mRNA_S-dermatodea_contig83203.16506.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig83203.16506.1
Unique NamemRNA_S-dermatodea_contig83203.16506.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 6.830e-165
Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 729
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFL FLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRM LKGANNYFSNFNEVV AYEQKQLQLHS++WVRLPN+I LDTP
Sbjct:  306 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVVIAYEQKQLQLHSSVWVRLPNNITLDTP 548          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 447 bits (1150), Expect = 7.800e-153
Identity = 219/242 (90.50%), Postives = 232/242 (95.87%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 726
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL F+I+KLL QGL++SIK+AKKIIYSN+SFIWYLTEE L+KHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NRM LKG+NNYFSNFNEV+ AYEQKQLQLHS+IWVR P  I LDT
Sbjct:  313 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVITAYEQKQLQLHSSIWVRCPKDITLDT 554          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 4.720e-149
Identity = 215/241 (89.21%), Postives = 229/241 (95.02%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 723
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL FLI+KLL Q L++SIKRAKKIIYSNR FIW+LTEE L+KHPIILNRAPTLHRLGVQAFDP+LVRGRAIQLHPLVC AFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NRM LKGANNYFS+FNEV++AYEQKQLQ+HS+IWVR P  I LD
Sbjct:  313 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVISAYEQKQLQVHSSIWVRCPTDITLD 553          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 2.430e-148
Identity = 211/243 (86.83%), Postives = 229/243 (94.24%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 729
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL F+I++LL QGL++SIKRAKKIIY N  FIWYLTEE LKKHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQP+QDMVLGFYYLT  NR +L+G+NNYF+NFNEV++AY+QKQLQLHSAIWVR PN INLD P
Sbjct:  317 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVISAYKQKQLQLHSAIWVRCPNDINLDNP 559          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 426 bits (1095), Expect = 1.730e-144
Identity = 208/237 (87.76%), Postives = 224/237 (94.51%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNS 711
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L LNQCGLPYEMAIELFL F+I++LL QGL +SIK+AKKIIYSN+SFIWYLT+E L KHPIILNRAPTLHRLGVQAFDP+LV GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NR+ LKG NNYFSNF+EV++AY+QKQLQ+HS IWVR  NS
Sbjct:  313 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVLSAYQQKQLQIHSTIWVRCFNS 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 4.160e-144
Identity = 206/243 (84.77%), Postives = 228/243 (93.83%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 729
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFL F+I++LL QGL++SIKRAKKIIYSN  FIWYLTEE L+KHPIILNRAPTLHRLGVQAFDPVLVRGR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQP+QDMVLGFYYLT  NR +L G+NNYFS+FNEV++AY+QKQ+Q+HS+IWVR PN INLD+P
Sbjct:  317 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVISAYQQKQVQIHSSIWVRCPNEINLDSP 559          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 3.610e-143
Identity = 205/242 (84.71%), Postives = 228/242 (94.21%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 726
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+LQLNQCGLPYEMAIELFL F+I+KLL QGL +SIK+AKKII+SN+ FIWYLT+E L KHPIILNRAPTLHRLGVQAFDPVLV+GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSP+TGEPNIQP+QDM+LGFYYLT +NR+ LKGANNYFS+F+EV++AY+ KQL++HS IWVR  N + LD+
Sbjct:  313 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVLSAYQHKQLKVHSPIWVRCSNELLLDS 554          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 9.270e-140
Identity = 204/242 (84.30%), Postives = 222/242 (91.74%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 726
            ++RPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGPQL LNQCGLPYEMAIELFL F+IHKLLFQGL  SIK+AKKII+SN SFIW+L +E L +HPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLSP+TGE NI P+QDMVLGFYYLT  NRM LKGANNYFSNFNEV++AY+QKQL +HS+IWVR  ++I+L T
Sbjct:  308 HKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVISAYQQKQLHVHSSIWVRCSDNIDLYT 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 4.380e-138
Identity = 199/241 (82.57%), Postives = 218/241 (90.46%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 723
            ++RPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL LNQCGLPYEMA+ELFL FLIHK+ F  LA SIK AKKIIYSN+SFIWYL +E L KHPIILNRAPTLHRLGVQAFDPVLV GRAIQLHPLVCPAFNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLSP+TGEPNI P+QDMVLGFYYLT  NR+ LKG NNYFS FNEV++AY+QK+L LHS+IWVR P ++ L+
Sbjct:  309 HKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVISAYQQKKLHLHSSIWVRCPKTVKLE 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.050e-137
Identity = 197/241 (81.74%), Postives = 221/241 (91.70%), Query Frame = 1
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 723
            ++RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL FL+HKL++QGLANSI +AKKIIY+N+SFIW L +E L +HP+ILNRAPTLHRLGVQAFD +LV GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLSP+TG+P IQPTQDMVLGFYYLTA N  +LKG+N+YF +F EV+ AY QKQL +HS+IWVR P +I LD
Sbjct:  315 HKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVILAYSQKQLHIHSSIWVRCPVNIELD 555          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZT2_9PHAE6.830e-16597.12DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A0R6MFT6_UNDPI7.800e-15390.50DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE4.720e-14989.21DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A6B7EVT1_9PHAE2.430e-14886.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1GJH3_FUCVE1.730e-14487.76DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
D1J788_ECTSI4.160e-14484.77DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A141BSD2_9PHAE3.610e-14384.71DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
A0A8F0JYE1_9PHAE9.270e-14084.30DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE4.380e-13882.57DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A8E6D698_9PHAE1.050e-13781.74DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83203contigS-dermatodea_contig83203:3..731 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score426.8
Seed ortholog evalue6.8e-117
Seed eggNOG ortholog2880.D1J788
KEGG rclassRC02795
KEGG koko:K03046
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,map00230,map00240,map01100,map03020
KEGG ModuleM00183
GOsGO:0000428,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005736,GO:0005737,GO:0009507,GO:0009536,GO:0030880,GO:0031974,GO:0031981,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0055029,GO:0061695,GO:0070013,GO:1902494,GO:1990234
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGs2QPYA@2759,COG0086@1
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size729
Cds size729
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925335.626619-CDS-S-dermatodea_contig83203:2..7311622925335.626619-CDS-S-dermatodea_contig83203:2..731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83203 3..731 +
1694079863.59417-CDS-S-dermatodea_contig83203:2..7311694079863.59417-CDS-S-dermatodea_contig83203:2..731Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig83203 3..731 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83203.16506.1prot_S-dermatodea_contig83203.16506.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig83203 3..731 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig83203.16506.1

>prot_S-dermatodea_contig83203.16506.1 ID=prot_S-dermatodea_contig83203.16506.1|Name=mRNA_S-dermatodea_contig83203.16506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=243bp
NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLP
YEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKH
PIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVH
IPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRM
HLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP
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mRNA from alignment at S-dermatodea_contig83203:3..731+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig83203.16506.1 ID=mRNA_S-dermatodea_contig83203.16506.1|Name=mRNA_S-dermatodea_contig83203.16506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=729bp|location=Sequence derived from alignment at S-dermatodea_contig83203:3..731+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAGAAGACCATTAAAATCATTAGCTGATATTATTGAAGGGAAACAAGG GCGATTCCGACAAAATTTATTGGGTAAACGAGTAGATTATTCAGGTCGTT CTGTTATTATTGTAGGCCCACAACTTCAGTTAAATCAATGTGGTTTACCT TATGAAATGGCAATCGAATTATTTTTAACATTTCTAATACATAAATTACT TTTTCAAGGTTTAGCTAATTCTATAAAAAGAGCTAAAAAAATTATTTATA GTAATAGATCTTTTATTTGGTATTTAACTGAAGAAACATTAAAAAAACAC CCAATTATTTTAAACCGTGCTCCTACTTTACATCGCTTAGGGGTACAAGC TTTTGATCCAGTACTTGTTAGAGGCAGAGCAATTCAATTGCATCCACTTG TTTGTCCAGCTTTTAATGCGGATTTTGATGGTGACCAAATGGCAGTTCAT ATTCCATTATCTTTTGAATCTCAACTAGAAACAAGGTTGTGTCTTTTAGC TCCTAATAATTTTTTGTCTCCCTCTACTGGGGAACCAAATATTCAACCAA CACAGGATATGGTTTTAGGGTTTTATTACTTAACTGCAAACAATAGAATG CATTTAAAGGGAGCAAATAATTATTTTTCTAATTTTAATGAAGTAGTGGC AGCTTATGAACAAAAACAATTACAACTTCATTCAGCCATTTGGGTTCGAT TACCTAATAGTATTAACTTAGATACACCA
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Coding sequence (CDS) from alignment at S-dermatodea_contig83203:3..731+

>mRNA_S-dermatodea_contig83203.16506.1 ID=mRNA_S-dermatodea_contig83203.16506.1|Name=mRNA_S-dermatodea_contig83203.16506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1458bp|location=Sequence derived from alignment at S-dermatodea_contig83203:3..731+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AATAGAAGACCATTAAAATCATTAGCTGATATTATTGAAGGGAAACAAGG
GCGATTCCGACAAAATTTATTGGGTAAACGAGTAGATTATTCAGGTCGTT
CTGTTATTATTGTAGGCCCACAACTTCAGTTAAATCAATGTGGTTTACCT
TATGAAATGGCAATCGAATTATTTTTAACATTTCTAATACATAAATTACT
TTTTCAAGGTTTAGCTAATTCTATAAAAAGAGCTAAAAAAATTATTTATA
GTAATAGATCTTTTATTTGGTATTTAACTGAAGAAACATTAAAAAAACAC
CCAATTATTTTAAACCGTGCTCCTACTTTACATCGCTTAGGGGTACAAGC
TTTTGATCCAGTACTTGTTAGAGGCAGAGCAATTCAATTGCATCCACTTG
TTTGTCCAGCTTTTAATGCGGATTTTGATGGTGACCAAATGGCAGTTCAT
ATTCCATTATCTTTTGAATCTCAACTAGAAACAAGGTTGTGTCTTTTAGC
TCCTAATAATTTTTTGTCTCCCTCTACTGGGGAACCAAATATTCAACCAA
CACAGGATATGGTTTTAGGGTTTTATTACTTAACTGCAAACAATAGAATG
CATTTAAAGGGAGCAAATAATTATTTTTCTAATTTTAATGAAGTAGTGGC
AGCTTATGAACAAAAACAATTACAACTTCATTCAGCCATTTGGGTTCGAT
TACCTAATAGTATTAACTTAGATACACCAAATAGAAGACCATTAAAATCA
TTAGCTGATATTATTGAAGGGAAACAAGGGCGATTCCGACAAAATTTATT
GGGTAAACGAGTAGATTATTCAGGTCGTTCTGTTATTATTGTAGGCCCAC
AACTTCAGTTAAATCAATGTGGTTTACCTTATGAAATGGCAATCGAATTA
TTTTTAACATTTCTAATACATAAATTACTTTTTCAAGGTTTAGCTAATTC
TATAAAAAGAGCTAAAAAAATTATTTATAGTAATAGATCTTTTATTTGGT
ATTTAACTGAAGAAACATTAAAAAAACACCCAATTATTTTAAACCGTGCT
CCTACTTTACATCGCTTAGGGGTACAAGCTTTTGATCCAGTACTTGTTAG
AGGCAGAGCAATTCAATTGCATCCACTTGTTTGTCCAGCTTTTAATGCGG
ATTTTGATGGTGACCAAATGGCAGTTCATATTCCATTATCTTTTGAATCT
CAACTAGAAACAAGGTTGTGTCTTTTAGCTCCTAATAATTTTTTGTCTCC
CTCTACTGGGGAACCAAATATTCAACCAACACAGGATATGGTTTTAGGGT
TTTATTACTTAACTGCAAACAATAGAATGCATTTAAAGGGAGCAAATAAT
TATTTTTCTAATTTTAATGAAGTAGTGGCAGCTTATGAACAAAAACAATT
ACAACTTCATTCAGCCATTTGGGTTCGATTACCTAATAGTATTAACTTAG
ATACACCA
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