mRNA_S-dermatodea_contig839.16562.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5JF70_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF70_9PHAE) HSP 1 Score: 228 bits (582), Expect = 6.580e-65 Identity = 122/279 (43.73%), Postives = 172/279 (61.65%), Query Frame = 3
Query: 471 G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
G G + WLDDIA+ KT+E+ + LL L L+Q T + KS F +EF+G++VGR GTRPAPSK+ A+ ++ P+TV E+R R FVP++S +AAP+SD++R F +KRA+ + V G Q + + L+E L + P+L +P W EPF L+T+AS + A +V TQ ++ E SKR SR + S+ R + ++A+ F+ +L R FTLITDC L TSQ S K HRW L++M YDM LKWR GT H +PDA+SRL
Sbjct: 236 GKGLEKWLDDIALHTKTLEEHFVLLEKVLTILKQKGYTGHFVKSEFLLPELEFLGVMVGRDGTRPAPSKVKAVQEMELPSTVGELRSFLGLANYLRGFVPNFSAIAAPLSDILRNKEFSSKRARNKRVVMGPPQIEAYMKLVEKLTTYPVLVLPNWLEPFTLHTDASLIAAGSVLTQQVENREAPVGYASKRLSRSEEKLSSNDREVLGVLYALEHFKVYLQHRQFTLITDCAALMWLFTSQKLSSKMHRWALKMMAYDMVLKWRKGTDHVVPDALSRL 514
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5LHQ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHQ7_9PHAE) HSP 1 Score: 228 bits (580), Expect = 1.770e-62 Identity = 121/277 (43.68%), Postives = 167/277 (60.29%), Query Frame = 3
Query: 477 GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
G + WLDDI + T+E+ L+ + L+ +V+ +KS F S +EF+G +VGR G RPAPSKI A+ +L P TV EVR R FVP +ST+ API+DL+R F +KRA+ VPWG Q + F +I+AL + P+LA P W PF L+T+ASE+ A AV TQ ++ E S R++R + SA R + ++ + +F +L R FTL+TDC L TSQ S K HRW+LRLM++D+ LKWR G H PDA+SRL
Sbjct: 270 GVERWLDDILLHSATLEEHMALIEEVFDLLQGVGYSVHFKKSMFCMSEVEFLGAMVGRSGVRPAPSKIRAVQELEMPATVGEVRAFLGLAGYLRGFVPDFSTLTAPITDLLRDKAFSSKRARNRRVPWGAAQIEAFQAVIKALVTHPVLAAPDWHLPFTLHTDASELAAGAVLTQPVENREAPLGYASHRFTRAEEKLSANDREVLGVLYGIEQFHTYLQHRRFTLVTDCAALTWLFTSQNLSSKMHRWSLRLMQFDIDLKWRKGEDHTAPDALSRL 546
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KBF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBF4_9PHAE) HSP 1 Score: 227 bits (579), Expect = 3.450e-62 Identity = 120/269 (44.61%), Postives = 163/269 (60.59%), Query Frame = 3
Query: 486 NWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLKRQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCCLCT----SQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
+WLDDI + +T E+ L L LR L+VN K F S EF+G+I+ G PAPSK++AI + RP TVE++R L VAAP++D++R F +KRA+K + WGQ + F+ L + LASP +LA P PF L+++AS VGA A Q IDG ++ A S ++SR D+ R T R CM +W V+ F+P+L+GR F ++TDC T S+ PK HRW LRLMEYD+ L+WR G H LPDA+SRLP
Sbjct: 468 SWLDDILVANETWEEHLAALVLVLTRLRAAGLSVNFPKCIFGASSQEFLGMIIDATGMHPAPSKLEAIANMPRPQTVEDLRTL----------VAAPLTDILRNKDFASKRARKLPIQWGQAEEHAFHHLRQCLASPTVLAFPDPNAPFELHSDASSVGAGATLLQTIDGTPRIIAFASHKFSRTDARRGPTERECMGVLWGVDHFKPYLAGRQFKVVTDCSALTWLFRSRELCPKLHRWALRLMEYDIGLEWRAGVHHVLPDALSRLP 726
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KHG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG6_9PHAE) HSP 1 Score: 223 bits (569), Expect = 1.150e-60 Identity = 115/278 (41.37%), Postives = 172/278 (61.87%), Query Frame = 3
Query: 477 GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCCLCT----SQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
G + WLDDI I +T+E+ + L+ L++ +V+ KS F +EF+G++VGR G RP PSKI AIT++ +P TV +R R FV +S + AP++D++R F TKRA+ ++PWG+EQ+ + +I AL SPP+L P W PF L+T+ASE A AV TQ ++ + GS RW++ ++ R+ T R AA++ + F+ +L + FTL+TDC T SQ S +R+ LR+ME+ MTL+WR GT+H +PDA+SRLP
Sbjct: 964 GIERWLDDILIHSETLEEHLKKIDEVLKLLQEAGFSVHFDKSLFCMQEVEFLGVMVGRSGVRPPPSKIKAITEMEKPTTVGGLRSFVGMANFLRDFVKDFSAIVAPLTDILRNKDFSTKRARNLAIPWGEEQDAAHDAIIRALVSPPVLLPPDWELPFTLHTDASERAAGAVLTQVVEDHDTAIGFGSHRWTQSEAKRAPTDREVRAALFGLEHFRIYLLHQPFTLVTDCSAITWLFQSQHLSSTMYRYALRMMEFTMTLQWRKGTEHTIPDALSRLP 1241
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5KW13_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW13_9PHAE) HSP 1 Score: 204 bits (519), Expect = 5.490e-54 Identity = 117/280 (41.79%), Postives = 164/280 (58.57%), Query Frame = 3
Query: 471 G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQK-SHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
G G + WLDD+ + T E+ L+R ++ L T N QK S F S +EF+G++VGR G RPAPSKI+A+ +L+ P V EVR R FVP++S + AP+S+L+R P F +K+A+ + VPWG EQ + F +IE L + P+L +P W++PF ++T+AS + AV TQ +DG R+AT + + AV F+ +L R T+ITDC L TSQ S K HRW L+LM YDM LKWR GT++ PDA+S L
Sbjct: 1066 GKGVEKWLDDMGLHSATFEEHLELVRTVVKILIARGYTGNFQKKSEFFLSEIEFLGVMVGRDGVRPAPSKINAVQELAIPTNVGEVRSFLGLAGSLRGFVPNFSAITAPVSNLLRNPAFSSKKARLKKVPWGSEQAEAFLKIIELLTTHPVLILPDWSQPFTVHTDASTLATGAVLTQEVDG------------------RAATDPEVLGVLHAVEHFEIYLQHRQLTVITDCSALLWLFTSQHLSSKMHRWALKLMAYDMVLKWRRGTENVGPDALSHL 1327
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A6H5K3V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3V4_9PHAE) HSP 1 Score: 184 bits (468), Expect = 2.880e-47 Identity = 113/281 (40.21%), Postives = 156/281 (55.52%), Query Frame = 3
Query: 399 VQLRVEDSAIRVCPLHGRAT---DTSQ--G*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACG--SKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHR 1190
+Q V I P AT D + G G +NWLDDI + T E+ L+R ++ L T N QKS F S +EF+G+++GR G RPAPSKI A+ +L+ P V EVR R FVP++S + AP+S+++R P F +K+A+ + VPWG EQ +DF +IE L + IL +P W++PF ++ +AS + AV TQ +DG + G SKR SR SA R + + V F+ +L R FTLITDC L TSQ S K HR
