mRNA_S-dermatodea_contig839.16562.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig839.16562.1
Unique NamemRNA_S-dermatodea_contig839.16562.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE)

HSP 1 Score: 228 bits (582), Expect = 6.580e-65
Identity = 122/279 (43.73%), Postives = 172/279 (61.65%), Query Frame = 3
Query:  471 G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
            G G + WLDDIA+  KT+E+ + LL   L  L+Q   T +  KS F    +EF+G++VGR GTRPAPSK+ A+ ++  P+TV E+R         R FVP++S +AAP+SD++R   F +KRA+ + V  G  Q + +  L+E L + P+L +P W EPF L+T+AS + A +V TQ ++  E      SKR SR +   S+  R  +  ++A+  F+ +L  R FTLITDC     L TSQ  S K HRW L++M YDM LKWR GT H +PDA+SRL
Sbjct:  236 GKGLEKWLDDIALHTKTLEEHFVLLEKVLTILKQKGYTGHFVKSEFLLPELEFLGVMVGRDGTRPAPSKVKAVQEMELPSTVGELRSFLGLANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVENREAPVGYASKRLSRSEEKLSSNDREVLGVLYALEHFKVYLQHRQFTLITDCAALMWLFTSQKLSSKMHRWALKMMAYDMVLKWRKGTDHVVPDALSRL 514          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE)

HSP 1 Score: 228 bits (580), Expect = 1.770e-62
Identity = 121/277 (43.68%), Postives = 167/277 (60.29%), Query Frame = 3
Query:  477 GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
            G + WLDDI +   T+E+   L+    + L+    +V+ +KS F  S +EF+G +VGR G RPAPSKI A+ +L  P TV EVR         R FVP +ST+ API+DL+R   F +KRA+   VPWG  Q + F  +I+AL + P+LA P W  PF L+T+ASE+ A AV TQ ++  E      S R++R +   SA  R  +  ++ + +F  +L  R FTL+TDC     L TSQ  S K HRW+LRLM++D+ LKWR G  H  PDA+SRL
Sbjct:  270 GVERWLDDILLHSATLEEHMALIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVENREAPLGYASHRFTRAEEKLSANDREVLGVLYGIEQFHTYLQHRRFTLVTDCAALTWLFTSQNLSSKMHRWSLRLMQFDIDLKWRKGEDHTAPDALSRL 546          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 3.450e-62
Identity = 120/269 (44.61%), Postives = 163/269 (60.59%), Query Frame = 3
Query:  486 NWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLKRQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCCLCT----SQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
            +WLDDI +  +T E+    L   L  LR   L+VN  K  F  S  EF+G+I+   G  PAPSK++AI  + RP TVE++R L          VAAP++D++R   F +KRA+K  + WGQ +   F+ L + LASP +LA P    PF L+++AS VGA A   Q IDG  ++ A  S ++SR D+ R  T R CM  +W V+ F+P+L+GR F ++TDC   T    S+   PK HRW LRLMEYD+ L+WR G  H LPDA+SRLP
Sbjct:  468 SWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTL----------VAAPLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQTIDGTPRIIAFASHKFSRTDARRGPTERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGLEWRAGVHHVLPDALSRLP 726          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE)

HSP 1 Score: 223 bits (569), Expect = 1.150e-60
Identity = 115/278 (41.37%), Postives = 172/278 (61.87%), Query Frame = 3
Query:  477 GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCCLCT----SQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
            G + WLDDI I  +T+E+    +   L+ L++   +V+  KS F    +EF+G++VGR G RP PSKI AIT++ +P TV  +R         R FV  +S + AP++D++R   F TKRA+  ++PWG+EQ+   + +I AL SPP+L  P W  PF L+T+ASE  A AV TQ ++  +     GS RW++ ++ R+ T R   AA++ +  F+ +L  + FTL+TDC   T    SQ  S   +R+ LR+ME+ MTL+WR GT+H +PDA+SRLP
Sbjct:  964 GIERWLDDILIHSETLEEHLKKIDEVLKLLQEAGFSVHFDKSLFCMQEVEFLGVMVGRSGVRPPPSKIKAITEMEKPTTVGGLRSFVGMANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDHDTAIGFGSHRWTQSEAKRAPTDREVRAALFGLEHFRIYLLHQPFTLVTDCSAITWLFQSQHLSSTMYRYALRMMEFTMTLQWRKGTEHTIPDALSRLP 1241          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 5.490e-54
Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 3
Query:  471 G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQK-SHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
            G G + WLDD+ +   T E+   L+R  ++ L     T N QK S F  S +EF+G++VGR G RPAPSKI+A+ +L+ P  V EVR         R FVP++S + AP+S+L+R P F +K+A+ + VPWG EQ + F  +IE L + P+L +P W++PF ++T+AS +   AV TQ +DG                  R+AT    +  + AV  F+ +L  R  T+ITDC     L TSQ  S K HRW L+LM YDM LKWR GT++  PDA+S L
Sbjct: 1066 GKGVEKWLDDMGLHSATFEEHLELVRTVVKILIARGYTGNFQKKSEFFLSEIEFLGVMVGRDGVRPAPSKINAVQELAIPTNVGEVRSFLGLAGSLRGFVPNFSAITAPVSNLLRNPAFSSKKARLKKVPWGSEQAEAFLKIIELLTTHPVLILPDWSQPFTVHTDASTLATGAVLTQEVDG------------------RAATDPEVLGVLHAVEHFEIYLQHRQLTVITDCSALLWLFTSQHLSSKMHRWALKLMAYDMVLKWRRGTENVGPDALSHL 1327          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE)

HSP 1 Score: 184 bits (468), Expect = 2.880e-47
Identity = 113/281 (40.21%), Postives = 156/281 (55.52%), Query Frame = 3
Query:  399 VQLRVEDSAIRVCPLHGRAT---DTSQ--G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACG--SKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHR 1190
            +Q  V    I   P    AT   D  +  G G +NWLDDI +   T E+   L+R  ++ L     T N QKS F  S +EF+G+++GR G RPAPSKI A+ +L+ P  V EVR         R FVP++S + AP+S+++R P F +K+A+ + VPWG EQ +DF  +IE L +  IL +P W++PF ++ +AS +   AV TQ +DG  +    G  SKR SR     SA  R  +  +  V  F+ +L  R FTLITDC     L TSQ  S K HR
Sbjct:  840 LQWNVSSFGITTIPAFFSATLGDDLREEIGKGVENWLDDIGLHSATFEEHLELVRRVVKILIARGYTGNFQKSEFFLSEIEFLGVMLGRDGVRPAPSKIKAVQELAIPTNVGEVRSFLGLAGYLRGFVPNFSAIRAPVSNILRNPAFSSKKARLKKVPWGSEQTEDFLKIIELLTTHSILILPDWSQPFTVHADASNLATGAVLTQEVDGGARHRPVGYHSKRLSRAQQNASANDREFLGVLHVVEHFEIYLQHRQFTLITDCSALLWLFTSQHLSSKMHR 1120          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A224XDN8_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XDN8_9HEMI)

HSP 1 Score: 164 bits (415), Expect = 2.130e-40
Identity = 94/272 (34.56%), Postives = 147/272 (54.04%), Query Frame = 3
Query:  489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITD--CCLCTSQTFSP--KYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSR 1274
            +LDDI +  +  +D    L   L  LR   L+VN +K+   +S + ++G +V R G    PSK++AI    +P TV ++R         R+FVPH+ST+++P++DL+R         K +   W   Q+K F  L E L + P+L  P +  PFLL T+AS+ G  A+ +Q ++  EK  A  S+  +R +   S T   C+A +WAV KF+P+L G  FT+ITD    L       P  +  RW +++ +Y   +  RPG Q++  DA+SR
Sbjct:  379 YLDDIVVITQDFQDHLHTLEQVLTRLRNAGLSVNWEKAQICRSELAYLGYVVDRDGLHVDPSKVEAILNFPQPRTVRQLRRFLGLASWYRRFVPHFSTISSPLTDLLR---------KNKKWHWTDNQDKAFKELKEVLVTAPVLTCPDFNHPFLLQTDASQSGLGAILSQNLEEGEKPIAFASRSLTRNEKNFSTTELECLAVLWAVEKFRPYLEGIEFTVITDHRALLWLKSLKDPQGRLARWAMKIQQYQFNIIHRPGKQNEAADALSR 641          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A023EXS9_TRIIF (RNA-directed DNA polymerase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023EXS9_TRIIF)

