mRNA_S-dermatodea_contig814.16336.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig814.16336.1
Unique NamemRNA_S-dermatodea_contig814.16336.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 7.250e-12
Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDM 243
            VPL+ D T+TLH  GN+++S   K +ALR L+++ELV E R+ I+ + TD  +ADI TK  ++ R ++LL  I SSF++
Sbjct: 1144 VPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNKHRLKHLLDNI-SSFNV 1221          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2ML98_TANCI (Retrotransposon protein, putative, unclassified n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2ML98_TANCI)

HSP 1 Score: 66.2 bits (160), Expect = 8.050e-11
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKLWGLREI 267
            +P++ D TS + +S N +  L  KH+A+R+ F++E V+   +G+Y VKTDYQLAD+  K  S  R  YL + +    DM+     E+
Sbjct:  216 IPIYCDSTSAIAISCNTDRHLRTKHIAVRYHFIKEHVENGTIGLYFVKTDYQLADLFIKALSVDRFNYLARRL----DMRSLSQHEL 298          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2K8U2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K8U2_TANCI)

HSP 1 Score: 63.9 bits (154), Expect = 7.880e-10
Identity = 29/88 (32.95%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    4 SVPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKLWGLREI 267
            ++P++ D  S + +S N       KH+A+R+ F++E V++  + +Y VKTDYQLADI+TK     R  YL++ +V + +     ++++
Sbjct: 1487 NIPIYCDSKSAIAISCNPVQHSRTKHIAVRYHFIKEQVEKGMIELYFVKTDYQLADILTKALPADRFNYLVRCLVMNGNPSRVNIKQL 1574          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2P1J0_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P1J0_TANCI)

HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9
Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
            +P++ D  S + +S N    L  KH+ +R+ F++E V++  + +Y VKTDYQLADIVTKV    R  YL+
Sbjct:  824 IPIYCDSKSAIAISCNPVQHLRTKHITVRYHFIKEHVEKGTIELYFVKTDYQLADIVTKVLPADRFNYLV 893          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699HAT7_TANCI (Retrotransposon protein, putative, unclassified n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HAT7_TANCI)

HSP 1 Score: 62.0 bits (149), Expect = 3.580e-9
Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLK 219
            +PL+ D  ST+ +S N      +KH+ + + F++E VK + V +Y VKTD QLADI+TK  +R+R+ +L+K
Sbjct:  526 IPLYSDSQSTIALSCNSVQHSKMKHIIVWYHFIKEQVKNKVVELYFVKTDNQLADILTKALTRERYEFLIK 596          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699IQY5_TANCI (Retrotransposon protein, putative, unclassified (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IQY5_TANCI)

HSP 1 Score: 61.6 bits (148), Expect = 4.120e-9
Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKL 249
            +PL+ D  S + +  N       KH+ +RH F++E V++  V +Y V TDYQLADI TKV  R+R  +LL  + +  D+ +
Sbjct:    8 IPLYCDNRSAIALCCNNVQHSRSKHIDIRHHFIREQVEKGMVELYFVTTDYQLADIFTKVLPRERFEFLLSRLDTKVDVNV 88          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2LXQ4_TANCI (CCHC-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LXQ4_TANCI)

HSP 1 Score: 60.8 bits (146), Expect = 9.540e-9
Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
            +P++ D  S + +S N       KH+A+R+ F++E V++  + +YSVKTDYQLAD+ TK     R  YL+
Sbjct: 1712 IPIYYDSKSAIAISCNPVQHSRTKHIAVRYYFIKEHVEKSTIELYSVKTDYQLADLFTKSLPADRFNYLV 1781          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699HZH9_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZH9_TANCI)

HSP 1 Score: 57.0 bits (136), Expect = 1.640e-8
Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
            +PL+ D  S + +  N       KH+ +R+ F++E VK   V +Y V+T+YQLADI TK+  R+R  +L+
Sbjct:   15 IPLYCDNKSAIALCCNNVQHSRAKHIDVRYHFIKEQVKNETVELYFVRTEYQLADIFTKLLPRERFNFLI 84          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699GZ37_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GZ37_TANCI)

HSP 1 Score: 59.7 bits (143), Expect = 2.410e-8
Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLI 225
            +PL+ D  S + +S N       KH+  R+ F++E V+   +G+Y V+T+YQLAD+ TK   + R +YL++ I
Sbjct: 1201 IPLYCDSQSAIEISCNPVQHSRTKHIYTRYHFIKEQVENGIIGLYFVRTEYQLADMFTKALPKDRFKYLIRRI 1273          
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2MA50_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MA50_TANCI)

HSP 1 Score: 59.3 bits (142), Expect = 3.310e-8
Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query:    7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
            +P++ D  S + +S N  +    KH+ +R+ F++E V++  + +Y VKTDYQLADI+TK  +  R  YL+
Sbjct:  956 IPIYCDSKSAIAISCNPVHHSRTKHIVVRYHFIKEHVEKGTIELYFVKTDYQLADILTKALTIDRFNYLV 1025          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL30_9PHAE7.250e-1245.57Integrase catalytic domain-containing protein n=1 ... [more]
A0A6L2ML98_TANCI8.050e-1137.93Retrotransposon protein, putative, unclassified n=... [more]
A0A6L2K8U2_TANCI7.880e-1032.95Retrovirus-related Pol polyprotein from transposon... [more]
A0A6L2P1J0_TANCI1.440e-942.86Retrovirus-related Pol polyprotein from transposon... [more]
A0A699HAT7_TANCI3.580e-942.25Retrotransposon protein, putative, unclassified n=... [more]
A0A699IQY5_TANCI4.120e-938.27Retrotransposon protein, putative, unclassified (F... [more]
A0A6L2LXQ4_TANCI9.540e-940.00CCHC-type domain-containing protein n=1 Tax=Tanace... [more]
A0A699HZH9_TANCI1.640e-838.57Retrovirus-related Pol polyprotein from transposon... [more]
A0A699GZ37_TANCI2.410e-836.99Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6L2MA50_TANCI3.310e-838.57Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig814contigS-dermatodea_contig814:3834..4112 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size279
Cds size279
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925323.7563667-CDS-S-dermatodea_contig814:3833..41121622925323.7563667-CDS-S-dermatodea_contig814:3833..4112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig814 3834..4112 -
1694079855.3717043-CDS-S-dermatodea_contig814:3833..41121694079855.3717043-CDS-S-dermatodea_contig814:3833..4112Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig814 3834..4112 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig814.16336.1prot_S-dermatodea_contig814.16336.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig814 3834..4112 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig814.16336.1

>prot_S-dermatodea_contig814.16336.1 ID=prot_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp
GSVPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVK
TDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKLWGLREISCS*
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mRNA from alignment at S-dermatodea_contig814:3834..4112-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig814.16336.1 ID=mRNA_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at S-dermatodea_contig814:3834..4112- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAGCGTACCACTACACATCGATATCACCTCCACTCTGCACGTCTCCGG AAACCAAAATTACAGCTTGGGAGTGAAGCACGTCGCTTTGAGGCACCTCT TCGTCCAGGAGCTTGTCAAGGAGAGAAGAGTCGGTATCTACTCTGTGAAG ACAGATTATCAACTTGCCGACATCGTCACCAAGGTTCGCAGCCGGCAGAG GCACCGCTACCTTCTCAAGCTAATCGTTTCAAGCTTTGATATGAAACTCT GGGGTCTGCGGGAAATCAGCTGTAGTTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig814:3834..4112-

>mRNA_S-dermatodea_contig814.16336.1 ID=mRNA_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig814:3834..4112- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGCAGCGTACCACTACACATCGATATCACCTCCACTCTGCACGTCTCCGG
AAACCAAAATTACAGCTTGGGAGTGAAGCACGTCGCTTTGAGGCACCTCT
TCGTCCAGGAGCTTGTCAAGGAGAGAAGAGTCGGTATCTACTCTGTGAAG
ACAGATTATCAACTTGCCGACATCGTCACCAAGGTTCGCAGCCGGCAGAG
GCACCGCTACCTTCTCAAGCTAATCGTTTCAAGCTTTGATATGAAACTCT
GGGGTCTGCGGGAAATCAGCTGTAGTTGAGGCAGCGTACCACTACACATC
GATATCACCTCCACTCTGCACGTCTCCGGAAACCAAAATTACAGCTTGGG
AGTGAAGCACGTCGCTTTGAGGCACCTCTTCGTCCAGGAGCTTGTCAAGG
AGAGAAGAGTCGGTATCTACTCTGTGAAGACAGATTATCAACTTGCCGAC
ATCGTCACCAAGGTTCGCAGCCGGCAGAGGCACCGCTACCTTCTCAAGCT
AATCGTTTCAAGCTTTGATATGAAACTCTGGGGTCTGCGGGAAATCAGCT
GTAGTTGA
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