mRNA_S-dermatodea_contig83913.16563.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI) HSP 1 Score: 135 bits (341), Expect = 2.610e-35 Identity = 79/158 (50.00%), Postives = 98/158 (62.03%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFET-VEAPNGSSYRAVDCFNVRTDGSR------------SCQCEGDVIVYNSSCVY--GGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
VAALA++SMP TIR AL MS VQV+W +L AA GS AF V +G++Y +++C ++ S SC C G+VI +S C + G L FWL S W AV +NVV ATVAGSVASWWFSP D+R V+GAFYRA+HSSFG
Sbjct: 85 VAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTRSVRGAFYRATHSSFG 242
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.510e-34 Identity = 78/158 (49.37%), Postives = 97/158 (61.39%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFE-TVEAPNGSSYRAVDCFNVRTDGSR------------SCQCEGDVIVYNSSCVYGG--QSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
VAALA++SMP TIR AL MS VQV+W +L AA GS AF V +G++Y +++C ++ S SC C G+VI +S C + G L FWL S W AV +NVV ATVAGSVASWWFSP D+ V+GAFYRA+HSSFG
Sbjct: 282 VAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDITVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFG 439
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI) HSP 1 Score: 135 bits (340), Expect = 1.880e-34 Identity = 76/156 (48.72%), Postives = 96/156 (61.54%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGS------------RSCQCEGDVIVYNSSCVYGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPN-DSRPVQGAFYRASHSSFG 429
VA++AI+ MP T R A+LM VQ LWC++ +AA GS A ETV AP+GSS+RA+ C + G SC C G I + C + G L L + WL S WG V +NVVA TV+GSVASWWF+P DS PV+GAF+RA+ SSFG
Sbjct: 209 VASMAIRDMPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGDGGGGGEDVFAAQNSCVCNGTKIS-DGECEFSGLGLPLMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFG 363
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI) HSP 1 Score: 130 bits (327), Expect = 8.260e-34 Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFE-TVEAPNGSSYRAVDCFNV------------RTDGSRSCQCEGDVIVYNSSCVYGG---QSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
VAALA++SMP TI AL M ++V+W +L ++A GS AF V + +G++Y + C ++ T SC C G+VI +S C + G Q L +FW+ SF+WG V +VV ATVAGSVASWWFSP D+ V+GAFYRA+HSSFG
Sbjct: 91 VAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPGDTNSVRGAFYRATHSSFG 249
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A7S3MAD2_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAD2_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.020e-8 Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAF-ETVEAPNGSSYRAVDC--------FNVRT--------DGSRSCQCEGDVIVYNSSCV----YGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSR-PVQGAFYRASHSSFG 429
VA ++ MPS +ALL GVQVL+CI+ G+A G T+ +T +G Y +C F++ + D R+C C+G V N SCV YG +L L S W AV NVV T + +VA WW S VQ F A+ +S G
Sbjct: 124 VACASVLQMPSIFGYALLAVGVQVLFCIVWGMAVVGYATSNNQTTIHSHGLIYDLGECTTYVYSNTFDIASYGTLTCAGDACRACVCDG-TFVSNHSCVTPKLYGWTYTWLLL----SLFWTSAVISNVVHCTTSAAVAKWWVVGYPSALMVQEGFEAATTTSLG 283
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: K3W6P8_GLOUD (Choline transporter-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6P8_GLOUD) HSP 1 Score: 60.1 bits (144), Expect = 8.960e-8 Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 1
Query: 1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSS---CVYGGQSLF--------LKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
VA AI +T +L+ + VQ+ W ++ +A G +T E+ +G+ C S QCE + Y + CV +F F L SF WG VF+NV TVAG+VA++W+S + + RA+ +SFG
Sbjct: 191 VAEAAISKHKTTYCISLVFTVVQIAWVVVWSLALLGVANNMKTDESTSGTLVNGSRC-------SVDSQCESNACQYYNGTRQCVSSMSKVFKGSAETYVAYFFLLVSFYWGLQVFKNVAHTTVAGTVATFWYSSESAGATGASLKRATTTSFG 337
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A067CHQ4_SAPPC (Choline transporter-like protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHQ4_SAPPC) HSP 1 Score: 59.3 bits (142), Expect = 1.660e-7 Identity = 49/149 (32.89%), Postives = 67/149 (44.97%), Query Frame = 1
Query: 4 AALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLK-------LFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
AA AIK ST A M +Q++W + AA G +A SS R + DGS +C + + S Y ++ LK F L SF WG +NV ATVAG+VA+WW+S N + + R +SFG
Sbjct: 187 AAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDAT--SSTRG------KPDGS-TCSISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSAGATGASLKRTLTTSFG 326
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A485L1E1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1E1_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 2.260e-7 Identity = 45/145 (31.03%), Postives = 66/145 (45.52%), Query Frame = 1
Query: 13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASG-SMTAFETVEAPNGSSYRAVD--CFNVRTDGSRSC---QCEGDVIVYNSSCVYGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
AI+ PST A L +Q++W ++ G S ET ++ + A+ C + S +C QC N+ G S F L S WG VF N++ ATVAG+VA+WWFS + + RA+ +S G
Sbjct: 200 AIRKHPSTYLVAFLFLIIQIVWVFAWSISVVGISNKLTETTDSSVSTGTLAIGRTCSSNAVCASNNCVNRQCSEA----NTFSQLKGSSYAAYFFLLVSLYWGVQVFSNIIHATVAGTVATWWFSQDSKGATGASLGRATTTSLG 340
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A397EZJ6_9STRA (Choline transporter-like protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZJ6_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.070e-6 Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 1
Query: 13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLKL---------FWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFY-RASHSSFG 429
AI+ PST A + VQ+ W + A G P +S A R S C + Y +S V +++ +L F L SF WG VF+N++ ATVAG+VA+WWFS +DS+ GA RA+ +S G
Sbjct: 222 AIRKHPSTHVVAFVFLLVQIAWVFVWAFAVVGITNKLTENSTPAPTSRTATVASGGRCIASAQC-----LTNYCTSGVCKEPNVYAQLKSTSYVAYFFLLLSFFWGVQVFKNIIHATVAGTVATWWFS-SDSKGATGASLGRATTTSLG 364
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A397BUA5_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BUA5_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.110e-6 Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 1
Query: 13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLKL---------FWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFY-RASHSSFG 429
AI+ PST A + VQ+ W + A G P +S A R S C + Y +S V +++ +L F L SF WG VF+N++ ATVAG+VA+WWFS +DS+ GA RA+ +S G
Sbjct: 399 AIRKHPSTHVVAFVFLLVQIAWVFVWAFAVVGITNKLTENSTPAPTSRTATVASGGRCIASAQC-----LTNYCTSGVCKEPNVYAQLKSTSYVAYFFLLLSFFWGVQVFKNIIHATVAGTVATWWFS-SDSKGATGASLGRATTTSLG 541 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig83913.16563.1 >prot_S-dermatodea_contig83913.16563.1 ID=prot_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp MPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFback to top mRNA from alignment at S-dermatodea_contig83913:70..501- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig83913.16563.1 ID=mRNA_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig83913:70..501- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig83913:70..501- >mRNA_S-dermatodea_contig83913.16563.1 ID=mRNA_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig83913:70..501- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |