mRNA_S-dermatodea_contig83913.16563.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83913.16563.1
Unique NamemRNA_S-dermatodea_contig83913.16563.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM4_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM4_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.610e-35
Identity = 79/158 (50.00%), Postives = 98/158 (62.03%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFET-VEAPNGSSYRAVDCFNVRTDGSR------------SCQCEGDVIVYNSSCVY--GGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            VAALA++SMP TIR AL MS VQV+W +L   AA GS  AF   V   +G++Y +++C ++    S             SC C G+VI  +S C +  G     L  FWL S  W  AV +NVV ATVAGSVASWWFSP D+R V+GAFYRA+HSSFG
Sbjct:   85 VAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAWGSFAAFSPMVVGADGTTYSSLECQDIAVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSSGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTRSVRGAFYRATHSSFG 242          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM6_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.510e-34
Identity = 78/158 (49.37%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFE-TVEAPNGSSYRAVDCFNVRTDGSR------------SCQCEGDVIVYNSSCVYGG--QSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            VAALA++SMP TIR AL MS VQV+W +L   AA GS  AF   V   +G++Y +++C ++    S             SC C G+VI  +S C + G      L  FWL S  W  AV +NVV ATVAGSVASWWFSP D+  V+GAFYRA+HSSFG
Sbjct:  282 VAALAVRSMPGTIRLALFMSAVQVVWSMLSASAAGGSFAAFSPVVVGADGTTYSSLECQDITVPSSPYGGGETTAGSGLSCHCGGEVISSDSGCEFSGGFPRWVLAAFWLGSVTWVIAVLRNVVTATVAGSVASWWFSPGDTSSVRGAFYRATHSSFG 439          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D8LGQ1_ECTSI (Choline transporter-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGQ1_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 1.880e-34
Identity = 76/156 (48.72%), Postives = 96/156 (61.54%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGS------------RSCQCEGDVIVYNSSCVYGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPN-DSRPVQGAFYRASHSSFG 429
            VA++AI+ MP T R A+LM  VQ LWC++  +AA GS  A ETV AP+GSS+RA+ C +    G              SC C G  I  +  C + G  L L + WL S  WG  V +NVVA TV+GSVASWWF+P  DS PV+GAF+RA+ SSFG
Sbjct:  209 VASMAIRDMPWTYRSAILMGIVQFLWCMVAAIAALGSFVALETVAAPDGSSHRAIYCLDFADGGDGGGGGEDVFAAQNSCVCNGTKIS-DGECEFSGLGLPLMMVWLCSMAWGCGVIRNVVACTVSGSVASWWFTPEEDSTPVKGAFHRATTSSFG 363          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: D7FHM5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHM5_ECTSI)

HSP 1 Score: 130 bits (327), Expect = 8.260e-34
Identity = 73/159 (45.91%), Postives = 98/159 (61.64%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFE-TVEAPNGSSYRAVDCFNV------------RTDGSRSCQCEGDVIVYNSSCVYGG---QSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            VAALA++SMP TI  AL M  ++V+W +L  ++A GS  AF   V + +G++Y  + C ++             T    SC C G+VI  +S C + G   Q   L +FW+ SF+WG  V  +VV ATVAGSVASWWFSP D+  V+GAFYRA+HSSFG
Sbjct:   91 VAALAVRSMPGTIYLALFMGAMRVVWFMLSALSAVGSFVAFSPVVVSADGTTYSFLGCQDIVVSSSPYGGGEATTGSGLSCHCGGEVISSDSGCEFSGGGFQRWVLGVFWVGSFIWGLDVLHDVVLATVAGSVASWWFSPGDTNSVRGAFYRATHSSFG 249          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A7S3MAD2_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MAD2_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.020e-8
Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAF-ETVEAPNGSSYRAVDC--------FNVRT--------DGSRSCQCEGDVIVYNSSCV----YGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSR-PVQGAFYRASHSSFG 429
            VA  ++  MPS   +ALL  GVQVL+CI+ G+A  G  T+  +T    +G  Y   +C        F++ +        D  R+C C+G   V N SCV    YG    +L L    S  W  AV  NVV  T + +VA WW     S   VQ  F  A+ +S G
Sbjct:  124 VACASVLQMPSIFGYALLAVGVQVLFCIVWGMAVVGYATSNNQTTIHSHGLIYDLGECTTYVYSNTFDIASYGTLTCAGDACRACVCDG-TFVSNHSCVTPKLYGWTYTWLLL----SLFWTSAVISNVVHCTTSAAVAKWWVVGYPSALMVQEGFEAATTTSLG 283          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: K3W6P8_GLOUD (Choline transporter-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3W6P8_GLOUD)

HSP 1 Score: 60.1 bits (144), Expect = 8.960e-8
Identity = 46/154 (29.87%), Postives = 70/154 (45.45%), Query Frame = 1
Query:    1 VAALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSS---CVYGGQSLF--------LKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            VA  AI    +T   +L+ + VQ+ W ++  +A  G     +T E+ +G+      C       S   QCE +   Y +    CV     +F           F L SF WG  VF+NV   TVAG+VA++W+S   +     +  RA+ +SFG
Sbjct:  191 VAEAAISKHKTTYCISLVFTVVQIAWVVVWSLALLGVANNMKTDESTSGTLVNGSRC-------SVDSQCESNACQYYNGTRQCVSSMSKVFKGSAETYVAYFFLLVSFYWGLQVFKNVAHTTVAGTVATFWYSSESAGATGASLKRATTTSFG 337          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A067CHQ4_SAPPC (Choline transporter-like protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHQ4_SAPPC)

HSP 1 Score: 59.3 bits (142), Expect = 1.660e-7
Identity = 49/149 (32.89%), Postives = 67/149 (44.97%), Query Frame = 1
Query:    4 AALAIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLK-------LFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            AA AIK   ST   A  M  +Q++W  +   AA G        +A   SS R       + DGS +C    + +    S  Y  ++  LK        F L SF WG    +NV  ATVAG+VA+WW+S N +     +  R   +SFG
Sbjct:  187 AAAAIKKHASTYCVAFSMLVLQIVWVAVWATAALGLANHLNEKDAT--SSTRG------KPDGS-TCSISSECMSNKCSATYRCEAAGLKSASYVAYFFMLISFFWGMQTIKNVTHATVAGTVATWWYSTNSAGATGASLKRTLTTSFG 326          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A485L1E1_9STRA (Choline transporter-like protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L1E1_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.260e-7
Identity = 45/145 (31.03%), Postives = 66/145 (45.52%), Query Frame = 1
Query:   13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASG-SMTAFETVEAPNGSSYRAVD--CFNVRTDGSRSC---QCEGDVIVYNSSCVYGGQSLFLKLFWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG 429
            AI+  PST   A L   +Q++W     ++  G S    ET ++   +   A+   C +     S +C   QC       N+     G S     F L S  WG  VF N++ ATVAG+VA+WWFS +       +  RA+ +S G
Sbjct:  200 AIRKHPSTYLVAFLFLIIQIVWVFAWSISVVGISNKLTETTDSSVSTGTLAIGRTCSSNAVCASNNCVNRQCSEA----NTFSQLKGSSYAAYFFLLVSLYWGVQVFSNIIHATVAGTVATWWFSQDSKGATGASLGRATTTSLG 340          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A397EZJ6_9STRA (Choline transporter-like protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZJ6_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.070e-6
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 1
Query:   13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLKL---------FWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFY-RASHSSFG 429
            AI+  PST   A +   VQ+ W  +   A  G          P  +S  A      R   S  C     +  Y +S V    +++ +L         F L SF WG  VF+N++ ATVAG+VA+WWFS +DS+   GA   RA+ +S G
Sbjct:  222 AIRKHPSTHVVAFVFLLVQIAWVFVWAFAVVGITNKLTENSTPAPTSRTATVASGGRCIASAQC-----LTNYCTSGVCKEPNVYAQLKSTSYVAYFFLLLSFFWGVQVFKNIIHATVAGTVATWWFS-SDSKGATGASLGRATTTSLG 364          
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Match: A0A397BUA5_9STRA (Choline transporter-like protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397BUA5_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.110e-6
Identity = 49/149 (32.89%), Postives = 69/149 (46.31%), Query Frame = 1
Query:   13 AIKSMPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCFNVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLKL---------FWLASFVWGGAVFQNVVAATVAGSVASWWFSPNDSRPVQGAFY-RASHSSFG 429
            AI+  PST   A +   VQ+ W  +   A  G          P  +S  A      R   S  C     +  Y +S V    +++ +L         F L SF WG  VF+N++ ATVAG+VA+WWFS +DS+   GA   RA+ +S G
Sbjct:  399 AIRKHPSTHVVAFVFLLVQIAWVFVWAFAVVGITNKLTENSTPAPTSRTATVASGGRCIASAQC-----LTNYCTSGVCKEPNVYAQLKSTSYVAYFFLLLSFFWGVQVFKNIIHATVAGTVATWWFS-SDSKGATGASLGRATTTSLG 541          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83913.16563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
D7FHM4_ECTSI2.610e-3550.00Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D7FHM6_ECTSI1.510e-3449.37Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
D8LGQ1_ECTSI1.880e-3448.72Choline transporter-like protein n=2 Tax=Ectocarpu... [more]
D7FHM5_ECTSI8.260e-3445.91Choline transporter-like protein n=1 Tax=Ectocarpu... [more]
A0A7S3MAD2_9STRA1.020e-834.55Choline transporter-like protein (Fragment) n=1 Ta... [more]
K3W6P8_GLOUD8.960e-829.87Choline transporter-like protein n=1 Tax=Globispor... [more]
A0A067CHQ4_SAPPC1.660e-732.89Choline transporter-like protein n=2 Tax=Saprolegn... [more]
A0A485L1E1_9STRA2.260e-731.03Choline transporter-like protein n=1 Tax=Aphanomyc... [more]
A0A397EZJ6_9STRA1.070e-632.89Choline transporter-like protein n=7 Tax=Aphanomyc... [more]
A0A397BUA5_9STRA1.110e-632.89Choline transporter-like protein (Fragment) n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83913contigS-dermatodea_contig83913:70..501 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue2.9e-32
Seed eggNOG ortholog2880.D7FN10
EggNOG free text desc.choline transmembrane transporter activity
EggNOG OGsKOG1362@1,KOG1362@2759
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons1
Model size432
Cds size408
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.604666-CDS-S-dermatodea_contig83913:69..4771622925339.604666-CDS-S-dermatodea_contig83913:69..477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83913 70..477 -
1694079866.429844-CDS-S-dermatodea_contig83913:69..4771694079866.429844-CDS-S-dermatodea_contig83913:69..477Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83913 70..477 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.6194408-UTR-S-dermatodea_contig83913:477..5011622925339.6194408-UTR-S-dermatodea_contig83913:477..501Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83913 478..501 -
1694079866.4451668-UTR-S-dermatodea_contig83913:477..5011694079866.4451668-UTR-S-dermatodea_contig83913:477..501Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig83913 478..501 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83913.16563.1prot_S-dermatodea_contig83913.16563.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83913 70..477 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83913.16563.1

>prot_S-dermatodea_contig83913.16563.1 ID=prot_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=136bp
MPSTIRFALLMSGVQVLWCILVGVAASGSMTAFETVEAPNGSSYRAVDCF
NVRTDGSRSCQCEGDVIVYNSSCVYGGQSLFLKLFWLASFVWGGAVFQNV
VAATVAGSVASWWFSPNDSRPVQGAFYRASHSSFG*
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mRNA from alignment at S-dermatodea_contig83913:70..501-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83913.16563.1 ID=mRNA_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig83913:70..501- (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGGCTGCCCTGGCGATCAAGTCCATGCCCTCGACCATTAGGTTCGCCCT CCTAATGAGCGGAGTCCAGGTCCTCTGGTGCATCCTCGTCGGAGTCGCCG CGTCAGGCTCGATGACTGCCTTCGAGACCGTTGAGGCCCCGAACGGCTCT TCATACCGTGCGGTCGACTGCTTCAACGTCCGCACGGACGGCTCGAGGTC CTGCCAGTGCGAGGGCGACGTCATCGTGTACAACTCGTCGTGCGTGTACG GCGGTCAGAGCCTGTTCCTGAAGTTGTTCTGGCTGGCTAGCTTCGTGTGG GGTGGGGCCGTGTTTCAGAACGTCGTGGCGGCCACCGTGGCAGGGTCGGT CGCTTCCTGGTGGTTTTCCCCTAACGACAGCAGGCCCGTCCAGGGCGCGT TTTACCGCGCGAGTCACTCCTCTTTCGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83913:70..501-

>mRNA_S-dermatodea_contig83913.16563.1 ID=mRNA_S-dermatodea_contig83913.16563.1|Name=mRNA_S-dermatodea_contig83913.16563.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=816bp|location=Sequence derived from alignment at S-dermatodea_contig83913:70..501- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCCTCGACCATTAGGTTCGCCCTCCTAATGAGCGGAGTCCAGGTCCT
CTGGTGCATCCTCGTCGGAGTCGCCGCGTCAGGCTCGATGACTGCCTTCG
AGACCGTTGAGGCCCCGAACGGCTCTTCATACCGTGCGGTCGACTGCTTC
AACGTCCGCACGGACGGCTCGAGGTCCTGCCAGTGCGAGGGCGACGTCAT
CGTGTACAACTCGTCGTGCGTGTACGGCGGTCAGAGCCTGTTCCTGAAGT
TGTTCTGGCTGGCTAGCTTCGTGTGGGGTGGGGCCGTGTTTCAGAACGTC
GTGGCGGCCACCGTGGCAGGGTCGGTCGCTTCCTGGTGGTTTTCCCCTAA
CGACAGCAGGCCCGTCCAGGGCGCGTTTTACCGCGCGAGTCACTCCTCTT
TCGGGTGAATGCCCTCGACCATTAGGTTCGCCCTCCTAATGAGCGGAGTC
CAGGTCCTCTGGTGCATCCTCGTCGGAGTCGCCGCGTCAGGCTCGATGAC
TGCCTTCGAGACCGTTGAGGCCCCGAACGGCTCTTCATACCGTGCGGTCG
ACTGCTTCAACGTCCGCACGGACGGCTCGAGGTCCTGCCAGTGCGAGGGC
GACGTCATCGTGTACAACTCGTCGTGCGTGTACGGCGGTCAGAGCCTGTT
CCTGAAGTTGTTCTGGCTGGCTAGCTTCGTGTGGGGTGGGGCCGTGTTTC
AGAACGTCGTGGCGGCCACCGTGGCAGGGTCGGTCGCTTCCTGGTGGTTT
TCCCCTAACGACAGCAGGCCCGTCCAGGGCGCGTTTTACCGCGCGAGTCA
CTCCTCTTTCGGGTGA
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