mRNA_S-dermatodea_contig830.16487.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5L4Y6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4Y6_9PHAE) HSP 1 Score: 167 bits (424), Expect = 4.090e-45 Identity = 120/326 (36.81%), Postives = 137/326 (42.02%), Query Frame = 1
Query: 340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKA---------------------------------------------------------------------------------------------------------------NNTYVEETSLSDDDDDGVLDITEDPESGADEDKKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
M CAD ELCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G E HRVC PC+AKK SS QPKR +P + +G R RLNFGQ+LEVLKLLD+K NNT+ E+ ++SD KAPP+FAEL+ FGPLE+YAESCGI DAGHFLRKAK+AF AA A+PARQLDIR F S
Sbjct: 1 MLVCADQELCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKTTYAEIARRYSISTSAISLIKGKRQQLEQAAATNARSTTSKSSRRGDFPELEKDVLALIEEARRVPLPITRATIESFGIAVRDKLAWAGLEEQPEFAETLSEDAKEIFMEKVNNTFKEDENISDXX--XXXXXXXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 323
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K3B1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3B1_9PHAE) HSP 1 Score: 127 bits (320), Expect = 2.620e-32 Identity = 68/123 (55.28%), Postives = 77/123 (62.60%), Query Frame = 1
Query: 340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKA 702
M CAD +LCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G E HRVC PC+AKK SS QPKR +P + +G R RLNFGQ+LEVLKLLD+K
Sbjct: 1 MLVCADQQLCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKT 122
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5KNH6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH6_9PHAE) HSP 1 Score: 130 bits (327), Expect = 2.660e-29 Identity = 72/129 (55.81%), Postives = 80/129 (62.02%), Query Frame = 1
Query: 340 MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGP--RKRLNFGQKLEVLKLLDKKANNTYVE 720
M CAD ELCKLPN+PLGE DGHECR GCGGRLHGICGE E+ G E HRVC PC+AKK SS QPKR +P + +G R RLNFGQ+LEVLKLLD+K TY E
Sbjct: 1 MLVCADQELCKLPNRPLGEKDGHECRLGCGGRLHGICGEPEEEGG-QEIHRVCNPCIAKKQKTPGSSKQPKRASPESELAGDGAAAKKTKPAGKAAGKAGKSTRTRLNFGQQLEVLKLLDEKT--TYAE 126
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K1H9_9PHAE (HTH psq-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 1.390e-25 Identity = 83/241 (34.44%), Postives = 113/241 (46.89%), Query Frame = 1
Query: 349 CADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHRVCCPCLAKKDTAGDSSSQPKRKAPTAGFLQXXXXXXXXXXXXXXXXXSGPRKRLNFGQKLEVLKLLDK----------------------KANNTYVEE------TSLSDDDDDGVLDITEDPESGADEDKK------APPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAF 969
CA ELC+LP++ GH+C GCGGRLHG+CGEQ+ E E R+C C+A K ++S+ K K + +G R R++ G K+E+L+LLDK KA +E +S + + +D E ES DE + APP +A LS+ FG LE AE G DA L+KAK+A AAH +K ARQ D+R F
Sbjct: 3 CAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGEQDQDAE-YETARICFACIASKQKGSNASTAGKGKRKGSATESGDTARQKKTKPANHPDMTGSRTRMDIGTKMEILRLLDKGTRTQKSIAEQFNCGERTVRTVKAERAKIENQAAKTRSSATTRKNLRAMDFPE--ESSDDEASEEPSIHMAPPPYAALSSHFGALETAAEGSGNRDAAFHLQKAKMAMIAAHGSKAARQTDMRQF 240
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JXS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXS3_9PHAE) HSP 1 Score: 94.4 bits (233), Expect = 1.920e-19 Identity = 56/117 (47.86%), Postives = 72/117 (61.54%), Query Frame = 1
Query: 634 SGPRKRLNFGQKL--EVLKLLDKKANNTYVEETSLSDDDDDGVLDITEDPESGADEDKKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
+G K+ F + L + ++ +K NNT+ E+ ++SD KAPP+FAEL+ FGPLE+YAESCGI DAGHFLRKAK+AF AA A+PARQLDIR F S
Sbjct: 41 AGLEKKPEFAETLSEDAKEIFMEKVNNTFKEDENISDXX--XXXXXXXXXXXXXXXXXKAPPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 155
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5KEK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEK9_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.990e-16 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 1
Query: 805 APPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
APP+FAEL+ FGPLE+YAESCGI DAGHFLRKAK+AF AA A+PARQLDIR F S
Sbjct: 585 APPSFAELADFFGPLEQYAESCGIGDAGHFLRKAKMAFLAATFARPARQLDIRVFADS 642
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5L393_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L393_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 2.210e-7 Identity = 30/55 (54.55%), Postives = 37/55 (67.27%), Query Frame = 1
Query: 799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIR 963
++APPA+AELS F LE A+ G DA FL KAK+A AAH+AK RQ D+R
Sbjct: 28 RRAPPAYAELSPHFSVLEAAADESGNGDAAFFLTKAKMAMIAAHSAKRVRQADMR 82
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5K1R1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1R1_9PHAE) HSP 1 Score: 61.6 bits (148), Expect = 5.950e-7 Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query: 799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
++APPA++ELS FG LE A+ G DA L+KAK+A AAHAAK RQ D R F ++
Sbjct: 240 RRAPPAYSELSPHFGVLESAADESGNGDAAFHLQKAKMAMIAAHAAKRVRQADTRVFVET 299
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JZF1_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZF1_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 1.210e-6 Identity = 30/60 (50.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 799 KKAPPAFAELSALFGPLEEYAESCGICDAGHFLRKAKLAFFAAHAAKPARQLDIRAFTQS 978
++APPA++ELS FG LE A+ G DA L+KAK+A AAHAA+ RQ D+R F ++
Sbjct: 218 RRAPPAYSELSPHFGVLESAADESGNGDAAFHLQKAKMAMIAAHAAERVRQADMREFVET 277
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Match: A0A6H5JQT7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT7_9PHAE) HSP 1 Score: 55.1 bits (131), Expect = 1.390e-6 Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 1
Query: 349 CADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGE 474
CA ELC+LP++ GH+C GCGGRLHG+CGEQ+ E
Sbjct: 3 CAAGELCQLPDQTPVAPHGHQCHGGCGGRLHGLCGEQDQDAE 44 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig830.16487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig830.16487.1 >prot_S-dermatodea_contig830.16487.1 ID=prot_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=214bp MPACADLELCKLPNKPLGEADGHECRAGCGGRLHGICGEQEDAGEDNENHback to top mRNA from alignment at S-dermatodea_contig830:8891..10095+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig830.16487.1 ID=mRNA_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1205bp|location=Sequence derived from alignment at S-dermatodea_contig830:8891..10095+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig830:8891..10095+ >mRNA_S-dermatodea_contig830.16487.1 ID=mRNA_S-dermatodea_contig830.16487.1|Name=mRNA_S-dermatodea_contig830.16487.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1284bp|location=Sequence derived from alignment at S-dermatodea_contig830:8891..10095+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |