prot_S-dermatodea_contig8211.16408.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8211.16408.1
Unique Nameprot_S-dermatodea_contig8211.16408.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length338
Homology
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: D7FTW6_ECTSI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW6_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 1.480e-113
Identity = 211/363 (58.13%), Postives = 236/363 (65.01%), Query Frame = 0
Query:    2 PVEELSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGRIRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGN----NNKPKDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVMLANGVTVEKALAKLKTAATKKARQEQRSRDTRSPVLGDSASPHPDGQRKRGGAGPNSRSPTAAGARNVRDGQIRSRSLTELELXXXXXXGAGVSPKAPRRMREDGGSSGDG---------------SDVTPSARKPRSASNVDSL-------SYGGGEGGSPPRHHM 337
            PVEEL E+TKAALVK V+FY SDENLPTDAFMKKKVKAGG QGWV LKVI +FPK+KK+SKD+RAIA ALE S+ LVV K  R+RRKTPF FPDK+G +DV SRTV+AVNIP +STVESL  FFS+CGVAE IRVI  S        +N+   IQ P G +RDLYATCQ+STLEEAIRAVNELTDR SWRGG RV LANGVTVEKALAKLK A+ KKA+QEQ+ R                          NSRSP   G RNVRDGQ+RSRSLTELEL        G S +                               +  P+ RKPRS SNVD+L       S GG E GSPPRH M
Sbjct:   83 PVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKMSKDIRAIALALEDSQALVVAKATRVRRKTPFKFPDKDGRADVTSRTVVAVNIPAESTVESLTPFFSSCGVAELIRVIHKSKTAGTTKTDNRSSGIQAPAGPNRDLYATCQFSTLEEAIRAVNELTDRKSWRGGLRVSLANGVTVEKALAKLKAASNKKAKQEQKQRV-------------------------NSRSPVDRGQRNVRDGQMRSRSLTELELERTAGASGGASSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEAAPTTRKPRSVSNVDALFSSSTGGSGGGIENGSPPRHTM 420          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A5J4Y4J7_9CHLO (La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y4J7_9CHLO)

HSP 1 Score: 129 bits (325), Expect = 3.900e-31
Identity = 76/205 (37.07%), Postives = 117/205 (57.07%), Query Frame = 0
Query:   12 AALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVVKDGRIRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGNNNKPKDIQPP-----MGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVMLANGVTVEKALAKLKTAAT 211
            A +VK V+FY SD NLPTD F+ K+V+    +GWV +++IA+F ++K LSKD++ IA+ALE S  LVV   R+RRK P    D+   ++V  RT +  N+P  +T++SL   FSA G  + +R+ +      N+ P+ I        +   R L+A  ++   E+   AV +LTD N+WR G R  +      ++  A L+T  T
Sbjct:   50 AKIVKQVNFYFSDTNLPTDNFLLKEVRKTP-EGWVPIRLIASFKRMKSLSKDIKVIAAALETSTELVVSGHRVRRKEPLPQVDE---TEVLYRTAIVDNLPDQATIDSLTGMFSAAGKVKMVRICQP-----NSGPRSIAQSIPGADLAVSRQLHALIEFENQEQVAAAVKQLTDSNNWRSGLRAAIEASGESQRPDADLQTDQT 245          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A6H5JW40_9PHAE (HTH La-type RNA-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW40_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 8.150e-29
Identity = 68/87 (78.16%), Postives = 75/87 (86.21%), Query Frame = 0
Query:    2 PVEELSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGRIRRK 87
            PVEEL E+TKAALVK V+FY SDENLPTDAFMKKKVKAGG QGWV LKVI +FPK+KKLSKD+RAIA ALE S+ LVV K  R+RRK
Sbjct: 1164 PVEELPEDTKAALVKQVEFYFSDENLPTDAFMKKKVKAGGAQGWVPLKVICSFPKVKKLSKDIRAIALALEDSQALVVAKATRVRRK 1250          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: D8QWC1_SELML (Uncharacterized protein (Fragment) n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QWC1_SELML)

HSP 1 Score: 119 bits (299), Expect = 4.360e-28
Identity = 72/193 (37.31%), Postives = 113/193 (58.55%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGNNNKP---KDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVML 193
            LSE+T+  +V+ V+FY SD NLPTD ++ K +K    +G+V + +I +F K+K+L+K+  A+A+AL +S  LVV +DG+ +RR  P    D   + ++  RTV+A N+P D +++SL   F   G  + +RV       + N     K  +        L+A  +Y TLE+A +AV ELTD+ +WR G  V L
Sbjct:   76 LSEDTRTQVVQQVEFYFSDANLPTDNYLMKFIKKDP-EGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADID---LDEIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPGSANSVNSAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 264          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A2R6XE71_MARPO (Uncharacterized protein n=3 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XE71_MARPO)

HSP 1 Score: 122 bits (307), Expect = 1.520e-27
Identity = 74/191 (38.74%), Postives = 118/191 (61.78%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIR-SSGKGNNNKPKDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVML 193
            ++EE KA +VK V+FY SD+NLPTD ++ K VK    +G+V + V+A+F K+K L K+   +A+AL  S +LVV +DG+ +RR  P   PD + + +V SRTV+A N+P D ++ES+   F + G  + +R+ +  +  G +      +  M     L+A  ++ T+E+A +AV+ LTD  +WR G RV L
Sbjct:  195 VNEELKAKIVKQVEFYFSDQNLPTDNYLMKFVKKDP-EGFVPIPVVASFRKIKNLVKNHGIVAAALRNSTLLVVSEDGKKVRRAQP--LPDVD-LEEVQSRTVVAENLPEDHSIESVEQLFGSVGNVKMVRICQPEAANGASQTAAKFKSDMVVSNKLHALIEFETVEQAEKAVSALTDERNWRSGLRVRL 381          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A2K1LA96_PHYPA (Uncharacterized protein n=1 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1LA96_PHYPA)

HSP 1 Score: 122 bits (306), Expect = 2.890e-27
Identity = 77/192 (40.10%), Postives = 112/192 (58.33%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVI--RSSGKGNNNKPKDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVML 193
            L+EETKA +VK V+FY SD NLPTD ++ K VK    +G+V + V+A+F K+K L K+   +A+ L  S  LVV +DG+ +RR  P    D E   ++ +RTV+A N+P D ++ESL   F   G  + +R+    ++   N    K  +  M     L+A  +Y T+E A +AV ELTD  +WR G RV L
Sbjct:  241 LTEETKAKIVKQVEFYFSDTNLPTDNYLMKFVKKDS-EGFVPIPVVASFRKIKNLVKNHGVLAATLRNSTQLVVSEDGKKVRRAHPLPEVDLE---EIQARTVVAENLPEDHSIESLEQLFGKVGTVKMVRICSPEAANGANATGAKHPKTDMLVSNKLHALVEYETVELAEKAVAELTDERNWRSGLRVRL 428          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: UPI000D1C965E (la-related protein 6C n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=UPI000D1C965E)

HSP 1 Score: 121 bits (303), Expect = 4.540e-27
Identity = 73/193 (37.82%), Postives = 114/193 (59.07%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVV-KDGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGNNNKP---KDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVML 193
            LSE+T+A +V+ V+FY SD NLPTD ++ K +K    +G+V + +I +F K+K+L+K+  A+A+AL +S  LVV +DG+ +RR  P    D   + ++  RTV+A N+P D +++SL   F   G  + +RV       + N     K  +        L+A  +Y TLE+A +AV ELTD+ +WR G  V L
Sbjct:  173 LSEDTRAQVVQQVEFYFSDANLPTDNYLMKFIKKDP-EGFVPIPIIGSFRKIKQLTKNYGALAAALRSSSKLVVSEDGKKVRRAEPLADID---LDEIQGRTVVAENLPEDHSIQSLEKLFGTIGSVKMVRVCEPGSANSVNNAALAKHSKTDRVVSNKLHALVEYETLEQAEKAVAELTDQRNWRSGLHVRL 361          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A061SIH4_9CHLO (La-related protein 7 n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SIH4_9CHLO)

HSP 1 Score: 118 bits (295), Expect = 4.450e-26
Identity = 75/200 (37.50%), Postives = 116/200 (58.00%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVVK-DGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDST-VESLMSFFSACGVAETIRVIR-----------SSGKGNNNKPKDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRV 191
            +S E  +A++K V+FY  D NLPTD F+ + VK    QGWV+L +IA F ++K L+  +  IA AL+ SE LVV  DG+ +RRK P    D+   ++ +SRTV+A N+P ++  +++L   FS CG    +RV +           +SG+G++   K     +     ++A  ++S+ EEA  A  ELTD +SWR G +V
Sbjct:   53 VSTELASAILKQVEFYFGDTNLPTDEFLLQHVKKSP-QGWVNLNLIARFKRMKALTTSVPTIAEALQNSEFLVVSSDGKAVRRKNPLPKIDE---AEASSRTVVAENLPAEAHGIDALTELFSKCGTVRMVRVCQPGEVKSVLQREASGRGSHGGGKQS---LTVSNQVHALVEFSSAEEAAAACRELTDDSSWRSGLKV 245          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: A0A1Y1HK12_KLENI (HTH La-type RNA-binding domain-containing protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HK12_KLENI)

HSP 1 Score: 117 bits (294), Expect = 1.750e-25
Identity = 75/196 (38.27%), Postives = 110/196 (56.12%), Query Frame = 0
Query:    5 ELSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVVK-DGR-IRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGN-NNKPKDIQ------PPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRV 191
            E+SEE +  +VK V+FYLSD+NLPTD F+ K V+    +GWV +K I  F K+K LSK+   IA A+ +S+ LVV  DG+ +RR  P   PD   + D+  RTV+A N+P + T++ + + FS  G    +R+    G  +     +D Q      P +      +A  +  + E A RA  ELTDR +WR G +V
Sbjct:  346 EISEELREKIVKQVEFYLSDQNLPTDNFLMKLVRKDP-EGWVPIKTIGGFNKIKSLSKNHAVIAQAVRSSQQLVVSSDGKKVRRAQP--LPDVN-LFDIQMRTVVAENLPSNPTIQGMEALFSQVGKVNMVRICHPEGANSATQSARDAQAKFKDGPSLLVSTRQHALIEMESFELADRACAELTDRQNWRSGLQV 537          
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Match: J3L476_ORYBR (Uncharacterized protein n=1 Tax=Oryza brachyantha TaxID=4533 RepID=J3L476_ORYBR)

