prot_S-dermatodea_contig81008.16296.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig81008.16296.1
Unique Nameprot_S-dermatodea_contig81008.16296.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length55
Homology
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.260e-25
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            DYRLFVGDLGNEVTDD+L GAFRKY SF+KAKV+REKWNKKSKGYGFVSFLDG
Sbjct:  432 DYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDG 484          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.020e-25
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            DYRLFVGDLGNEVTDD+L GAFRKY SF+KAK++REKWNKKSKGYGFVSFLDG
Sbjct:  413 DYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDG 465          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A836C6T9_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C6T9_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 8.600e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            DYR+FVGDLGNEVTDD LG +F KY SF+KAK+VR++  KKSKGYGFVSFLDG
Sbjct:  229 DYRIFVGDLGNEVTDDLLGKSFNKYPSFAKAKIVRDQRTKKSKGYGFVSFLDG 281          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.210e-19
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            D+RLFVGDLGNEVTD++L  AF  YASF KAKVVREK N KSKGYGFVSF DG
Sbjct:  257 DFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADG 309          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: C1N4X5_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N4X5_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 7.710e-19
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLD 53
            DYR+FVGDLG EV+DDHL  AF KYASF KA+VV++K  +KS+G+GFVSF+D
Sbjct:   24 DYRIFVGDLGTEVSDDHLARAFGKYASFQKARVVKDKTTQKSRGFGFVSFMD 75          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A8J4AQM4_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AQM4_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 7.860e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            D+R+FVGDLGNEVTDD L  +F KY+SF+KAKVVR++  KKSKGYGFVSFLDG
Sbjct:  188 DFRIFVGDLGNEVTDDLLAKSFSKYSSFTKAKVVRDQRTKKSKGYGFVSFLDG 240          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLD 53
            D+RLFVGD+GNEVTDD L  AF KYASF+KAKVVR+K+  KSKGYGF SF+D
Sbjct:  195 DFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFID 246          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A8J4D292_9CHLO (RRM domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D292_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 2.200e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            D+R+FVGDLGNEVTDD L  +F KY+SF++AKVVR++  KKSKGYGFVSFLDG
Sbjct:  190 DFRIFVGDLGNEVTDDLLAKSFSKYSSFARAKVVRDQRTKKSKGYGFVSFLDG 242          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: D8TJ50_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ50_VOLCA)

HSP 1 Score: 84.3 bits (207), Expect = 3.000e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 0
Query:    2 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 54
            D+R+FVGD+GNEVTDD L  +F KY+SF+KAKVVR+   KKSKGYGFVSFLDG
Sbjct:  188 DFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTKKSKGYGFVSFLDG 240          
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A6U6JT11_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6JT11_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 3.860e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 0
Query:    1 DDYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSF 51
            DDYRLF GDLGNEVTDD L  AFRKY+SF KAKV+R+K   K+KGYGFVSF
Sbjct:   75 DDYRLFCGDLGNEVTDDLLANAFRKYSSFQKAKVIRDKRTGKTKGYGFVSF 125          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAJ6_9PHAE2.260e-2590.57RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJT5_ECTSI3.020e-2588.68Temporarily Assigned Gene name family member (Tag-... [more]
A0A836C6T9_9CHLO8.600e-2077.36RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A836CHC6_9STRA3.210e-1979.25RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
C1N4X5_MICPC7.710e-1969.23Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A8J4AQM4_9CHLO7.860e-1975.47RRM domain-containing protein n=1 Tax=Volvox afric... [more]
A0A7S2RJZ2_9STRA1.700e-1875.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4D292_9CHLO2.200e-1873.58RRM domain-containing protein n=2 Tax=Volvox retic... [more]
D8TJ50_VOLCA3.000e-1873.58RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A0A6U6JT11_9DINO3.860e-1876.47Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 5..52
e-value: 1.2E-10
score: 41.1
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 3..54
score: 11.725
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 2..54
e-value: 3.8E-13
score: 51.3
NoneNo IPR availablePANTHERPTHR13952:SF8RRM-CONTAINING PROTEIN-RELATEDcoord: 2..54
NoneNo IPR availablePANTHERPTHR13952U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KDcoord: 2..54
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 2..53

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81008contigS-dermatodea_contig81008:466..630 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81008.16296.1mRNA_S-dermatodea_contig81008.16296.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig81008 466..630 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig81008.16296.1 ID=prot_S-dermatodea_contig81008.16296.1|Name=mRNA_S-dermatodea_contig81008.16296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
DDYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVS
FLDG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf