prot_S-dermatodea_contig83203.16506.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig83203.16506.1
Unique Nameprot_S-dermatodea_contig83203.16506.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length243
Homology
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0JZT2_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0JZT2_9PHAE)

HSP 1 Score: 478 bits (1229), Expect = 6.830e-165
Identity = 236/243 (97.12%), Postives = 239/243 (98.35%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 243
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFL FLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRM LKGANNYFSNFNEVV AYEQKQLQLHS++WVRLPN+I LDTP
Sbjct:  306 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLPFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMQLKGANNYFSNFNEVVIAYEQKQLQLHSSVWVRLPNNITLDTP 548          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A0R6MFT6_UNDPI (DNA-directed RNA polymerase subunit beta' n=25 Tax=Laminariales TaxID=2886 RepID=A0A0R6MFT6_UNDPI)

HSP 1 Score: 447 bits (1150), Expect = 7.800e-153
Identity = 219/242 (90.50%), Postives = 232/242 (95.87%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 242
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL F+I+KLL QGL++SIK+AKKIIYSN+SFIWYLTEE L+KHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NRM LKG+NNYFSNFNEV+ AYEQKQLQLHS+IWVR P  I LDT
Sbjct:  313 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFIIYKLLSQGLSHSIKKAKKIIYSNQSFIWYLTEEILRKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMGLKGSNNYFSNFNEVITAYEQKQLQLHSSIWVRCPKDITLDT 554          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0F9J3_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Chorda asiatica TaxID=1281577 RepID=A0A8F0F9J3_9PHAE)

HSP 1 Score: 437 bits (1125), Expect = 4.720e-149
Identity = 215/241 (89.21%), Postives = 229/241 (95.02%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 241
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL FLI+KLL Q L++SIKRAKKIIYSNR FIW+LTEE L+KHPIILNRAPTLHRLGVQAFDP+LVRGRAIQLHPLVC AFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NRM LKGANNYFS+FNEV++AYEQKQLQ+HS+IWVR P  I LD
Sbjct:  313 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLIYKLLSQELSHSIKRAKKIIYSNRPFIWHLTEEILRKHPIILNRAPTLHRLGVQAFDPILVRGRAIQLHPLVCAAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRMQLKGANNYFSDFNEVISAYEQKQLQVHSSIWVRCPTDITLD 553          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A6B7EVT1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Cladosiphon okamuranus TaxID=309737 RepID=A0A6B7EVT1_9PHAE)

HSP 1 Score: 436 bits (1121), Expect = 2.430e-148
Identity = 211/243 (86.83%), Postives = 229/243 (94.24%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 243
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL F+I++LL QGL++SIKRAKKIIY N  FIWYLTEE LKKHPIILNRAPTLHRLGVQAFDPVL+RGRAIQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPS+GEP IQP+QDMVLGFYYLT  NR +L+G+NNYF+NFNEV++AY+QKQLQLHSAIWVR PN INLD P
Sbjct:  317 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYGNEPFIWYLTEEILKKHPIILNRAPTLHRLGVQAFDPVLIRGRAIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSSGEPTIQPSQDMVLGFYYLTTRNRKNLRGSNNYFANFNEVISAYKQKQLQLHSAIWVRCPNDINLDNP 559          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: D1GJH3_FUCVE (DNA-directed RNA polymerase subunit beta' n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJH3_FUCVE)

HSP 1 Score: 426 bits (1095), Expect = 1.730e-144
Identity = 208/237 (87.76%), Postives = 224/237 (94.51%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNS 237
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+L LNQCGLPYEMAIELFL F+I++LL QGL +SIK+AKKIIYSN+SFIWYLT+E L KHPIILNRAPTLHRLGVQAFDP+LV GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQP+QDMVLGFYYLTA NR+ LKG NNYFSNF+EV++AY+QKQLQ+HS IWVR  NS
Sbjct:  313 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPELHLNQCGLPYEMAIELFLPFIIYRLLSQGLCHSIKKAKKIIYSNQSFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPILVNGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPSQDMVLGFYYLTAQNRIGLKGTNNYFSNFHEVLSAYQQKQLQIHSTIWVRCFNS 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: D1J788_ECTSI (DNA-directed RNA polymerase subunit beta' n=8 Tax=Ectocarpales TaxID=2877 RepID=D1J788_ECTSI)

HSP 1 Score: 425 bits (1093), Expect = 4.160e-144
Identity = 206/243 (84.77%), Postives = 228/243 (93.83%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP 243
            N+RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP L+LNQCGLPYEMAIELFL F+I++LL QGL++SIKRAKKIIYSN  FIWYLTEE L+KHPIILNRAPTLHRLGVQAFDPVLVRGR+IQLHPLVC +FNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLS S+GEP IQP+QDMVLGFYYLT  NR +L G+NNYFS+FNEV++AY+QKQ+Q+HS+IWVR PN INLD+P
Sbjct:  317 NKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPHLKLNQCGLPYEMAIELFLPFIIYRLLSQGLSHSIKRAKKIIYSNEPFIWYLTEEILQKHPIILNRAPTLHRLGVQAFDPVLVRGRSIQLHPLVCSSFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSASSGEPTIQPSQDMVLGFYYLTTQNRTNLCGSNNYFSSFNEVISAYQQKQVQIHSSIWVRCPNEINLDSP 559          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A141BSD2_9PHAE (DNA-directed RNA polymerase subunit beta' n=14 Tax=Sargassaceae TaxID=3014 RepID=A0A141BSD2_9PHAE)

HSP 1 Score: 422 bits (1086), Expect = 3.610e-143
Identity = 205/242 (84.71%), Postives = 228/242 (94.21%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 242
            NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGP+LQLNQCGLPYEMAIELFL F+I+KLL QGL +SIK+AKKII+SN+ FIWYLT+E L KHPIILNRAPTLHRLGVQAFDPVLV+GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSP+TGEPNIQP+QDM+LGFYYLT +NR+ LKGANNYFS+F+EV++AY+ KQL++HS IWVR  N + LD+
Sbjct:  313 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPKLQLNQCGLPYEMAIELFLPFIIYKLLSQGLCHSIKKAKKIIHSNQPFIWYLTKEILSKHPIILNRAPTLHRLGVQAFDPVLVKGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPATGEPNIQPSQDMILGFYYLTTHNRLGLKGANNYFSSFHEVLSAYQHKQLKVHSPIWVRCSNELLLDS 554          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8F0JYE1_9PHAE (DNA-directed RNA polymerase subunit gamma n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0JYE1_9PHAE)

HSP 1 Score: 414 bits (1063), Expect = 9.270e-140
Identity = 204/242 (84.30%), Postives = 222/242 (91.74%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDT 242
            ++RPLKSLADIIEGKQGRFR NLLGKR DYSGRSVIIVGPQL LNQCGLPYEMAIELFL F+IHKLLFQGL  SIK+AKKII+SN SFIW+L +E L +HPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLA NNFLSP+TGE NI P+QDMVLGFYYLT  NRM LKGANNYFSNFNEV++AY+QKQL +HS+IWVR  ++I+L T
Sbjct:  308 HKRPLKSLADIIEGKQGRFRLNLLGKRTDYSGRSVIIVGPQLALNQCGLPYEMAIELFLPFIIHKLLFQGLVYSIKKAKKIIFSNDSFIWFLLKEILIQHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLATNNFLSPATGEANIHPSQDMVLGFYYLTTQNRMKLKGANNYFSNFNEVISAYQQKQLHVHSSIWVRCSDNIDLYT 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A2I4Q2A7_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A2I4Q2A7_9PHAE)

HSP 1 Score: 409 bits (1052), Expect = 4.380e-138
Identity = 199/241 (82.57%), Postives = 218/241 (90.46%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 241
            ++RPLKSLA++IEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL LNQCGLPYEMA+ELFL FLIHK+ F  LA SIK AKKIIYSN+SFIWYL +E L KHPIILNRAPTLHRLGVQAFDPVLV GRAIQLHPLVCPAFNADFDGDQMAVHIPLS ESQLETRLCLLA NNFLSP+TGEPNI P+QDMVLGFYYLT  NR+ LKG NNYFS FNEV++AY+QK+L LHS+IWVR P ++ L+
Sbjct:  309 HKRPLKSLAEMIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLHLNQCGLPYEMAVELFLPFLIHKIFFLKLAGSIKTAKKIIYSNKSFIWYLLKEILNKHPIILNRAPTLHRLGVQAFDPVLVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSLESQLETRLCLLATNNFLSPATGEPNILPSQDMVLGFYYLTTQNRIKLKGNNNYFSTFNEVISAYQQKKLHLHSSIWVRCPKTVKLE 549          
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Match: A0A8E6D698_9PHAE (DNA-directed RNA polymerase subunit beta' n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E6D698_9PHAE)

HSP 1 Score: 409 bits (1050), Expect = 1.050e-137
Identity = 197/241 (81.74%), Postives = 221/241 (91.70%), Query Frame = 0
Query:    1 NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLPYEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKHPIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRMHLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLD 241
            ++RPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQL+LNQCGLPYEMAIELFL FL+HKL++QGLANSI +AKKIIY+N+SFIW L +E L +HP+ILNRAPTLHRLGVQAFD +LV GRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQ+ETRLCLLAPNNFLSP+TG+P IQPTQDMVLGFYYLTA N  +LKG+N+YF +F EV+ AY QKQL +HS+IWVR P +I LD
Sbjct:  315 HKRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLELNQCGLPYEMAIELFLPFLMHKLIYQGLANSINKAKKIIYNNKSFIWGLLKEILGRHPVILNRAPTLHRLGVQAFDAILVTGRAIQLHPLVCPAFNADFDGDQMAVHIPLSFESQIETRLCLLAPNNFLSPATGDPVIQPTQDMVLGFYYLTAQNHTNLKGSNHYFGSFEEVILAYSQKQLHIHSSIWVRCPVNIELD 555          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig83203.16506.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0JZT2_9PHAE6.830e-16597.12DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A0R6MFT6_UNDPI7.800e-15390.50DNA-directed RNA polymerase subunit beta' n=25 Tax... [more]
A0A8F0F9J3_9PHAE4.720e-14989.21DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A6B7EVT1_9PHAE2.430e-14886.83DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
D1GJH3_FUCVE1.730e-14487.76DNA-directed RNA polymerase subunit beta' n=3 Tax=... [more]
D1J788_ECTSI4.160e-14484.77DNA-directed RNA polymerase subunit beta' n=8 Tax=... [more]
A0A141BSD2_9PHAE3.610e-14384.71DNA-directed RNA polymerase subunit beta' n=14 Tax... [more]
A0A8F0JYE1_9PHAE9.270e-14084.30DNA-directed RNA polymerase subunit gamma n=1 Tax=... [more]
A0A2I4Q2A7_9PHAE4.380e-13882.57DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]
A0A8E6D698_9PHAE1.050e-13781.74DNA-directed RNA polymerase subunit beta' n=1 Tax=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..195
e-value: 1.6E-71
score: 253.6
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 25..80
e-value: 1.2E-9
score: 38.7
coord: 90..162
e-value: 2.1E-22
score: 80.1
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100coord: 170..241
e-value: 4.7E-23
score: 84.3
NoneNo IPR availableGENE3D1.10.40.90coord: 51..99
e-value: 4.7E-45
score: 155.1
NoneNo IPR availableGENE3D2.40.40.20coord: 28..160
e-value: 4.7E-45
score: 155.1
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..230
NoneNo IPR availablePANTHERPTHR19376:SF32DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC1coord: 2..230
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 1..234
IPR007066RNA polymerase Rpb1, domain 3PFAMPF04983RNA_pol_Rpb1_3coord: 170..233
e-value: 1.6E-10
score: 41.1

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig83203contigS-dermatodea_contig83203:3..731 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig83203.16506.1mRNA_S-dermatodea_contig83203.16506.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig83203 3..731 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig83203.16506.1 ID=prot_S-dermatodea_contig83203.16506.1|Name=mRNA_S-dermatodea_contig83203.16506.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=243bp
NRRPLKSLADIIEGKQGRFRQNLLGKRVDYSGRSVIIVGPQLQLNQCGLP
YEMAIELFLTFLIHKLLFQGLANSIKRAKKIIYSNRSFIWYLTEETLKKH
PIILNRAPTLHRLGVQAFDPVLVRGRAIQLHPLVCPAFNADFDGDQMAVH
IPLSFESQLETRLCLLAPNNFLSPSTGEPNIQPTQDMVLGFYYLTANNRM
HLKGANNYFSNFNEVVAAYEQKQLQLHSAIWVRLPNSINLDTP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR000722RNA_pol_asu
IPR042102RNA_pol_Rpb1_3_sf
IPR007066RNA_pol_Rpb1_3