prot_S-dermatodea_contig83760.16548.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig83760.16548.1
Unique Nameprot_S-dermatodea_contig83760.16548.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length50
Homology
BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Match: A0A6H5JLA9_9PHAE (HeH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNA 47
            DW +LS   V +KTVAA+KEFLDEEG+ YP+K KKA+LV +V N  A
Sbjct:  916 DWGALSAKAVGRKTVAALKEFLDEEGIDYPSKIKKAELVDMVLNMLA 962          
BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Match: D7FLN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 0
Query:    1 DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNA 47
            DW +LS   V +KTVAA+KEFLDEEG+ YP+K KKA+LV +V N  A
Sbjct:  565 DWGALSAKAVGRKTVAALKEFLDEEGMDYPSKIKKAELVDMVLNMLA 611          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLA9_9PHAE1.170e-961.70HeH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLN9_ECTSI2.180e-961.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025856HeH/LEM domainPFAMPF12949HeHcoord: 11..42
e-value: 5.4E-10
score: 38.8
IPR036269Rho termination factor, N-terminal domain superfamilySUPERFAMILY68912Rho N-terminal domain-likecoord: 16..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83760contigS-dermatodea_contig83760:49..198 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83760.16548.1mRNA_S-dermatodea_contig83760.16548.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig83760 49..198 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig83760.16548.1 ID=prot_S-dermatodea_contig83760.16548.1|Name=mRNA_S-dermatodea_contig83760.16548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNASS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR025856HeH/LEM_domain
IPR036269Rho_N_sf