HSP 1 Score: 114 bits (285), Expect = 4.220e-25
Identity = 79/193 (40.93%), Postives = 107/193 (55.44%), Query Frame = 0
Query:    6 LSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKVIANFPKLKKLSKDLRAIASALEASEMLVVK-DG-RIRRKTPFTFPDKEGMSDVASRTVLAVNIPPDSTVESLMSFFSACG--VAETIRVIRSSGKGNNNKPKDIQPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVMLA 194
            L++E    +VK V++Y SDENLPTD F+ K VK    QG+V L VIA+F ++KKLS+DL  I +AL  S  LVV  DG R+RR  P     +  + DV  RTV+  N+P D + ES+ + F   G  V  TI    S G+    K  DI         ++A  +Y T E A +A   L D ++WR G +V LA
Sbjct:   75 LTDELCGRIVKQVEYYFSDENLPTDEFLMKFVKKNK-QGFVPLGVIASFRRMKKLSQDLSLIEAALRTSSKLVVSTDGKRVRRMHPL---QQNELKDVKKRTVVVENLPSDFSEESIHATFETVGKIVKITIHDQHSVGESATIKNHDIM----LSNKVHALVEYETTEAAEKAATTLNDESNWRAGMKVRLA 259          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8211.16408.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTW6_ECTSI1.480e-11358.13HTH La-type RNA-binding domain-containing protein ... [more]
A0A5J4Y4J7_9CHLO3.900e-3137.07La-related 7 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608... [more]
A0A6H5JW40_9PHAE8.150e-2978.16HTH La-type RNA-binding domain-containing protein ... [more]
D8QWC1_SELML4.360e-2837.31Uncharacterized protein (Fragment) n=2 Tax=Selagin... [more]
A0A2R6XE71_MARPO1.520e-2738.74Uncharacterized protein n=3 Tax=Marchantia polymor... [more]
A0A2K1LA96_PHYPA2.890e-2740.10Uncharacterized protein n=1 Tax=Physcomitrium pate... [more]
UPI000D1C965E4.540e-2737.82la-related protein 6C n=2 Tax=Selaginella moellend... [more]
A0A061SIH4_9CHLO4.450e-2637.50La-related protein 7 n=2 Tax=Tetraselmis sp. GSL01... [more]
A0A1Y1HK12_KLENI1.750e-2538.27HTH La-type RNA-binding domain-containing protein ... [more]
J3L476_ORYBR4.220e-2540.93Uncharacterized protein n=1 Tax=Oryza brachyantha ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 199..219
NoneNo IPR availablePANTHERPTHR22792LUPUS LA PROTEIN-RELATEDcoord: 6..226
NoneNo IPR availablePANTHERPTHR22792:SF102LA-RELATED PROTEIN 6Acoord: 6..226
IPR006630La-type HTH domainSMARTSM00715lacoord: 8..87
e-value: 4.8E-21
score: 85.9
IPR006630La-type HTH domainPFAMPF05383Lacoord: 15..72
e-value: 6.8E-18
score: 64.5
IPR006630La-type HTH domainPROSITEPS50961HTH_LAcoord: 4..96
score: 21.712
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 95..215
e-value: 1.0E-8
score: 37.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 6..93
e-value: 1.4E-22
score: 81.3
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 104..198
score: 8.569
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 101..197
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 7..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8211contigS-dermatodea_contig8211:64..8508 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8211.16408.1mRNA_S-dermatodea_contig8211.16408.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8211 64..8508 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8211.16408.1 ID=prot_S-dermatodea_contig8211.16408.1|Name=mRNA_S-dermatodea_contig8211.16408.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=338bp
APVEELSEETKAALVKLVDFYLSDENLPTDAFMKKKVKAGGVQGWVSLKV
IANFPKLKKLSKDLRAIASALEASEMLVVKDGRIRRKTPFTFPDKEGMSD
VASRTVLAVNIPPDSTVESLMSFFSACGVAETIRVIRSSGKGNNNKPKDI
QPPMGAHRDLYATCQYSTLEEAIRAVNELTDRNSWRGGRRVMLANGVTVE
KALAKLKTAATKKARQEQRSRDTRSPVLGDSASPHPDGQRKRGGAGPNSR
SPTAAGARNVRDGQIRSRSLTELELEANAGGGAGVSPKAPRRMREDGGSS
GDGSDVTPSARKPRSASNVDSLSYGGGEGGSPPRHHM*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006630La_HTH
IPR012677Nucleotide-bd_a/b_plait_sf
IPR036388WH-like_DNA-bd_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf
IPR036390WH_DNA-bd_sf