Sbjct: 840 LQWNVSSFGITTIPAFFSATLGDDLREEIGKGVENWLDDIGLHSATFEEHLELVRRVVKILIARGYTGNFQKSEFFLSEIEFLGVMLGRDGVRPAPSKIKAVQELAIPTNVGEVRSFLGLAGYLRGFVPNFSAIRAPVSNILRNPAFSSKKARLKKVPWGSEQTEDFLKIIELLTTHSILILPDWSQPFTVHADASNLATGAVLTQEVDGGARHRPVGYHSKRLSRAQQNASANDREFLGVLHVVEHFEIYLQHRQFTLITDCSALLWLFTSQHLSSKMHR 1120
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A224XDN8_9HEMI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Panstrongylus lignarius TaxID=156445 RepID=A0A224XDN8_9HEMI) HSP 1 Score: 164 bits (415), Expect = 2.130e-40 Identity = 94/272 (34.56%), Postives = 147/272 (54.04%), Query Frame = 3
Query: 489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITD--CCLCTSQTFSP--KYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSR 1274
+LDDI + + +D L L LR L+VN +K+ +S + ++G +V R G PSK++AI +P TV ++R R+FVPH+ST+++P++DL+R K + W Q+K F L E L + P+L P + PFLL T+AS+ G A+ +Q ++ EK A S+ +R + S T C+A +WAV KF+P+L G FT+ITD L P + RW +++ +Y + RPG Q++ DA+SR
Sbjct: 379 YLDDIVVITQDFQDHLHTLEQVLTRLRNAGLSVNWEKAQICRSELAYLGYVVDRDGLHVDPSKVEAILNFPQPRTVRQLRRFLGLASWYRRFVPHFSTISSPLTDLLR---------KNKKWHWTDNQDKAFKELKEVLVTAPVLTCPDFNHPFLLQTDASQSGLGAILSQNLEEGEKPIAFASRSLTRNEKNFSTTELECLAVLWAVEKFRPYLEGIEFTVITDHRALLWLKSLKDPQGRLARWAMKIQQYQFNIIHRPGKQNEAADALSR 641
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A023EXS9_TRIIF (RNA-directed DNA polymerase (Fragment) n=1 Tax=Triatoma infestans TaxID=30076 RepID=A0A023EXS9_TRIIF) HSP 1 Score: 163 bits (412), Expect = 5.300e-40 Identity = 90/273 (32.97%), Postives = 147/273 (53.85%), Query Frame = 3
Query: 489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITD----CCLCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRL 1277
+LDDI + + ++ L L LTVN +K+ +S + ++G +V + G P+K+ AI +P TV ++R R+FVPH+S+V AP+++L++ K + WG+ Q + F L E L + P+L P ++ PF+L T+AS G A+ +Q D EK A S+ +R + S T + C+A MWA+ KF+P+L G FT+ITD L + + RW +++ +Y ++K RPGTQ+ DA+SR+
Sbjct: 384 YLDDIIVVTRDFKEHLETLEKVFSRLHNAGLTVNWEKTRVCRSELPYLGYVVDQQGLHVDPNKVSAILNFPQPKTVRQLRRFLGLASWYRRFVPHFSSVCAPLTELLK---------KHKKWKWGESQEQGFKDLKEILVAAPVLTCPDFSRPFILQTDASSSGLGAILSQEFDEGEKPIAFASRSLTRNEKNFSTTEQECLAVMWAIEKFRPYLEGADFTVITDHRALVWLKNLKDPQGRLARWAIKMQQYQFSIKHRPGTQNAAADALSRV 647
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A3B1IDL1_ASTMX (Ribonuclease H n=1 Tax=Astyanax mexicanus TaxID=7994 RepID=A0A3B1IDL1_ASTMX) HSP 1 Score: 160 bits (405), Expect = 4.680e-39 Identity = 100/301 (33.22%), Postives = 156/301 (51.83%), Query Frame = 3
Query: 408 RVEDSAIRVCPLHGRATDTSQG*GNKNWLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDCC----LCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
R+ D +R C A +LDD+ + + + L L+ L + LT N K H S +++G +GR RP SK AI RP T +VR R+FVP++S++A P++D+ TK+ + E V W + K F L EAL S P+L P +++PF+++T+ASE+G AV +Q +DG+E SK+ + + +A R +A WA+N+ + +L GR FTL+TD L ++ + K RW L L +++ +L RPG+ H DA+SRLP
Sbjct: 904 RLMDVVLRPCRAFAAA-----------YLDDVVVHSTSWAEHLVHLSKVLDALLEAGLTANPAKCHLGLSEAQYLGYSIGRGILRPQESKTAAIKDCPRPTTKTQVRAFLGLAGYYRRFVPNFSSIAVPLTDM-------TKKRQPEEVQWSTDAEKAFTQLKEALTSAPVLRNPDFSQPFIVHTDASEIGLGAVLSQEVDGMEHPILFLSKKLNPTERRYAAIEREALAIKWALNELRFYLLGRPFTLVTDHAPLQWLANAKDTNAKITRWFLSLQDFNFSLLHRPGSLHGNADALSRLP 1186
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Match: A0A146KR86_LYGHE (RNA-directed DNA polymerase (Fragment) n=4 Tax=Lygus hesperus TaxID=30085 RepID=A0A146KR86_LYGHE) HSP 1 Score: 160 bits (404), Expect = 6.410e-39 Identity = 98/274 (35.77%), Postives = 151/274 (55.11%), Query Frame = 3
Query: 489 WLDDIAIPLKTIEDQWGLLRGTLECLRQGRLTVNLQKSHFRQSVMEFVGIIVGRLGTRPAPSKIDAITQLSRPNTVEEVRVLK------RQFVPHYSTVAAPISDLVRVPRFRTKRAKKESVPWGQEQNKDFNTLIEALASPPILAVPVWTEPFLLYTNASEVGA*AVFTQCIDGVEKVNACGSKRWSRGDSLRSATYRMCMAAMWAVNKFQPHLSGRTFTLITDC----CLCTSQTFSPKYHRWTLRLMEYDMTLKWRPGTQHQLPDAMSRLP 1280
+LDD+ + +T E+ LL ++ L + LTVNL+K +S + F+G +V G R + K+ AI + R + EVR R+FVP++S VA+P+SDL+ K+ KK S W + K F L L S P+L+VP + PF++ T+AS G AV +Q EKV A S++ S + S C+ +WAV +F+P++ G +FT+ITD L + + SP+ RW LRL YD +++R G +++PDA+SR P
Sbjct: 592 YLDDLVMVSQTWEEHASLLNQVIDRLERANLTVNLEKCELFRSSLTFLGYVVDEQGLRASEQKVKAIVEFPRMQSQREVRRFLGICNYYRRFVPNFSKVASPLSDLL-------KKGKKFS--WSLDCEKAFAELKTLLTSAPVLSVPDFDLPFVIQTDASLDGLGAVISQKFPDGEKVIAYASRKLSNAERKWSVIELECLGILWAVERFRPYVEGTSFTVITDHHSLKWLNSLKDPSPRLTRWALRLQAYDFKIEYRKGGLNKVPDALSRAP 856 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig839.16562.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig839.16562.1 >prot_S-dermatodea_contig839.16562.1 ID=prot_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=117bp MRLELKDPNVKPYVAPIRHYSPEQQKMIQAEVAKLLKNGSIRESTSEWAAback to top mRNA from alignment at S-dermatodea_contig839:16250..17532+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig839.16562.1 ID=mRNA_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1283bp|location=Sequence derived from alignment at S-dermatodea_contig839:16250..17532+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig839:16250..17532+ >mRNA_S-dermatodea_contig839.16562.1 ID=mRNA_S-dermatodea_contig839.16562.1|Name=mRNA_S-dermatodea_contig839.16562.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at S-dermatodea_contig839:16250..17532+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |