mRNA_S-dermatodea_contig8238.16429.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A6H5L6M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M3_9PHAE) HSP 1 Score: 284 bits (727), Expect = 1.600e-88 Identity = 165/233 (70.82%), Postives = 174/233 (74.68%), Query Frame = 1
Query: 31 IATTTLLVFVRCCRGY-YVSP-CMLPASSTL--------------LRRCSTSSPSFLQGRSPTRSLSTSLSAAR---APMVGPAPPPAAPTAPLFDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTD-HGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTESGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
IA TLLV RGY YV+P CML S L RCS+ S + TSL+ R APM+GP PPA P L+DADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTD VRTVEGELETALWKAGAIADSNYGDL KIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT +GMSQYGKDKLNE+LPDDIRCFSVSKVPKSFRGR+ECTLR
Sbjct: 11 IAIKTLLVGRCFVRGYAYVAPSCMLSRFSQQRHRQLQSAGLSILPLNRCSSGS----------KRGGTSLTGVRKPRAPMIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTAAGMSQYGKDKLNENLPDDIRCFSVSKVPKSFRGREECTLR 233
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: D8LDS4_ECTSI (Pseudouridylate synthase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDS4_ECTSI) HSP 1 Score: 277 bits (708), Expect = 2.030e-85 Identity = 138/154 (89.61%), Postives = 142/154 (92.21%), Query Frame = 1
Query: 211 MVGPAPPPAAPTAPLFDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTD-HGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTESGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
M+GP PPA P L+DADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTD VRTVEGELETALWKAGAIADSNYGDL KIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT +GMSQYGKDKLNE LPDDIRCFSVSKVPKSFRGR+ECTLR
Sbjct: 1 MIGPELPPAPPPPTLYDADGNELSKPTKRKVAIVVGYVGTAFHGWQQSTDAQNVRTVEGELETALWKAGAIADSNYGDLNKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTATGMSQYGKDKLNEKLPDDIRCFSVSKVPKSFRGREECTLR 154
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A835YLA7_9STRA (Pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA7_9STRA) HSP 1 Score: 151 bits (381), Expect = 8.630e-39 Identity = 81/148 (54.73%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 268 GNELSKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSR--------------TDKGVHASKTVAAAKLLLPQETFTESGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
G E KRKVA+V+GYVGT F G Q + GVRTVE E+ETAL+ AG I +SNYGDL+KIGW RTSR TDKGVHA+KTV AKLL+ Q F +G++ K +N LP D+R FSV KVPK FRGR EC+ R
Sbjct: 7 GEEKGGVAKRKVALVLGYVGTDFSGLQIDRNSGVRTVESEMETALFNAGVIKESNYGDLSKIGWSRTSRIPLDGFVNIAYASRTDKGVHAAKTVVVAKLLVDQTQFCAAGLNAPLKAAINACLPPDLRVFSVCKVPKGFRGRGECSWR 154
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A6A5AFW9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AFW9_9STRA) HSP 1 Score: 130 bits (327), Expect = 1.220e-34 Identity = 68/135 (50.37%), Postives = 89/135 (65.93%), Query Frame = 1
Query: 271 NELSKPTKRKVAIVVGYVGTAFHGWQ-QSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFT-ESGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
+E K K KVA+V GY GT +HG Q Q V T+E E+ AL+KAG I +SNYGD++KIGW R+SRTDKGVHAS V + KLL+ + SG + ++N HLP DIR F+ +KV +SFR R++C LR
Sbjct: 31 DEPGKKRKVKVALVTGYTGTGYHGVQIQENAVDVPTIEHEVRAALFKAGCILESNYGDMSKIGWSRSSRTDKGVHASSIVLSGKLLVQDDRIDPRSGRIAHLPAEINAHLPADIRVFTATKVHQSFRAREDCILR 165
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A1V9Y8S5_9STRA (Ubiquitin fusion degradation protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Y8S5_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.080e-33 Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 280 SKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTESGMSQYG-KDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
+K K K A+V GY+GT FHG Q + V T+E EL AL+ AG I++SNY D+ KIGW R+SRTDKGVHAS V +AKLL+ +++ ES G + LN+HLPD IR F+ +KV +SFR R++C LR
Sbjct: 18 AKKRKVKAALVSGYLGTGFHGVQLQEHNNVPTIEQELRNALFAAGCISESNYADMAKIGWSRSSRTDKGVHASCIVFSAKLLVDEDSIDESTGRLIGLPEALNKHLPDTIRMFTATKVHRSFRAREDCLLR 148
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A067C0B2_SAPPC (PseudoU_synth_1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067C0B2_SAPPC) HSP 1 Score: 133 bits (335), Expect = 8.440e-33 Identity = 68/131 (51.91%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 280 SKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTESGMSQYG-KDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
+K K KVA+V GY+GT +HG Q +GV TVE E+ AL+KAG I +SN DL+KIGW R+SRTDKGVHAS V +AKLL+ ++ E+ G + +N HLP IR F+ +KV +SFR R++CTLR
Sbjct: 19 AKKRKVKVALVSGYLGTGYHGVQLQDTNGVPTVENEVRAALFKAGCILESNLADLSKIGWSRSSRTDKGVHASCIVFSAKLLVDSDSINETDGRLRGLPEAINAHLPPSIRMFTATKVHQSFRAREDCTLR 149
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A6G0WDH2_9STRA (PseudoU_synth_1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WDH2_9STRA) HSP 1 Score: 132 bits (333), Expect = 1.880e-32 Identity = 66/136 (48.53%), Postives = 94/136 (69.12%), Query Frame = 1
Query: 271 NELSKPTKRKVAI--VVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTE-SGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
NE + KRKV + V+GY GT +HG Q + V T+E E+ +AL+KAG I +SNYGD++KIGW R+SRTDKGVHA+ V +AKLL+ +E + +G + +N HLP++IR F+ +KV +SFR R+EC +R
Sbjct: 27 NEFKEDKKRKVKVGLVMGYTGTGYHGVQIQEKNDVPTIEHEVRSALFKAGCILESNYGDMSKIGWSRSSRTDKGVHATSIVVSAKLLVHEERIDKKTGRIAQLVEDINVHLPENIRVFTATKVHQSFRAREECIMR 162
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A024U417_9STRA (tRNA pseudouridine(38-40) synthase n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U417_9STRA) HSP 1 Score: 130 bits (326), Expect = 1.900e-31 Identity = 67/133 (50.38%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 274 ELSKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTE-SGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
E K K KVA+V GY GT +HG Q + V TVE + AL+KAG I +SNYGD++KIGW R+SRTDKGVHAS V + KLL+ SG + D++N +LP DIR F+ +KV +SFR R++C LR
Sbjct: 31 ESGKKRKVKVALVTGYTGTGYHGVQIQENVNVPTVEHAVREALFKAGCILESNYGDMSKIGWSRSSRTDKGVHASSIVLSGKLLVHGNRIDPVSGRIAHLPDQINAYLPQDIRVFTATKVHQSFRAREDCILR 163
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A485KC76_9STRA (Aste57867_2617 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KC76_9STRA) HSP 1 Score: 129 bits (324), Expect = 2.780e-31 Identity = 64/131 (48.85%), Postives = 89/131 (67.94%), Query Frame = 1
Query: 280 SKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTE-SGMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
+K K KV +V GY GT +HG Q + V T+E ++ AL+KAG I +SNY D++KIGW R+SRTDKGVHA+ V +AKLL+ ++ +G + D++N HLPD +R FS +KV +SFR R+EC LR
Sbjct: 20 AKKRKVKVGLVTGYTGTGYHGVQIQENGDVPTIEYDVREALFKAGCILESNYADMSKIGWSRSSRTDKGVHATAIVLSAKLLVHEDRIDPVTGRIAHLVDEVNAHLPDAVRVFSATKVHQSFRAREECILR 150
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Match: A0A1V9Z3D6_9STRA (Ubiquitin fusion degradation protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z3D6_9STRA) HSP 1 Score: 130 bits (328), Expect = 2.890e-31 Identity = 66/131 (50.38%), Postives = 90/131 (68.70%), Query Frame = 1
Query: 280 SKPTKRKVAIVVGYVGTAFHGWQQSTDHGVRTVEGELETALWKAGAIADSNYGDLTKIGWGRTSRTDKGVHASKTVAAAKLLLPQETFTES-GMSQYGKDKLNEHLPDDIRCFSVSKVPKSFRGRDECTLR 669
+K K KVA+V GY+GT FHG Q +GV TVE L +AL+KAG I DSN+ D+ KIGW R+SRTDKGVHAS V + KLL+ ++ E+ G + + +N HLP+ +R F+ +KV +SFR R++C LR
Sbjct: 1118 AKKRKVKVALVSGYLGTGFHGVQLQDRNGVPTVEDTLRSALFKAGCIRDSNFDDMNKIGWSRSSRTDKGVHASIIVFSGKLLVDDDSIDEATGRLRGLPETINAHLPETVRIFTATKVHQSFRAREDCLLR 1248 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8238.16429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8238.16429.1 >prot_S-dermatodea_contig8238.16429.1 ID=prot_S-dermatodea_contig8238.16429.1|Name=mRNA_S-dermatodea_contig8238.16429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=223bp MLVDRRPYCLIATTTLLVFVRCCRGYYVSPCMLPASSTLLRRCSTSSPSFback to top mRNA from alignment at S-dermatodea_contig8238:163..1928- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8238.16429.1 ID=mRNA_S-dermatodea_contig8238.16429.1|Name=mRNA_S-dermatodea_contig8238.16429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1766bp|location=Sequence derived from alignment at S-dermatodea_contig8238:163..1928- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8238:163..1928- >mRNA_S-dermatodea_contig8238.16429.1 ID=mRNA_S-dermatodea_contig8238.16429.1|Name=mRNA_S-dermatodea_contig8238.16429.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1338bp|location=Sequence derived from alignment at S-dermatodea_contig8238:163..1928- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |