +++  V  VSI+GLGA QLQ   L   G N+M D   +    NQ + V DV +  ADVGFVRTDM++ + A+G         +N    D           PEWP+ A+ HVP D+ + V+ ALM+L+   P       A  G++STW PP++Y  L  +   I  YD   R+CL + +VY A+ CP+G+ K S+++   Q
Sbjct:   59 GDEVFNQKFGPTFQTYLTTVLNASHGLEFVALPLNFDQNFDYVGASELDFIYSNPAAYTCMMVEFDLTTVASLMNFRKGNSLDKFAGVMFALANASEFNNTQDLRNARVSAVSISGLGAMQLQQAELLKQGFNIMTDTKRLTFTGNQGQTVQDVQSGYADVGFVRTDMIDSLVASGLTQWEYFKVLNEIPDDTFPFKRSTGFTPEWPIGALGHVPNDVKELVLRALMDLDRDSPNPLLSEPAIQGSFSTWVPPMNYLGLLSMLESISYYDPSQRKCLRNSDVYQAVACPSGYVKQSQDVAFCQ 361          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A813LHZ3_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813LHZ3_POLGL)

HSP 1 Score: 185 bits (470), Expect = 2.240e-50
Identity = 108/303 (35.64%), Postives = 163/303 (53.80%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYSVGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAAGEINMT-----------------DQDLVPEWPLQAMPHVPADLVKAVMVALMELNNTHP------AATSGAYSTWDPPLSYSSLRLVKLGILDYDA--RQCLESENVYGAIVCPTGFFKLSEEIVDSQ 840
            GA  F  SF PTF  YL   +   + + F+A+PL FD+ +D V  + +DF++ NP++ +CM   F +++V S+ N R+G  L +F GV+   AN ++      +++  V  VSI+GLGA QLQ   L + G N+M D   +    NQ KIV DV +  ADVGFVRTD++    A+G                        +  PEWP+ A+ HVP ++ + V  ALM+L+   P       A +G +STW PP++Y  L  +   I  YD   R+CL + +VY AI CP+G+   S+++   Q
Sbjct:   66 GAAAFNKSFGPTFQTYLTTVLNASHGLEFVALPLNFDQNFDYVRASELDFIYSNPAAYTCMMVEFKLTTVASMMNFRKGNSLDKFAGVIFARANASEFNNTQDLRNARVSAVSISGLGAMQLQQAELLEQGFNIMTDVKRLTFTGNQNKIVQDVQSGYADVGFVRTDLISGNVASGLTKWEYFKVLNEIPDGTFPFKRSTNFTPEWPIGALGHVPNEVKELVGRALMDLDRNSPNPLLSEPAINGGFSTWVPPMNYMDLLSMLESISYYDPSQRKCLRNSDVYQAIACPSGYVTQSQDVAFCQ 368          
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Match: A0A812RNW9_9DINO (TtrS protein n=1 Tax=Symbiodinium natans TaxID=878477 RepID=A0A812RNW9_9DINO)

HSP 1 Score: 186 bits (471), Expect = 1.900e-49
Identity = 114/300 (38.00%), Postives = 167/300 (55.67%), Query Frame = 1
Query:    7 GADVFLASFEPTFSDYLNETVGEVYSVGFIAVPLAFDEVWDAVSNAAVDFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADITEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQKKIVYDVIAENADVGFVRTDMVERMDAA-----------GEINMTD------QDLVPEWPLQAMPHVPADLVKAVMVALMELNNTHP------AATSGAYSTWDPPLSYSSL--RLVKLGILDYDARQCLESENVYGAIVCPTGFFKLSEEIV 831
            GA  F  S  PTF DYL   +   Y + F ++PL F++ ++ V    VDF++ NP++ +CM   F + +V SL N R+G  LG+F GV+ T  +    T +  +++ IVE VSI+GLGA QLQ   L   G+++M D   +  A+NQ KIV DV    ADVGFVRTD+++R  AA           G+I  TD       D  PEWP+ A+PHV A++ + V  +LM L+   P       A +G +++W  P++Y  L   L  +   D D ++CL S + Y AI CP+GF K + + V
Sbjct:  513 GAAAFETSLGPTFKDYLTRRLNASYGLEFESIPLDFNQNFEFVGAGQVDFIYSNPAAYTCMAVEFNLRTVASLINYRKGNALGQFAGVIFTRHDSPFHT-VDDLRNAIVEAVSISGLGAMQLQQAELLSQGLDIMTDVPRLVFAFNQNKIVQDVELGLADVGFVRTDLIDRNVAANKTKWEYFRVIGQIADTDFPFARSTDFTPEWPIGALPHVHAEVTELVARSLMSLDRFSPDPELSEPAIAGNFASWSTPMNYFGLLDMLRSIQYYDQDRKKCLRSSDEYEAINCPSGFVKKARDKV 811          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig841.16581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Y8_ECTSI1.310e-11873.64Diguanylate cyclase/phosphodiesterase with PAS/PAC... [more]
A0A7S3YSR5_9EUKA4.140e-8045.43Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
A0A7S0DIN8_9EUKA1.470e-7545.34Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S4CND3_9EUGL2.230e-6656.04Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A7S1T0N3_9CHLO5.120e-6640.92Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
D7G0S2_ECTSI3.520e-5862.34Periplasmic sensor diguanylate cyclase/phosphodies... [more]
F2UDV5_SALR52.740e-5437.74Guanylate cyclase n=1 Tax=Salpingoeca rosetta (str... [more]
A0A813FKL4_POLGL3.330e-5136.30Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813LHZ3_POLGL2.240e-5035.64Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A812RNW9_9DINO1.900e-4938.00TtrS protein n=1 Tax=Symbiodinium natans TaxID=878... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig841contigS-dermatodea_contig841:17758..20598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score354.0
Seed ortholog evalue6.7e-95
Seed eggNOG ortholog2880.D7G0Y8
EggNOG free text desc.ABC transporter, phosphonate, periplasmic substrate-binding protein
EggNOG OGs2CY75@1,2S2HA@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons6
Model size864
Cds size864
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig841.16581.1prot_S-dermatodea_contig841.16581.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig841 17758..20598 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925341.2971528-CDS-S-dermatodea_contig841:17757..179011622925341.2971528-CDS-S-dermatodea_contig841:17757..17901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 17758..17901 -
1694079867.8215497-CDS-S-dermatodea_contig841:17757..179011694079867.8215497-CDS-S-dermatodea_contig841:17757..17901Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 17758..17901 -
1622925341.3101058-CDS-S-dermatodea_contig841:18517..186851622925341.3101058-CDS-S-dermatodea_contig841:18517..18685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 18518..18685 -
1694079867.833358-CDS-S-dermatodea_contig841:18517..186851694079867.833358-CDS-S-dermatodea_contig841:18517..18685Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 18518..18685 -
1622925341.326023-CDS-S-dermatodea_contig841:19204..193031622925341.326023-CDS-S-dermatodea_contig841:19204..19303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19205..19303 -
1694079867.8514946-CDS-S-dermatodea_contig841:19204..193031694079867.8514946-CDS-S-dermatodea_contig841:19204..19303Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19205..19303 -
1622925341.3361995-CDS-S-dermatodea_contig841:19445..195771622925341.3361995-CDS-S-dermatodea_contig841:19445..19577Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19446..19577 -
1694079867.8628063-CDS-S-dermatodea_contig841:19445..195771694079867.8628063-CDS-S-dermatodea_contig841:19445..19577Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19446..19577 -
1622925341.3496943-CDS-S-dermatodea_contig841:19877..200001622925341.3496943-CDS-S-dermatodea_contig841:19877..20000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19878..20000 -
1694079867.8788564-CDS-S-dermatodea_contig841:19877..200001694079867.8788564-CDS-S-dermatodea_contig841:19877..20000Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 19878..20000 -
1622925341.3582735-CDS-S-dermatodea_contig841:20400..205981622925341.3582735-CDS-S-dermatodea_contig841:20400..20598Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 20401..20598 -
1694079867.891667-CDS-S-dermatodea_contig841:20400..205981694079867.891667-CDS-S-dermatodea_contig841:20400..20598Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig841 20401..20598 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig841.16581.1

>prot_S-dermatodea_contig841.16581.1 ID=prot_S-dermatodea_contig841.16581.1|Name=mRNA_S-dermatodea_contig841.16581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=288bp
FSGADVFLASFEPTFSDYLNETVGEVYSVGFIAVPLAFDEVWDAVSNAAV
DFLFLNPSSASCMERRFGVSSVLSLRNLRQGYELGEFGGVLITAANRADI
TEIAHVKDKIVEGVSITGLGAFQLQWGLLEDNGVNLMVDPSEVRLAYNQK
KIVYDVIAENADVGFVRTDMVERMDAAGEINMTDQDLVPEWPLQAMPHVP
ADLVKAVMVALMELNNTHPAATSGAYSTWDPPLSYSSLRLVKLGILDYDA
RQCLESENVYGAIVCPTGFFKLSEEIVDSQCSDLASEH
back to top

mRNA from alignment at S-dermatodea_contig841:17758..20598-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig841.16581.1 ID=mRNA_S-dermatodea_contig841.16581.1|Name=mRNA_S-dermatodea_contig841.16581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2841bp|location=Sequence derived from alignment at S-dermatodea_contig841:17758..20598- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCAGGTGCTGACGTATTCCTCGCATCCTTCGAGCCGACGTTCAGCGA CTATCTCAACGAGACCGTTGGCGAGGTCTACTCGGTTGGATTCATCGCTG TCCCGCTCGCCTTCGACGAAGTTTGGGACGCAGTTTCGAACGCCGCCGTA GACTTCCTGTTCTTGAACCCCAGCTCCGCTAGCTGCATGGAGAGGCGAGT GCAAGAAAAACCTTGAGGCACGCTTTAGTTGGTTACGTCAAACTACATAG GTTAAGTGCACGCCTTCCGGAAAGGTGACGATGGCGGCCTCCAGAAGCGT AGGCCGAAGCCATTCCCGCCTCTTGTTGCACCTTAGCGCTTCAACCGTTT CCACGGTTCTACACTTTGTCTTCGGCAGTAGAGCTGAGGCCGAGAAATGC TCTATGGCATTTGAAGTGCCGCCCCTCGTTACCACTGTAGTCGTTCGGCT TGACGGTAACGCCGCTTCCCTTAATGTGGCCGTCCTCTACCCGCGCCATC GTCTCACCCCCCCTGTTACCGCTGTCACGTGTATCAAACGGAAACTCGAA ATCGATAAACGAACGCTGCACCTGTACCGCTACTAACTCCTCAGCGAGTT CGGGGTATCGTCAGTGCTCTCGCTACGAAATCTTCGCCAGGGTTACGAGT TGGGCGAGTTCGGAGGAGTGCTAATCACCGCTGCCAACAGGGCAGACATC ACTGAGATCGCACACGTCAAGGTTTGATGCGTTTAGCGTGGTCTCCTCTT TTTGCTTGTATATTTGATCTGTGCTGTTCTCATAGGCGAGGCGATATGGC AGACCCATCGCATTTTTGCGAAAAACGTTTTACCGGGCGGTGTTACGGGA GTCAGTCGACGAAATAGACATTCAGCGAGGTCGTCGCCATACTAGTTATA CTTACATGGGGTTCTCGTGCTTCGTGAATTGTCCAAGCCCGACGGGTTAA CTCCACCAAGGCATCCATCAATTGCGAACCGATTGCCTGAGGGTCGCATT ATAATCCGAAACGCTCCGCAGGACAAGATCGTGGAGGGCGTATCCATCAC CGGCCTGGGGGCGTTTCAGCTTCAATGGGGTCTGTTGGAAGACAACGGCG TGAACCTCATGGTCGATCCATCTGAGGTCCGGCTTGCCTACAACCAGAAA AAGGTGCCACGCACAATCGCCTTTGATCTCTTTGCTTGGGCTTTGGATGT CGCCTGACCGAAAGAGCATACAGCCCGCCTCGACGATGTACCATGACTAC AGTACCACGACATGATTGATTCGGTCAATCCGCATGGTCCCTCAGATCGT TTATGACGTGATCGCCGAAAATGCCGACGTCGGGTTTGTGCGAACTGACA TGGTCGAGCGCATGGATGCCGCCGGGGAGATCAATATGACCGACGTCAAG TTCGTGGAACCTCGGGAGGACCTCGCAGAGGCCGGCTTCCCGTTTCCTTC CTCCACAGGTGCGTACGCCAGCAACACCCATGCATTGGGTGTTTCGTTCG CATTCCATTCGAGAAACGTGTCGTGTTTTTGTGCCGGGATCTCGATCCAT AACCCGTGATCTCGCCCTCACCCCCCAGCCCTCCCACGCCAAACCCAGCG CTGTCCTTATCAGGGGCAATGCTTAGTCAGGCAAGAGTTTTTGATAGTTA CCTTACGTGGGCGGCGATCGATTGATTCCAAACCCTCCCATTTTGTACGG CAACGAAGCTCCCCTGTCGTCCCATGTAAAGCCGAAAACCCTTCAAAACG CACCTTGAATAATTGTATGTGGTCTACGAGCACAATCAGGAAGAGACTTC CATATGCCGTTGAGAACGTATAAAATCTAGGAAAGCCAGGGCGGACGTGT CAATGAGTCCTCAAGATCCCCTTCCCCCGCGGTGCCCCGCGCTCGATCCC TCCCGGGACCAAGCAAGACCTGGTGCCCGAGTGGCCTCTGCAGGCAATGC CCCATGTGCCGGCTGATCTGGTGAAGGCCGTGATGGTCGCGTTGATGGAG CTTAATAATACACACCCGGCGGCGACTTCCGGCGCGTACTCCACGTGGGA CCCGCCTCTATCCTACTCCTCCCTCAGGCTAGTCGGTGATGGTTATGACC TTCTGAAAGGATATTTGCAGCACGTTTGTTTCAGTGTCATGGTGTGCAGA GTGATGGCGGAATGCGCTAGCACGGGAATGGTGGGGGGGGGGGGCTACTT ACTTATGTTAACGGGGGGTCTTTTCAATGTCTGGGCAGATGCCGAAGAGC ACAAGTCAGGCGAATAGGGATGCTGGATTGAAGACAAAGCGGTGCCTCGT AGATTCATCCACTTGAAAGGAAACGCACCCCCGACGAACGATCAACAAGA GTGAAACGCCGAGAGTATGTATGTCCAACGCAAAAACACTTCTGGCGCAG CGCAACCTGCGCGCAAAACAGAGTCAACCACAAAGTTTGCGACGATCTAG GGCCGGGACATTTGCAGAAAAACTGCGCTTTGAAGGTTACTGGTGACTCG CCGTCTTGCGTTGATCTTGATTCGAGAGGCAGCTCTCTCTCTCTTTCTCT CTCTCTCTCTCTCTCTCTCTCTCTTGGGCGGTGAACTTCGCGCAAGGCAC AGCAGCCGCTGTAATCAACATGCCTCTTTTCCGCTGGCAAAGGTACGGCA GCCTGTTTGTCCCGATGCTGTTCCGTCTTGTGTGCAGCTTCCTGCAGGTG AAGCTAGGCATTCTCGACTACGACGCGCGGCAATGCCTCGAGTCTGAGAA CGTATACGGCGCAATAGTGTGCCCCACCGGGTTCTTCAAACTCTCGGAGG AGATCGTCGACTCGCAGTGCTCGGACCTCGCCAGTGAGCAT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig841:17758..20598-

>mRNA_S-dermatodea_contig841.16581.1 ID=mRNA_S-dermatodea_contig841.16581.1|Name=mRNA_S-dermatodea_contig841.16581.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1728bp|location=Sequence derived from alignment at S-dermatodea_contig841:17758..20598- (Saccorhiza dermatodea SderLu1190fm monoicous)
TTTTCAGGTGCTGACGTATTCCTCGCATCCTTCGAGCCGACGTTCAGCGA
CTATCTCAACGAGACCGTTGGCGAGGTCTACTCGGTTGGATTCATCGCTG
TCCCGCTCGCCTTCGACGAAGTTTGGGACGCAGTTTCGAACGCCGCCGTA
GACTTCCTGTTCTTGAACCCCAGCTCCGCTAGCTGCATGGAGAGGCGATT
TTCAGGTGCTGACGTATTCCTCGCATCCTTCGAGCCGACGTTCAGCGACT
ATCTCAACGAGACCGTTGGCGAGGTCTACTCGGTTGGATTCATCGCTGTC
CCGCTCGCCTTCGACGAAGTTTGGGACGCAGTTTCGAACGCCGCCGTAGA
CTTCCTGTTCTTGAACCCCAGCTCCGCTAGCTGCATGGAGAGGCGATTCG
GGGTATCGTCAGTGCTCTCGCTACGAAATCTTCGCCAGGGTTACGAGTTG
GGCGAGTTCGGAGGAGTGCTAATCACCGCTGCCAACAGGGCAGACATCAC
TGAGATCGCACACGTCAAGTTCGGGGTATCGTCAGTGCTCTCGCTACGAA
ATCTTCGCCAGGGTTACGAGTTGGGCGAGTTCGGAGGAGTGCTAATCACC
GCTGCCAACAGGGCAGACATCACTGAGATCGCACACGTCAAGGACAAGAT
CGTGGAGGGCGTATCCATCACCGGCCTGGGGGCGTTTCAGCTTCAATGGG
GTCTGTTGGAAGACAACGGCGTGAACCTCATGGTCGATCCATCTGAGGTC
CGGCTTGCCTACAACCAGAAAAAGGACAAGATCGTGGAGGGCGTATCCAT
CACCGGCCTGGGGGCGTTTCAGCTTCAATGGGGTCTGTTGGAAGACAACG
GCGTGAACCTCATGGTCGATCCATCTGAGGTCCGGCTTGCCTACAACCAG
AAAAAGATCGTTTATGACGTGATCGCCGAAAATGCCGACGTCGGGTTTGT
GCGAACTGACATGGTCGAGCGCATGGATGCCGCCGGGGAGATCAATATGA
CCGACATCGTTTATGACGTGATCGCCGAAAATGCCGACGTCGGGTTTGTG
CGAACTGACATGGTCGAGCGCATGGATGCCGCCGGGGAGATCAATATGAC
CGACCAAGACCTGGTGCCCGAGTGGCCTCTGCAGGCAATGCCCCATGTGC
CGGCTGATCTGGTGAAGGCCGTGATGGTCGCGTTGATGGAGCTTAATAAT
ACACACCCGGCGGCGACTTCCGGCGCGTACTCCACGTGGGACCCGCCTCT
ATCCTACTCCTCCCTCAGGCTACAAGACCTGGTGCCCGAGTGGCCTCTGC
AGGCAATGCCCCATGTGCCGGCTGATCTGGTGAAGGCCGTGATGGTCGCG
TTGATGGAGCTTAATAATACACACCCGGCGGCGACTTCCGGCGCGTACTC
CACGTGGGACCCGCCTCTATCCTACTCCTCCCTCAGGCTAGTGAAGCTAG
GCATTCTCGACTACGACGCGCGGCAATGCCTCGAGTCTGAGAACGTATAC
GGCGCAATAGTGTGCCCCACCGGGTTCTTCAAACTCTCGGAGGAGATCGT
CGACTCGCAGTGCTCGGACCTCGCCAGTGAGCATGTGAAGCTAGGCATTC
TCGACTACGACGCGCGGCAATGCCTCGAGTCTGAGAACGTATACGGCGCA
ATAGTGTGCCCCACCGGGTTCTTCAAACTCTCGGAGGAGATCGTCGACTC
GCAGTGCTCGGACCTCGCCAGTGAGCAT
back to top