HSP 1 Score: 163 bits (412), Expect = 5.300e-40
Identity = 90/273 (32.97%), Postives = 147/273 (53.85%), Query Frame = 3
Query:  489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITD----CCLCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
            +LDDI +  +  ++    L      L    LTVN +K+   +S + ++G +V + G    P+K+ AI    +P TV ++R         R+FVPH+S+V AP+++L++         K +   WG+ Q + F  L E L + P+L  P ++ PF+L T+AS  G  A+ +Q  D  EK  A  S+  +R +   S T + C+A MWA+ KF+P+L G  FT+ITD      L   +    +  RW +++ +Y  ++K RPGTQ+   DA+SR+
Sbjct:  384 YLDDIIVVTRDFKEHLETLEKVFSRLHNAGLTVNWEKTRVCRSELPYLGYVVDQQGLHVDPNKVSAILNFPQPKTVRQLRRFLGLASWYRRFVPHFSSVCAPLTELLK---------KHKKWKWGESQEQGFKDLKEILVAAPVLTCPDFSRPFILQTDASSSGLGAILSQEFDEGEKPIAFASRSLTRNEKNFSTTEQECLAVMWAIEKFRPYLEGADFTVITDHRALVWLKNLKDPQGRLARWAIKMQQYQFSIKHRPGTQNAAADALSRV 647          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A3B1IDL1_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IDL1_ASTMX)

HSP 1 Score: 160 bits (405), Expect = 4.680e-39
Identity = 100/301 (33.22%), Postives = 156/301 (51.83%), Query Frame = 3
Query:  408 RVEDSAIRVCPLHGRATDTSQG*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
            R+ D  +R C     A           +LDD+ +   +  +    L   L+ L +  LT N  K H   S  +++G  +GR   RP  SK  AI    RP T  +VR         R+FVP++S++A P++D+       TK+ + E V W  +  K F  L EAL S P+L  P +++PF+++T+ASE+G  AV +Q +DG+E      SK+ +  +   +A  R  +A  WA+N+ + +L GR FTL+TD      L  ++  + K  RW L L +++ +L  RPG+ H   DA+SRLP
Sbjct:  904 RLMDVVLRPCRAFAAA-----------YLDDVVVHSTSWAEHLVHLSKVLDALLEAGLTANPAKCHLGLSEAQYLGYSIGRGILRPQESKTAAIKDCPRPTTKTQVRAFLGLAGYYRRFVPNFSSIAVPLTDM-------TKKRQPEEVQWSTDAEKAFTQLKEALTSAPVLRNPDFSQPFIVHTDASEIGLGAVLSQEVDGMEHPILFLSKKLNPTERRYAAIEREALAIKWALNELRFYLLGRPFTLVTDHAPLQWLANAKDTNAKITRWFLSLQDFNFSLLHRPGSLHGNADALSRLP 1186          
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A146KR86_LYGHE (RNA-directed DNA polymerase (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A146KR86_LYGHE)

HSP 1 Score: 160 bits (404), Expect = 6.410e-39
Identity = 98/274 (35.77%), Postives = 151/274 (55.11%), Query Frame = 3
Query:  489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDC----CLCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
            +LDD+ +  +T E+   LL   ++ L +  LTVNL+K    +S + F+G +V   G R +  K+ AI +  R  +  EVR         R+FVP++S VA+P+SDL+       K+ KK S  W  +  K F  L   L S P+L+VP +  PF++ T+AS  G  AV +Q     EKV A  S++ S  +   S     C+  +WAV +F+P++ G +FT+ITD      L + +  SP+  RW LRL  YD  +++R G  +++PDA+SR P
Sbjct:  592 YLDDLVMVSQTWEEHASLLNQVIDRLERANLTVNLEKCELFRSSLTFLGYVVDEQGLRASEQKVKAIVEFPRMQSQREVRRFLGICNYYRRFVPNFSKVASPLSDLL-------KKGKKFS--WSLDCEKAFAELKTLLTSAPVLSVPDFDLPFVIQTDASLDGLGAVISQKFPDGEKVIAYASRKLSNAERKWSVIELECLGILWAVERFRPYVEGTSFTVITDHHSLKWLNSLKDPSPRLTRWALRLQAYDFKIEYRKGGLNKVPDALSRAP 856          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF70_9PHAE6.580e-6543.73Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LHQ7_9PHAE1.770e-6243.68Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBF4_9PHAE3.450e-6244.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KHG6_9PHAE1.150e-6041.37Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KW13_9PHAE5.490e-5441.79Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K3V4_9PHAE2.880e-4740.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A224XDN8_9HEMI2.130e-4034.56RNA-directed DNA polymerase (Fragment) n=1 Tax=Pan... [more]
A0A023EXS9_TRIIF5.300e-4032.97RNA-directed DNA polymerase (Fragment) n=1 Tax=Tri... [more]
A0A3B1IDL1_ASTMX4.680e-3933.22Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=79... [more]
A0A146KR86_LYGHE6.410e-3935.77RNA-directed DNA polymerase (Fragment) n=4 Tax=Lyg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig839contigS-dermatodea_contig839:16250..17532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score77.8
Seed ortholog evalue3.8e-12
Seed eggNOG ortholog3827.XP_004488407.1
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs37RRH@33090,3G8MV@35493,4JM10@91835,COG2801@1,KOG0017@2759
COG Functional cat.H
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1283
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig839.16562.1prot_S-dermatodea_contig839.16562.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig839 16256..16606 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.5430567-UTR-S-dermatodea_contig839:16249..162551622925339.5430567-UTR-S-dermatodea_contig839:16249..16255Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig839 16250..16255 +
1694079866.4009268-UTR-S-dermatodea_contig839:16249..162551694079866.4009268-UTR-S-dermatodea_contig839:16249..16255Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig839 16250..16255 +
1622925339.5695415-UTR-S-dermatodea_contig839:16606..175321622925339.5695415-UTR-S-dermatodea_contig839:16606..17532Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig839 16607..17532 +
1694079866.4203634-UTR-S-dermatodea_contig839:16606..175321694079866.4203634-UTR-S-dermatodea_contig839:16606..17532Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig839 16607..17532 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925339.5555482-CDS-S-dermatodea_contig839:16255..166061622925339.5555482-CDS-S-dermatodea_contig839:16255..16606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig839 16256..16606 +
1694079866.4115028-CDS-S-dermatodea_contig839:16255..166061694079866.4115028-CDS-S-dermatodea_contig839:16255..16606Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig839 16256..16606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig839.16562.1

>prot_S-dermatodea_contig839.16562.1 ID=prot_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp
MRLELKDPNVKPYVAPIRHYSPEQQKMIQAEVAKLLKNGSIRESTSEWAA
NCSTVRKKDGTMRVVQDFRGLNALLESQSGRLGDLEHIMDEMEGSKCFPN
IGLASGFLPLEIYEDD*
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mRNA from alignment at S-dermatodea_contig839:16250..17532+

Legend: UTRpolypeptideCDS
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>mRNA_S-dermatodea_contig839.16562.1 ID=mRNA_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1283bp|location=Sequence derived from alignment at S-dermatodea_contig839:16250..17532+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTGACAATGCGACTGGAGCTCAAGGACCCCAACGTCAAGCCGTATGTGGC TCCCATTCGACACTACAGCCCGGAACAGCAGAAGATGATTCAGGCTGAGG TGGCGAAACTCCTGAAGAATGGATCCATTCGGGAATCAACTTCTGAGTGG GCCGCCAACTGTTCGACGGTTCGCAAGAAAGACGGAACAATGCGGGTTGT GCAAGATTTTCGAGGTCTCAATGCGCTTCTCGAGTCACAGAGTGGTAGGC TCGGGGACTTGGAGCACATTATGGATGAGATGGAAGGGTCGAAGTGTTTC CCCAACATCGGTCTGGCTTCGGGATTCTTACCACTCGAGATCTACGAGGA CGATTGACACCTGACGGCGTTTCGAGACACTGACGGGAAGCTGTACGAGT ACAACTTCGGGTTGAAGACAGTGCCATCCGCGTTTGCCCACTACATGGGA GGGCGACTGATACCAGTCAAGGATAAGGGAATAAGAACTGGTTGGACGAC ATCGCCATCCCGTTGAAAACCATTGAAGATCAGTGGGGGCTGCTTCGAGG AACGCTCGAGTGTCTACGGCAAGGACGTCTAACCGTCAATCTCCAGAAAT CGCATTTCCGTCAGTCGGTCATGGAATTCGTCGGCATCATCGTGGGCCGG CTTGGTACCAGACCAGCCCCGAGCAAGATAGATGCTATCACGCAGCTGTC GAGACCGAACACGGTGGAGGAAGTGCGAGTGCTTAAACGCCAATTCGTAC CCCATTATAGCACAGTGGCGGCGCCCATCTCCGACTTGGTGAGAGTCCCA AGGTTCAGGACCAAGAGAGCGAAGAAAGAGTCTGTCCCGTGGGGACAAGA GCAGAACAAGGATTTTAATACGCTCATCGAGGCTTTGGCGTCTCCTCCAA TTCTAGCCGTGCCGGTGTGGACAGAGCCGTTCTTACTGTACACCAACGCC AGTGAGGTGGGAGCATGAGCGGTGTTCACGCAATGTATCGACGGAGTGGA GAAGGTGAACGCGTGCGGCAGCAAAAGGTGGTCGAGAGGGGACTCCTTGC GGTCTGCAACATACCGTATGTGCATGGCAGCCATGTGGGCGGTGAACAAG TTCCAACCCCATCTTTCGGGGCGGACGTTCACCCTCATCACGGACTGTTG CCTCTGCACAAGCCAAACCTTCTCACCGAAGTACCACCGCTGGACTCTAA GGTTGATGGAGTACGACATGACCTTGAAGTGGAGGCCGGGGACACAACAT CAGCTCCCAGACGCCATGTCGCGGTTACCGAGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig839:16250..17532+

>mRNA_S-dermatodea_contig839.16562.1 ID=mRNA_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig839:16250..17532+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCGACTGGAGCTCAAGGACCCCAACGTCAAGCCGTATGTGGCTCCCAT
TCGACACTACAGCCCGGAACAGCAGAAGATGATTCAGGCTGAGGTGGCGA
AACTCCTGAAGAATGGATCCATTCGGGAATCAACTTCTGAGTGGGCCGCC
AACTGTTCGACGGTTCGCAAGAAAGACGGAACAATGCGGGTTGTGCAAGA
TTTTCGAGGTCTCAATGCGCTTCTCGAGTCACAGAGTGGTAGGCTCGGGG
ACTTGGAGCACATTATGGATGAGATGGAAGGGTCGAAGTGTTTCCCCAAC
ATCGGTCTGGCTTCGGGATTCTTACCACTCGAGATCTACGAGGACGATTG
AATGCGACTGGAGCTCAAGGACCCCAACGTCAAGCCGTATGTGGCTCCCA
TTCGACACTACAGCCCGGAACAGCAGAAGATGATTCAGGCTGAGGTGGCG
AAACTCCTGAAGAATGGATCCATTCGGGAATCAACTTCTGAGTGGGCCGC
CAACTGTTCGACGGTTCGCAAGAAAGACGGAACAATGCGGGTTGTGCAAG
ATTTTCGAGGTCTCAATGCGCTTCTCGAGTCACAGAGTGGTAGGCTCGGG
GACTTGGAGCACATTATGGATGAGATGGAAGGGTCGAAGTGTTTCCCCAA
CATCGGTCTGGCTTCGGGATTCTTACCACTCGAGATCTACGAGGACGATT
GA
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