mRNA_S-dermatodea_contig830.16487.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig830.16487.1
Unique NamemRNA_S-dermatodea_contig830.16487.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE)

HSP 1 Score: 167 bits (424), Expect = 4.090e-45
Identity = 120/326 (36.81%), Postives = 137/326 (42.02%), Query Frame = 1
Query:  340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKA---------------------------------------------------------------------------------------------------------------NNTYVEETSLSDDDDDGVLDITEDPESGADEDKKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
            M  CAD ELCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G   E HRVC PC+AKK     SS QPKR +P +                     +G   R RLNFGQ+LEVLKLLD+K                                                                                                                NNT+ E+ ++SD                     KAPP+FAEL+  FGPLE+YAESCGI DAGHFLRKAK+AF AA  A+PARQLDIR F  S
Sbjct:    1 MLVCADQELCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLAWAGLEEQPEFAETLSEDAKEIFMEKVNNTFKEDENISDXX--XXXXXXXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 323          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K3B1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B1_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 2.620e-32
Identity = 68/123 (55.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query:  340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKA 702
            M  CAD +LCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G   E HRVC PC+AKK     SS QPKR +P +                     +G   R RLNFGQ+LEVLKLLD+K 
Sbjct:    1 MLVCADQQLCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKT 122          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 2.660e-29
Identity = 72/129 (55.81%), Postives = 80/129 (62.02%), Query Frame = 1
Query:  340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKANNTYVE 720
            M  CAD ELCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G   E HRVC PC+AKK     SS QPKR +P +                     +G   R RLNFGQ+LEVLKLLD+K   TY E
Sbjct:    1 MLVCADQELCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKT--TYAE 126          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K1H9_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 1.390e-25
Identity = 83/241 (34.44%), Postives = 113/241 (46.89%), Query Frame = 1
Query:  349 CADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGPRKRLNFGQKLEVLKLLDK----------------------KANNTYVEE------TSLSDDDDDGVLDITEDPESGADEDKK------APPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAF 969
            CA  ELC+LP++      GH+C  GCGGRLHG+CGEQ+   E  E  R+C  C+A K    ++S+  K K   +                     +G R R++ G K+E+L+LLDK                      KA    +E       +S +   +   +D  E  ES  DE  +      APP +A LS+ FG LE  AE  G  DA   L+KAK+A  AAH +K ARQ D+R F
Sbjct:    3 CAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGEQDQDAE-YETARICFACIASKQKGSNASTAGKGKRKGSATESGDTARQKKTKPANHPDMTGSRTRMDIGTKMEILRLLDKGTRTQKSIAEQFNCGERTVRTVKAERAKIENQAAKTRSSATTRKNLRAMDFPE--ESSDDEASEEPSIHMAPPPYAALSSHFGALETAAEGSGNRDAAFHLQKAKMAMIAAHGSKAARQTDMRQF 240          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JXS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS3_9PHAE)

HSP 1 Score: 94.4 bits (233), Expect = 1.920e-19
Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 1
Query:  634 SGPRKRLNFGQKL--EVLKLLDKKANNTYVEETSLSDDDDDGVLDITEDPESGADEDKKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
            +G  K+  F + L  +  ++  +K NNT+ E+ ++SD                     KAPP+FAEL+  FGPLE+YAESCGI DAGHFLRKAK+AF AA  A+PARQLDIR F  S
Sbjct:   41 AGLEKKPEFAETLSEDAKEIFMEKVNNTFKEDENISDXX--XXXXXXXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 155          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.990e-16
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query:  805 APPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
            APP+FAEL+  FGPLE+YAESCGI DAGHFLRKAK+AF AA  A+PARQLDIR F  S
Sbjct:  585 APPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 642          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5L393_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L393_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.210e-7
Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query:  799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIR 963
            ++APPA+AELS  F  LE  A+  G  DA  FL KAK+A  AAH+AK  RQ D+R
Sbjct:   28 RRAPPAYAELSPHFSVLEAAADESGNGDAAFFLTKAKMAMIAAHSAKRVRQADMR 82          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K1R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R1_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 5.950e-7
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:  799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
            ++APPA++ELS  FG LE  A+  G  DA   L+KAK+A  AAHAAK  RQ D R F ++
Sbjct:  240 RRAPPAYSELSPHFGVLESAADESGNGDAAFHLQKAKMAMIAAHAAKRVRQADTRVFVET 299          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JZF1_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF1_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 1.210e-6
Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
            ++APPA++ELS  FG LE  A+  G  DA   L+KAK+A  AAHAA+  RQ D+R F ++
Sbjct:  218 RRAPPAYSELSPHFGVLESAADESGNGDAAFHLQKAKMAMIAAHAAERVRQADMREFVET 277          
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JQT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT7_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 1.390e-6
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1
Query:  349 CADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGE 474
            CA  ELC+LP++      GH+C  GCGGRLHG+CGEQ+   E
Sbjct:    3 CAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGEQDQDAE 44          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5L4Y6_9PHAE4.090e-4536.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3B1_9PHAE2.620e-3255.28Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KNH6_9PHAE2.660e-2955.81Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1H9_9PHAE1.390e-2534.44HTH psq-type domain-containing protein n=2 Tax=Ect... [more]
A0A6H5JXS3_9PHAE1.920e-1947.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEK9_9PHAE1.990e-1675.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L393_9PHAE2.210e-754.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1R1_9PHAE5.950e-751.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZF1_9PHAE1.210e-650.00DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5JQT7_9PHAE1.390e-654.76Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig830contigS-dermatodea_contig830:8891..10095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-28_000290.2
Exons1
Model size1205
Cds size642
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig830.16487.1prot_S-dermatodea_contig830.16487.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig830 9230..9871 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.4207668-UTR-S-dermatodea_contig830:8890..92291622925334.4207668-UTR-S-dermatodea_contig830:8890..9229Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 8891..9229 +
1694079862.8729894-UTR-S-dermatodea_contig830:8890..92291694079862.8729894-UTR-S-dermatodea_contig830:8890..9229Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 8891..9229 +
1622925334.4466817-UTR-S-dermatodea_contig830:9871..100951622925334.4466817-UTR-S-dermatodea_contig830:9871..10095Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 9872..10095 +
1694079862.892005-UTR-S-dermatodea_contig830:9871..100951694079862.892005-UTR-S-dermatodea_contig830:9871..10095Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig830 9872..10095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925334.4328206-CDS-S-dermatodea_contig830:9229..98711622925334.4328206-CDS-S-dermatodea_contig830:9229..9871Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 9230..9871 +
