mRNA_S-dermatodea_contig83760.16548.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83760.16548.1
Unique NamemRNA_S-dermatodea_contig83760.16548.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Match: A0A6H5JLA9_9PHAE (HeH domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLA9_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 1.170e-9
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNA 141
            DW +LS   V +KTVAA+KEFLDEEG+ YP+K KKA+LV +V N  A
Sbjct:  916 DWGALSAKAVGRKTVAALKEFLDEEGIDYPSKIKKAELVDMVLNMLA 962
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BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Match: D7FLN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN9_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 29/47 (61.70%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    1 DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNA 141
            DW +LS   V +KTVAA+KEFLDEEG+ YP+K KKA+LV +V N  A
Sbjct:  565 DWGALSAKAVGRKTVAALKEFLDEEGMDYPSKIKKAELVDMVLNMLA 611
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83760.16548.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLA9_9PHAE1.170e-961.70HeH domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLN9_ECTSI2.180e-961.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83760contigS-dermatodea_contig83760:49..198 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-17_000410.1
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925338.7201426-CDS-S-dermatodea_contig83760:48..1981622925338.7201426-CDS-S-dermatodea_contig83760:48..198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83760 49..198 -
1694079865.798271-CDS-S-dermatodea_contig83760:48..1981694079865.798271-CDS-S-dermatodea_contig83760:48..198Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83760 49..198 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83760.16548.1prot_S-dermatodea_contig83760.16548.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83760 49..198 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83760.16548.1

>prot_S-dermatodea_contig83760.16548.1 ID=prot_S-dermatodea_contig83760.16548.1|Name=mRNA_S-dermatodea_contig83760.16548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=50bp
DWRSLSEAGVKKKTVAAIKEFLDEEGVGYPAKAKKADLVAIVCNFNASS*
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mRNA from alignment at S-dermatodea_contig83760:49..198-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83760.16548.1 ID=mRNA_S-dermatodea_contig83760.16548.1|Name=mRNA_S-dermatodea_contig83760.16548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=150bp|location=Sequence derived from alignment at S-dermatodea_contig83760:49..198- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTGGAGGTCCCTCTCGGAGGCCGGTGTTAAAAAGAAGACCGTGGCCGC
GATCAAGGAGTTCTTGGATGAGGAGGGGGTGGGCTACCCGGCGAAGGCGA
AGAAGGCGGATCTCGTCGCGATTGTCTGTAATTTCAACGCCTCGTCGTAA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83760:49..198-

>mRNA_S-dermatodea_contig83760.16548.1 ID=mRNA_S-dermatodea_contig83760.16548.1|Name=mRNA_S-dermatodea_contig83760.16548.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig83760:49..198- (Saccorhiza dermatodea SderLu1190fm monoicous)
GATTGGAGGTCCCTCTCGGAGGCCGGTGTTAAAAAGAAGACCGTGGCCGC
GATCAAGGAGTTCTTGGATGAGGAGGGGGTGGGCTACCCGGCGAAGGCGA
AGAAGGCGGATCTCGTCGCGATTGTCTGTAATTTCAACGCCTCGTCGTAA
GATTGGAGGTCCCTCTCGGAGGCCGGTGTTAAAAAGAAGACCGTGGCCGC
GATCAAGGAGTTCTTGGATGAGGAGGGGGTGGGCTACCCGGCGAAGGCGA
AGAAGGCGGATCTCGTCGCGATTGTCTGTAATTTCAACGCCTCGTCGTAA
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