prot_S-dermatodea_contig82074.16401.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig82074.16401.1
Unique Nameprot_S-dermatodea_contig82074.16401.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length106
Homology
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.780e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0
Query:   10 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 95
            M ++V PGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE+R  GADEAEGQ++AKRV
Sbjct: 1113 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRV 1198          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 154 bits (390), Expect = 1.790e-41
Identity = 77/86 (89.53%), Postives = 82/86 (95.35%), Query Frame = 0
Query:   10 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 95
            M ++V PGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLE+R  GADEAEGQ++AKRV
Sbjct: 1112 MSSKVGPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEERAAGADEAEGQEVAKRV 1197          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2GUH7_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2GUH7_9STRA)

HSP 1 Score: 120 bits (300), Expect = 2.680e-31
Identity = 65/89 (73.03%), Postives = 72/89 (80.90%), Query Frame = 0
Query:   11 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 99
            HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL  R E + +A   DIAK V  + 
Sbjct:   27 HAKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYL--RPEVSGDA---DIAKTVHSLI 110          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 124 bits (310), Expect = 1.100e-30
Identity = 66/86 (76.74%), Postives = 70/86 (81.40%), Query Frame = 0
Query:   10 MHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 95
            M A+V  GEMCGVLAAQSIGEPITQMTLNTFH+AGVSAKNVTLGVPRVKEIINVA N RTPSLTIYL       D  + Q+ AKRV
Sbjct: 1104 MSARVSAGEMCGVLAAQSIGEPITQMTLNTFHYAGVSAKNVTLGVPRVKEIINVAANPRTPSLTIYL-----SPDSEQDQESAKRV 1184          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2KD87_9STRA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KD87_9STRA)

HSP 1 Score: 120 bits (301), Expect = 1.080e-29
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   11 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 99
            HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL+    G       D+AK V  + 
Sbjct:  249 HAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQDHVSG-----DADVAKLVHSMI 332          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A699ZZ48_HAELA (DNA-directed RNA polymerase (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZZ48_HAELA)

HSP 1 Score: 111 bits (278), Expect = 1.240e-29
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 0
Query:   11 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEA 86
             AQ  PGE  G +AAQS+GEP TQMTLNTFHFAGVSAKNVTLGVPR+ EIIN+AKN++TPSL++YL++R     EA
Sbjct:   22 QAQANPGECVGTVAAQSLGEPTTQMTLNTFHFAGVSAKNVTLGVPRLTEIINLAKNIKTPSLSVYLDERHANDKEA 97          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: B8BQ02_THAPS (DNA-directed RNA polymerase subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BQ02_THAPS)

HSP 1 Score: 120 bits (301), Expect = 1.790e-29
Identity = 62/89 (69.66%), Postives = 69/89 (77.53%), Query Frame = 0
Query:   11 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 99
            HA+V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TP LTIYL+    G       D+AK V  + 
Sbjct: 1074 HAKVSPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPGLTIYLQNHVSG-----DADVAKLVHSMI 1157          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A699WYF7_TANCI (DNA-directed RNA polymerase (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699WYF7_TANCI)

HSP 1 Score: 110 bits (276), Expect = 2.710e-29
Identity = 55/86 (63.95%), Postives = 68/86 (79.07%), Query Frame = 0
Query:   14 VPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 99
            V PGEM G +AAQSIGEP TQMTLN FH+AGVSAKNVTLGVPR++EIIN+AKN++TPSL++YL+      D ++  D AK V+C  
Sbjct:    3 VAPGEMIGCVAAQSIGEPATQMTLNNFHYAGVSAKNVTLGVPRLREIINIAKNIKTPSLSVYLKP-----DISKTNDQAKNVQCAL 83          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A7S2K6R8_9STRA (DNA-directed RNA polymerase n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K6R8_9STRA)

HSP 1 Score: 119 bits (299), Expect = 3.240e-29
Identity = 61/89 (68.54%), Postives = 70/89 (78.65%), Query Frame = 0
Query:   11 HAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIF 99
             ++V PGEM GVLAAQSIGEP TQMTLNTFH+AGVSAKNVTLGVPR+KEIINVAK V+TPSLT+YL+Q   G       D+AK V  + 
Sbjct:  142 QSKVNPGEMAGVLAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLKEIINVAKTVKTPSLTVYLQQHVSG-----DSDVAKLVHSLL 225          
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Match: A0A2R5GU24_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU24_9STRA)

HSP 1 Score: 119 bits (298), Expect = 4.570e-29
Identity = 58/84 (69.05%), Postives = 69/84 (82.14%), Query Frame = 0
Query:   12 AQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNVTLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRV 95
            + V PGEMCGVLAAQSIGEP TQMTLNTFHFAGVSAKNVTLGVPR+KE+IN AKNV+TPS+T+YL++      EA   ++  R+
Sbjct: 1073 SMVNPGEMCGVLAAQSIGEPATQMTLNTFHFAGVSAKNVTLGVPRLKEVINGAKNVKTPSVTVYLDEEHRNT-EARASEVMSRL 1155          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig82074.16401.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.780e-4189.53DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.790e-4189.53DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A7S2GUH7_9STRA2.680e-3173.03DNA-directed RNA polymerase (Fragment) n=1 Tax=Hel... [more]
A0A836CHC4_9STRA1.100e-3076.74DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
A0A7S2KD87_9STRA1.080e-2969.66DNA-directed RNA polymerase (Fragment) n=1 Tax=Ske... [more]
A0A699ZZ48_HAELA1.240e-2969.74DNA-directed RNA polymerase (Fragment) n=1 Tax=Hae... [more]
B8BQ02_THAPS1.790e-2969.66DNA-directed RNA polymerase subunit n=1 Tax=Thalas... [more]
A0A699WYF7_TANCI2.710e-2963.95DNA-directed RNA polymerase (Fragment) n=1 Tax=Tan... [more]
A0A7S2K6R8_9STRA3.240e-2968.54DNA-directed RNA polymerase n=1 Tax=Leptocylindrus... [more]
A0A2R5GU24_9STRA4.570e-2969.05DNA-directed RNA polymerase subunit n=1 Tax=Hondae... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 13..83
e-value: 5.6E-30
score: 104.7
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 8..95
NoneNo IPR availablePANTHERPTHR19376:SF37DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB1coord: 8..95
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 8..79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig82074contigS-dermatodea_contig82074:338..655 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig82074.16401.1mRNA_S-dermatodea_contig82074.16401.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig82074 338..664 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig82074.16401.1 ID=prot_S-dermatodea_contig82074.16401.1|Name=mRNA_S-dermatodea_contig82074.16401.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=106bp
MLSTTVCTCMHAQVPPGEMCGVLAAQSIGEPITQMTLNTFHFAGVSAKNV
TLGVPRVKEIINVAKNVRTPSLTIYLEQREEGADEAEGQDIAKRVRCIFR
RYVKRC
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007081RNA_pol_Rpb1_5