1694079862.8821163-CDS-S-dermatodea_contig830:9229..98711694079862.8821163-CDS-S-dermatodea_contig830:9229..9871Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig830 9230..9871 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig830.16487.1

>prot_S-dermatodea_contig830.16487.1 ID=prot_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=214bp
MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENH
RVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQQGAAAAAKKKASAASAASG
PRKRLNFGQKLEVLKLLDKKANNTYVEETSLSDDDDDGVLDITEDPESGA
DEDKKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAK
PARQLDIRAFTQS*
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mRNA from alignment at S-dermatodea_contig830:8891..10095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig830.16487.1 ID=mRNA_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1205bp|location=Sequence derived from alignment at S-dermatodea_contig830:8891..10095+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGCTCATTTGTGTCTGTCCTCCCTCCCCAATGTCTAGTTTCCTCAAGTGA GGGGACACATTCTGCTTGGCCGAGATCAGATCCTGCATGTACAGTAGGTG GCCCGGTTTAGCGGCAACCGGTTTAGCGGAAACGCCCGATATAGCGGCAT CTAAATCTCTTGTCCCAATTTCAACCCGGTTTAGCGGCACTATTTCCGCT ATATCGGGCGACGCCCGGTATAGCGGCACTTTTGGGGTACCCCACCCCCC AATAGCGGCAATTCCATTTGTGGGAGCCCCTCCCATCTACACCACCACAC CTGGGCCGCCACACACCCCGCGTGGGCGCCACACTTATCATGCCAGCATG CGCGGATCTAGAACTCTGCAAACTACCAAACAAACCACTGGGAGAGGCGG ACGGGCACGAATGTAGGGCTGGTTGTGGGGGGCGACTTCATGGGATTTGC GGTGAACAAGAAGACGCGGGAGAGGACAACGAGAATCACCGCGTCTGCTG CCCATGCCTTGCCAAGAAGGACACAGCCGGAGACTCCTCTAGCCAGCCTA AGCGTAAAGCCCCCACCGCGGGTTTTCTGCAACAAGGCGCGGCGGCCGCG GCGAAAAAGAAGGCATCCGCTGCATCCGCTGCGTCAGGGCCGCGCAAGCG GCTCAACTTCGGCCAGAAGCTCGAAGTTCTGAAGCTGTTGGACAAGAAGG CTAACAACACGTACGTCGAAGAGACCAGCCTTTCAGACGACGACGACGAC GGCGTGCTAGACATCACCGAAGATCCTGAGAGCGGGGCGGATGAAGACAA GAAGGCGCCACCGGCGTTCGCGGAACTGTCCGCGCTTTTTGGTCCTCTAG AAGAGTACGCAGAGTCGTGTGGCATTTGTGATGCCGGGCATTTTCTCCGC AAGGCAAAGTTGGCCTTCTTCGCAGCACATGCCGCTAAGCCGGCACGGCA GTTGGACATCAGAGCGTTTACCCAGTCGTAGTGGAATTGGTCGGTAGGCG CCTACAGGTGCAAAGCATGCAACGGTTGGGATTGATGCGCCGGGGGCGGG GGCGTGTTCGACGCTTGCTCTGTCGCTTCATTTGGTTTTTTGGTTCAGTG GGTTTTGCGTTTGAGCTGAATCCATCCTACATGGCCTGCCAGATAAATTA CACTTGCGCCTCTTTACTGCTGTGTGAAGTGCTTTGTTTCTCAAGTGTAG GGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig830:8891..10095+

>mRNA_S-dermatodea_contig830.16487.1 ID=mRNA_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig830:8891..10095+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGCCAGCATGCGCGGATCTAGAACTCTGCAAACTACCAAACAAACCACT
GGGAGAGGCGGACGGGCACGAATGTAGGGCTGGTTGTGGGGGGCGACTTC
ATGGGATTTGCGGTGAACAAGAAGACGCGGGAGAGGACAACGAGAATCAC
CGCGTCTGCTGCCCATGCCTTGCCAAGAAGGACACAGCCGGAGACTCCTC
TAGCCAGCCTAAGCGTAAAGCCCCCACCGCGGGTTTTCTGCAACAAGGCG
CGGCGGCCGCGGCGAAAAAGAAGGCATCCGCTGCATCCGCTGCGTCAGGG
CCGCGCAAGCGGCTCAACTTCGGCCAGAAGCTCGAAGTTCTGAAGCTGTT
GGACAAGAAGGCTAACAACACGTACGTCGAAGAGACCAGCCTTTCAGACG
ACGACGACGACGGCGTGCTAGACATCACCGAAGATCCTGAGAGCGGGGCG
GATGAAGACAAGAAGGCGCCACCGGCGTTCGCGGAACTGTCCGCGCTTTT
TGGTCCTCTAGAAGAGTACGCAGAGTCGTGTGGCATTTGTGATGCCGGGC
ATTTTCTCCGCAAGGCAAAGTTGGCCTTCTTCGCAGCACATGCCGCTAAG
CCGGCACGGCAGTTGGACATCAGAGCGTTTACCCAGTCGTAGATGCCAGC
ATGCGCGGATCTAGAACTCTGCAAACTACCAAACAAACCACTGGGAGAGG
CGGACGGGCACGAATGTAGGGCTGGTTGTGGGGGGCGACTTCATGGGATT
TGCGGTGAACAAGAAGACGCGGGAGAGGACAACGAGAATCACCGCGTCTG
CTGCCCATGCCTTGCCAAGAAGGACACAGCCGGAGACTCCTCTAGCCAGC
CTAAGCGTAAAGCCCCCACCGCGGGTTTTCTGCAACAAGGCGCGGCGGCC
GCGGCGAAAAAGAAGGCATCCGCTGCATCCGCTGCGTCAGGGCCGCGCAA
GCGGCTCAACTTCGGCCAGAAGCTCGAAGTTCTGAAGCTGTTGGACAAGA
AGGCTAACAACACGTACGTCGAAGAGACCAGCCTTTCAGACGACGACGAC
GACGGCGTGCTAGACATCACCGAAGATCCTGAGAGCGGGGCGGATGAAGA
CAAGAAGGCGCCACCGGCGTTCGCGGAACTGTCCGCGCTTTTTGGTCCTC
TAGAAGAGTACGCAGAGTCGTGTGGCATTTGTGATGCCGGGCATTTTCTC
CGCAAGGCAAAGTTGGCCTTCTTCGCAGCACATGCCGCTAAGCCGGCACG
GCAGTTGGACATCAGAGCGTTTACCCAGTCGTAG
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