mRNA_S-dermatodea_contig82074.16401.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig82074.16401.1
Unique NamemRNA_S-dermatodea_contig82074.16401.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 155 bits (391), Expect = 1.470e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:   37 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 294
            M ++V PGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE+R  GADEAEGQ++AKRV
Sbjct: 1113 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRV 1198
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 155 bits (391), Expect = 1.480e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 1 
Query:   37 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 294
            M ++V PGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE+R  GADEAEGQ++AKRV
Sbjct: 1112 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRV 1197
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2GUH7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUH7_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.140e-31
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 1 
Query:   40 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 306
            HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL  R E + +A   DIAK V  + 
Sbjct:   27 HAKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYL--RPEVSGDA---DIAKTVHSLI 110
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 124 bits (311), Expect = 9.070e-31
Identity = 66/86 (76.74%), Postives = 70/86 (81.40%), Query Frame = 1 
Query:   37 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 294
            M A+V  GEMCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + Q+ AKRV
Sbjct: 1104 MSARVSAGEMCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRV 1184
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2KD87_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KD87_9STRA)

HSP 1 Score: 120 bits (302), Expect = 8.850e-30
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 1 
Query:   40 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 306
            HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL+    G       D+AK V  + 
Sbjct:  249 HAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQDHVSG-----DADVAKLVHSMI 332
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A699ZZ48_HAELA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZZ48_HAELA)

HSP 1 Score: 112 bits (279), Expect = 9.780e-30
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   40 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEA 267
             AQ  PGE  G +AAQS+GEP TQMTLNTFHFAGVSAKNVTLGVPR+ EIIN+AKN++TPSL++YL++R     EA
Sbjct:   22 QAQANPGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINLAKNIKTPSLSVYLDERHANDKEA 97
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: B8BQ02_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ02_THAPS)

HSP 1 Score: 121 bits (303), Expect = 1.090e-29
Identity = 64/102 (62.75%), Postives = 74/102 (72.55%), Query Frame = 1 
Query:    1 IIYMLSTTVCTCMHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 306
            +I++L        HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL+    G       D+AK V  + 
Sbjct: 1061 LIWVLGEIEARFHHAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSG-----DADVAKLVHSMI 1157
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A699WYF7_TANCI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699WYF7_TANCI)

HSP 1 Score: 111 bits (277), Expect = 2.150e-29
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:   49 VPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 306
            V PGEM G +AAQSIGEP TQMTLN FH+AGVSAKNVTLGVPR++EIIN+AKN++TPSL++YL+      D ++  D AK V+C  
Sbjct:    3 VAPGEMIGCVAAQSIGEPATQMTLNNFHYAGVSAKNVTLGVPRLREIINIAKNIKTPSLSVYLKP-----DISKTNDQAKNVQCAL 83
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2K6R8_9STRA (DNA-directed RNA polymerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6R8_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.670e-29
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 1 
Query:   40 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 306
             ++V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TPSLT+YL+Q   G       D+AK V  + 
Sbjct:  142 QSKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPSLTVYLQQHVSG-----DSDVAKLVHSLL 225
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BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A2R5GU24_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU24_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.780e-29
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 1 
Query:   43 AQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 294
            + V PGEMCGVLAAQSIGEP TQMTLNTFHFAGVSAKNVTLGVPR+KE+IN AKNV+TPS+T+YL++      EA   ++  R+
Sbjct: 1073 SMVNPGEMCGVLAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEVINGAKNVKTPSVTVYLDEEHRNT-EARASEVMSRL 1155
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.470e-4189.53DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.480e-4189.53DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A7S2GUH7_9STRA2.140e-3173.03DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel... [more]
A0A836CHC4_9STRA9.070e-3176.74DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2KD87_9STRA8.850e-3069.66DNA-directed RNA polymerase (Fragment) n=1 Tax=Ske... [more]
A0A699ZZ48_HAELA9.780e-3069.74DNA-directed RNA polymerase (Fragment) n=1 Tax=Hae... [more]
B8BQ02_THAPS1.090e-2962.75DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A699WYF7_TANCI2.150e-2963.95DNA-directed RNA polymerase (Fragment) n=1 Tax=Tan... [more]
A0A7S2K6R8_9STRA2.670e-2968.54DNA-directed RNA polymerase n=1 Tax=Leptocylindrus... [more]
A0A2R5GU24_9STRA3.780e-2969.05DNA-directed RNA polymerase subunit n=1 Tax=Hondae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82074contigS-dermatodea_contig82074:338..664 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score154.8
Seed ortholog evalue2.2e-35
Seed eggNOG ortholog2880.D8LRY3
Preferred nameRPB1
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0260@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.414748-CDS-S-dermatodea_contig82074:337..6551622925328.414748-CDS-S-dermatodea_contig82074:337..655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82074 338..655 -
1694079858.6991365-CDS-S-dermatodea_contig82074:337..6551694079858.6991365-CDS-S-dermatodea_contig82074:337..655Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig82074 338..655 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925328.4281766-UTR-S-dermatodea_contig82074:655..6641622925328.4281766-UTR-S-dermatodea_contig82074:655..664Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82074 656..664 -
1694079858.715269-UTR-S-dermatodea_contig82074:655..6641694079858.715269-UTR-S-dermatodea_contig82074:655..664Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig82074 656..664 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82074.16401.1prot_S-dermatodea_contig82074.16401.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig82074 338..655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig82074.16401.1

>prot_S-dermatodea_contig82074.16401.1 ID=prot_S-dermatodea_contig82074.16401.1|Name=mRNA_S-dermatodea_contig82074.16401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MLSTTVCTCMHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNV
TLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIFR
RYVKRC
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mRNA from alignment at S-dermatodea_contig82074:338..664-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig82074.16401.1 ID=mRNA_S-dermatodea_contig82074.16401.1|Name=mRNA_S-dermatodea_contig82074.16401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at S-dermatodea_contig82074:338..664- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATAATATACATGTTATCTACTACTGTATGTACGTGTATGCATGCCCAGGT
CCCACCGGGCGAGATGTGCGGCGTGCTCGCGGCGCAGTCGATCGGGGAAC
CCATCACCCAGATGACCCTCAATACCTTCCACTTCGCCGGAGTTAGCGCC
AAGAACGTTACCCTCGGAGTGCCGCGTGTGAAGGAGATCATCAACGTGGC
CAAGAACGTGCGGACGCCGTCGCTGACGATCTACCTGGAGCAGAGGGAGG
AGGGGGCGGACGAGGCAGAGGGCCAGGACATCGCGAAGAGGGTGAGATGT
ATTTTTAGGAGGTATGTTAAAAGGTGT
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Coding sequence (CDS) from alignment at S-dermatodea_contig82074:338..664-

>mRNA_S-dermatodea_contig82074.16401.1 ID=mRNA_S-dermatodea_contig82074.16401.1|Name=mRNA_S-dermatodea_contig82074.16401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at S-dermatodea_contig82074:338..664- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGTTATCTACTACTGTATGTACGTGTATGCATGCCCAGGTCCCACCGGG
CGAGATGTGCGGCGTGCTCGCGGCGCAGTCGATCGGGGAACCCATCACCC
AGATGACCCTCAATACCTTCCACTTCGCCGGAGTTAGCGCCAAGAACGTT
ACCCTCGGAGTGCCGCGTGTGAAGGAGATCATCAACGTGGCCAAGAACGT
GCGGACGCCGTCGCTGACGATCTACCTGGAGCAGAGGGAGGAGGGGGCGG
ACGAGGCAGAGGGCCAGGACATCGCGAAGAGGGTGAGATGTATTTTTAGG
AGGTATGTTAAAAGGTGTATGTTATCTACTACTGTATGTACGTGTATGCA
TGCCCAGGTCCCACCGGGCGAGATGTGCGGCGTGCTCGCGGCGCAGTCGA
TCGGGGAACCCATCACCCAGATGACCCTCAATACCTTCCACTTCGCCGGA
GTTAGCGCCAAGAACGTTACCCTCGGAGTGCCGCGTGTGAAGGAGATCAT
CAACGTGGCCAAGAACGTGCGGACGCCGTCGCTGACGATCTACCTGGAGC
AGAGGGAGGAGGGGGCGGACGAGGCAGAGGGCCAGGACATCGCGAAGAGG
GTGAGATGTATTTTTAGGAGGTATGTTAAAAGGTGT
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