mRNA_S-dermatodea_contig814.16336.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE) HSP 1 Score: 69.7 bits (169), Expect = 7.250e-12 Identity = 36/79 (45.57%), Postives = 55/79 (69.62%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDM 243
VPL+ D T+TLH GN+++S K +ALR L+++ELV E R+ I+ + TD +ADI TK ++ R ++LL I SSF++
Sbjct: 1144 VPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNKHRLKHLLDNI-SSFNV 1221
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2ML98_TANCI (Retrotransposon protein, putative, unclassified n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2ML98_TANCI) HSP 1 Score: 66.2 bits (160), Expect = 8.050e-11 Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKLWGLREI 267
+P++ D TS + +S N + L KH+A+R+ F++E V+ +G+Y VKTDYQLAD+ K S R YL + + DM+ E+
Sbjct: 216 IPIYCDSTSAIAISCNTDRHLRTKHIAVRYHFIKEHVENGTIGLYFVKTDYQLADLFIKALSVDRFNYLARRL----DMRSLSQHEL 298
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2K8U2_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2K8U2_TANCI) HSP 1 Score: 63.9 bits (154), Expect = 7.880e-10 Identity = 29/88 (32.95%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 4 SVPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKLWGLREI 267
++P++ D S + +S N KH+A+R+ F++E V++ + +Y VKTDYQLADI+TK R YL++ +V + + ++++
Sbjct: 1487 NIPIYCDSKSAIAISCNPVQHSRTKHIAVRYHFIKEQVEKGMIELYFVKTDYQLADILTKALPADRFNYLVRCLVMNGNPSRVNIKQL 1574
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2P1J0_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2P1J0_TANCI) HSP 1 Score: 63.2 bits (152), Expect = 1.440e-9 Identity = 30/70 (42.86%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
+P++ D S + +S N L KH+ +R+ F++E V++ + +Y VKTDYQLADIVTKV R YL+
Sbjct: 824 IPIYCDSKSAIAISCNPVQHLRTKHITVRYHFIKEHVEKGTIELYFVKTDYQLADIVTKVLPADRFNYLV 893
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699HAT7_TANCI (Retrotransposon protein, putative, unclassified n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HAT7_TANCI) HSP 1 Score: 62.0 bits (149), Expect = 3.580e-9 Identity = 30/71 (42.25%), Postives = 48/71 (67.61%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLK 219
+PL+ D ST+ +S N +KH+ + + F++E VK + V +Y VKTD QLADI+TK +R+R+ +L+K
Sbjct: 526 IPLYSDSQSTIALSCNSVQHSKMKHIIVWYHFIKEQVKNKVVELYFVKTDNQLADILTKALTRERYEFLIK 596
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699IQY5_TANCI (Retrotransposon protein, putative, unclassified (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699IQY5_TANCI) HSP 1 Score: 61.6 bits (148), Expect = 4.120e-9 Identity = 31/81 (38.27%), Postives = 48/81 (59.26%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLIVSSFDMKL 249
+PL+ D S + + N KH+ +RH F++E V++ V +Y V TDYQLADI TKV R+R +LL + + D+ +
Sbjct: 8 IPLYCDNRSAIALCCNNVQHSRSKHIDIRHHFIREQVEKGMVELYFVTTDYQLADIFTKVLPRERFEFLLSRLDTKVDVNV 88
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2LXQ4_TANCI (CCHC-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2LXQ4_TANCI) HSP 1 Score: 60.8 bits (146), Expect = 9.540e-9 Identity = 28/70 (40.00%), Postives = 44/70 (62.86%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
+P++ D S + +S N KH+A+R+ F++E V++ + +YSVKTDYQLAD+ TK R YL+
Sbjct: 1712 IPIYYDSKSAIAISCNPVQHSRTKHIAVRYYFIKEHVEKSTIELYSVKTDYQLADLFTKSLPADRFNYLV 1781
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699HZH9_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699HZH9_TANCI) HSP 1 Score: 57.0 bits (136), Expect = 1.640e-8 Identity = 27/70 (38.57%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
+PL+ D S + + N KH+ +R+ F++E VK V +Y V+T+YQLADI TK+ R+R +L+
Sbjct: 15 IPLYCDNKSAIALCCNNVQHSRAKHIDVRYHFIKEQVKNETVELYFVRTEYQLADIFTKLLPRERFNFLI 84
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A699GZ37_TANCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699GZ37_TANCI) HSP 1 Score: 59.7 bits (143), Expect = 2.410e-8 Identity = 27/73 (36.99%), Postives = 45/73 (61.64%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLLKLI 225
+PL+ D S + +S N KH+ R+ F++E V+ +G+Y V+T+YQLAD+ TK + R +YL++ I
Sbjct: 1201 IPLYCDSQSAIEISCNPVQHSRTKHIYTRYHFIKEQVENGIIGLYFVRTEYQLADMFTKALPKDRFKYLIRRI 1273
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Match: A0A6L2MA50_TANCI (Integrase catalytic domain-containing protein n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A6L2MA50_TANCI) HSP 1 Score: 59.3 bits (142), Expect = 3.310e-8 Identity = 27/70 (38.57%), Postives = 45/70 (64.29%), Query Frame = 1
Query: 7 VPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKTDYQLADIVTKVRSRQRHRYLL 216
+P++ D S + +S N + KH+ +R+ F++E V++ + +Y VKTDYQLADI+TK + R YL+
Sbjct: 956 IPIYCDSKSAIAISCNPVHHSRTKHIVVRYHFIKEHVEKGTIELYFVKTDYQLADILTKALTIDRFNYLV 1025 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig814.16336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig814.16336.1 >prot_S-dermatodea_contig814.16336.1 ID=prot_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=93bp GSVPLHIDITSTLHVSGNQNYSLGVKHVALRHLFVQELVKERRVGIYSVKback to top mRNA from alignment at S-dermatodea_contig814:3834..4112- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig814.16336.1 ID=mRNA_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=279bp|location=Sequence derived from alignment at S-dermatodea_contig814:3834..4112- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig814:3834..4112- >mRNA_S-dermatodea_contig814.16336.1 ID=mRNA_S-dermatodea_contig814.16336.1|Name=mRNA_S-dermatodea_contig814.16336.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=558bp|location=Sequence derived from alignment at S-dermatodea_contig814:3834..4112- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |