mRNA_S-dermatodea_contig8110.16307.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8110.16307.1
Unique NamemRNA_S-dermatodea_contig8110.16307.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A6H5L9L5_9PHAE (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9L5_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.960e-54
Identity = 88/100 (88.00%), Postives = 94/100 (94.00%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAAR 300
            RASSSGAT+PFAV+DFLFREDLYSLGYVFLELVFGAFC  KS+RPDQN+LKRLLEDIFKGDFKAFKDYCLT P WE A+EVLDADRGSGWGLAT+LL AR
Sbjct:  316 RASSSGATSPFAVSDFLFREDLYSLGYVFLELVFGAFCDDKSKRPDQNSLKRLLEDIFKGDFKAFKDYCLTEPAWEPAVEVLDADRGSGWGLATALLQAR 415          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A2V3IFG9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFG9_9FLOR)

HSP 1 Score: 90.9 bits (224), Expect = 3.320e-21
Identity = 45/100 (45.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAAR 300
            RA  +GA TP  +  F F ED+Y+LGY FLEL+F +F         Q+  K+L ED FK D  AF++YC   PEW  A+E LD+    GW L   +L AR
Sbjct:   37 RARKAGAVTPATIAAFHFAEDIYALGYSFLELIFSSF---SGVPVPQDRFKKLFEDTFKLDVNAFREYCKQDPEWSSAVEFLDSQSQGGWELMKCMLRAR 133          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: R7Q3P8_CHOCR (Protein kinase domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q3P8_CHOCR)

HSP 1 Score: 82.8 bits (203), Expect = 1.830e-16
Identity = 38/100 (38.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAAR 300
            +A  +GA TP  +  F   +D+Y+LGY FLE++F ++     +   Q+  K L ED F+ D   F+ YC   PEW +A+ +LD D G+GW L  ++L +R
Sbjct:  302 KARKAGAVTPGEIASFYNADDIYALGYAFLEVIFSSY---GGKPVTQDRFKVLFEDTFELDVSNFRQYCAEDPEWTEAVSLLDKDDGAGWDLLKTMLGSR 398          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A7S3ECV9_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3ECV9_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 7.290e-14
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVS-KSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAA 297
            +A  SGA++P  V+ + F +D+Y+LGY F+E++FG+   S    +  Q A KRL ED+++ +    ++Y      + +A++ LD D  +GW L +++L++
Sbjct:  282 KARESGASSPTEVSRYFFADDIYALGYAFMEIIFGSLSESGPGPQTTQEAFKRLFEDVYERNVANLREYISADENYSEAVQFLDQDSFAGWNLISAMLSS 381          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: UPI0009010F03 (uncharacterized protein LOC104705975 isoform X1 n=6 Tax=Camelina sativa TaxID=90675 RepID=UPI0009010F03)

HSP 1 Score: 66.6 bits (161), Expect = 1.040e-10
Identity = 37/99 (37.37%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAA 297
            RA++SGA T F    F   +D+Y  G +F  L F  FC  ++   D  +L+RLLE+ F+ D +A ++YCL     E+A++ LD    +GW L  ++L A
Sbjct:  307 RATASGAFTVFEKRAFGIADDIYEAGLLFAYLAFVPFC--EAGVMDSLSLQRLLENTFRLDMEAVREYCLADERLEEAVKFLDLGDRAGWELLQAMLNA 403          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A178UAA2_ARATH (Protein kinase domain-containing protein n=15 Tax=Brassicaceae TaxID=3700 RepID=A0A178UAA2_ARATH)

HSP 1 Score: 65.9 bits (159), Expect = 1.990e-10
Identity = 36/99 (36.36%), Postives = 57/99 (57.58%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAA 297
            RA+++GA T F    F   +D+Y  G +F  L F  FC  ++   D  +L+RLLE+ F+ D +A ++YCL     E+A++ LD    +GW L  ++L A
Sbjct:  351 RANAAGAYTVFEKRAFGIADDIYEAGLLFAYLAFVPFC--EAGVTDSLSLQRLLENTFRLDIEAVREYCLADERLEEAVKFLDLGDRAGWELLQAMLNA 447          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A0K9PE06_ZOSMR (Protein kinase domain-containing protein n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9PE06_ZOSMR)

HSP 1 Score: 65.5 bits (158), Expect = 2.690e-10
Identity = 35/97 (36.08%), Postives = 54/97 (55.67%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLL 291
            RA ++GA T      F F +D+Y  G +   L F  FC + S   D  +++RLLE+ FK D +A ++YCL      +A+  LD+  G+GW L  ++L
Sbjct:  320 RAKAAGAFTVLEKRSFAFADDIYEAGLLIAYLSFVPFCEAGSM--DGLSIQRLLENTFKLDLEAAREYCLADDRLVEAVNFLDSGDGAGWQLLQAML 414          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: UPI00053C0DA2 (uncharacterized protein LOC104820893 isoform X1 n=3 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C0DA2)

HSP 1 Score: 65.5 bits (158), Expect = 2.690e-10
Identity = 38/99 (38.38%), Postives = 54/99 (54.55%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAA 297
            RASSSGA +      F   +D+Y  G +F  L F  FC  +    D  +L+RLLE+ F+ D  A ++YCL     E+A+  LD   G+GW L  ++L A
Sbjct:  325 RASSSGAFSILEKRAFGIADDIYEAGLLFAYLAFIPFC--EVGVMDSLSLQRLLENTFRLDLDAVREYCLADERLEEAVRFLDIGDGAGWDLLQAMLNA 421          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A1E7FEK6_9STRA (Protein kinase domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEK6_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.770e-10
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:   25 TPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRP----------DQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAAR 300
            T   +T+F   EDL++LG+VFL    G   VS +  P          D++ +++LL +IFK DF+AF++Y      WE+ + +LD   G+GW +  +L  AR
Sbjct:  428 TSLTMTNFAMAEDLHALGFVFL----GLLLVSLADLPENANAPMPNTDEDTIQKLLNEIFKLDFQAFREYVEAEEVWEKLVLLLDEKDGAGWTVLETLFKAR 525          
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Match: A0A453PBB5_AEGTS (Protein kinase domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453PBB5_AEGTS)

HSP 1 Score: 64.7 bits (156), Expect = 2.810e-10
Identity = 35/97 (36.08%), Postives = 55/97 (56.70%), Query Frame = 1
Query:    1 RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNALKRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLL 291
            RAS++GA+TP     F   +D+Y  G +   + F  FC  K+   D  +L+RLLE+ F+ D  A ++YCL   +  +A+  LD   G+GW L  ++L
Sbjct:  145 RASAAGASTPLEKRAFGVADDIYGAGLLIAYMAFIPFC--KAGIMDGISLQRLLENTFRLDIYAAREYCLEDDKLSEAVNFLDLGDGAGWELLQAML 239          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8110.16307.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L9L5_9PHAE4.960e-5488.00Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A2V3IFG9_9FLOR3.320e-2145.00Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7Q3P8_CHOCR1.830e-1638.00Protein kinase domain-containing protein n=1 Tax=C... [more]
A0A7S3ECV9_9RHOD7.290e-1433.00Hypothetical protein n=2 Tax=Rhodosorus marinus Ta... [more]
UPI0009010F031.040e-1037.37uncharacterized protein LOC104705975 isoform X1 n=... [more]
A0A178UAA2_ARATH1.990e-1036.36Protein kinase domain-containing protein n=15 Tax=... [more]
A0A0K9PE06_ZOSMR2.690e-1036.08Protein kinase domain-containing protein n=1 Tax=Z... [more]
UPI00053C0DA22.690e-1038.38uncharacterized protein LOC104820893 isoform X1 n=... [more]
A0A1E7FEK6_9STRA2.770e-1035.29Protein kinase domain-containing protein n=1 Tax=F... [more]
A0A453PBB5_AEGTS2.810e-1036.08Protein kinase domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8110contigS-dermatodea_contig8110:1557..1856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score180.6
Seed ortholog evalue3.5e-43
Seed eggNOG ortholog2880.D8LSY5
EggNOG OGs28J07@1,2QRC4@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein kinase domain
Ec32 orthologEc-26_001880.1
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925321.6563542-CDS-S-dermatodea_contig8110:1556..18561622925321.6563542-CDS-S-dermatodea_contig8110:1556..1856Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8110 1557..1856 +
1694079853.937358-CDS-S-dermatodea_contig8110:1556..18561694079853.937358-CDS-S-dermatodea_contig8110:1556..1856Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8110 1557..1856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8110.16307.1prot_S-dermatodea_contig8110.16307.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8110 1557..1856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8110.16307.1

>prot_S-dermatodea_contig8110.16307.1 ID=prot_S-dermatodea_contig8110.16307.1|Name=mRNA_S-dermatodea_contig8110.16307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=100bp
RASSSGATTPFAVTDFLFREDLYSLGYVFLELVFGAFCVSKSQRPDQNAL
KRLLEDIFKGDFKAFKDYCLTIPEWEQAIEVLDADRGSGWGLATSLLAAR
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mRNA from alignment at S-dermatodea_contig8110:1557..1856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8110.16307.1 ID=mRNA_S-dermatodea_contig8110.16307.1|Name=mRNA_S-dermatodea_contig8110.16307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at S-dermatodea_contig8110:1557..1856+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGAGCTCCTCGGGCGCGACCACGCCGTTCGCAGTGACCGACTTCCT CTTCCGAGAGGACCTGTACTCCCTCGGCTACGTCTTCCTCGAGCTGGTGT TCGGGGCGTTCTGCGTGTCGAAGTCCCAGCGGCCGGACCAAAACGCCCTC AAGCGCCTGTTGGAGGACATCTTCAAAGGGGACTTCAAGGCCTTCAAGGA CTACTGCCTCACGATACCGGAGTGGGAGCAGGCCATCGAAGTGCTGGACG CGGATCGCGGCAGCGGGTGGGGGCTGGCGACGTCTCTGCTCGCAGCGAGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8110:1557..1856+

>mRNA_S-dermatodea_contig8110.16307.1 ID=mRNA_S-dermatodea_contig8110.16307.1|Name=mRNA_S-dermatodea_contig8110.16307.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at S-dermatodea_contig8110:1557..1856+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGGCGAGCTCCTCGGGCGCGACCACGCCGTTCGCAGTGACCGACTTCCT
CTTCCGAGAGGACCTGTACTCCCTCGGCTACGTCTTCCTCGAGCTGGTGT
TCGGGGCGTTCTGCGTGTCGAAGTCCCAGCGGCCGGACCAAAACGCCCTC
AAGCGCCTGTTGGAGGACATCTTCAAAGGGGACTTCAAGGCCTTCAAGGA
CTACTGCCTCACGATACCGGAGTGGGAGCAGGCCATCGAAGTGCTGGACG
CGGATCGCGGCAGCGGGTGGGGGCTGGCGACGTCTCTGCTCGCAGCGAGG
AGGGCGAGCTCCTCGGGCGCGACCACGCCGTTCGCAGTGACCGACTTCCT
CTTCCGAGAGGACCTGTACTCCCTCGGCTACGTCTTCCTCGAGCTGGTGT
TCGGGGCGTTCTGCGTGTCGAAGTCCCAGCGGCCGGACCAAAACGCCCTC
AAGCGCCTGTTGGAGGACATCTTCAAAGGGGACTTCAAGGCCTTCAAGGA
CTACTGCCTCACGATACCGGAGTGGGAGCAGGCCATCGAAGTGCTGGACG
CGGATCGCGGCAGCGGGTGGGGGCTGGCGACGTCTCTGCTCGCAGCGAGG
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