mRNA_S-dermatodea_contig81008.16296.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81008.16296.1
Unique NamemRNA_S-dermatodea_contig81008.16296.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A6H5KAJ6_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAJ6_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.260e-25
Identity = 48/53 (90.57%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            DYRLFVGDLGNEVTDD+L GAFRKY SF+KAKV+REKWNKKSKGYGFVSFLDG
Sbjct:  432 DYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKVIREKWNKKSKGYGFVSFLDG 484
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: D8LJT5_ECTSI (Temporarily Assigned Gene name family member (Tag-262) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJT5_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 3.020e-25
Identity = 47/53 (88.68%), Postives = 51/53 (96.23%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            DYRLFVGDLGNEVTDD+L GAFRKY SF+KAK++REKWNKKSKGYGFVSFLDG
Sbjct:  413 DYRLFVGDLGNEVTDDNLAGAFRKYTSFAKAKIIREKWNKKSKGYGFVSFLDG 465
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A836C6T9_9CHLO (RRM domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A836C6T9_9CHLO)

HSP 1 Score: 89.0 bits (219), Expect = 8.600e-20
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            DYR+FVGDLGNEVTDD LG +F KY SF+KAK+VR++  KKSKGYGFVSFLDG
Sbjct:  229 DYRIFVGDLGNEVTDDLLGKSFNKYPSFAKAKIVRDQRTKKSKGYGFVSFLDG 281
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A836CHC6_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 3.210e-19
Identity = 42/53 (79.25%), Postives = 45/53 (84.91%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            D+RLFVGDLGNEVTD++L  AF  YASF KAKVVREK N KSKGYGFVSF DG
Sbjct:  257 DFRLFVGDLGNEVTDENLAEAFSAYASFQKAKVVREKHNNKSKGYGFVSFADG 309
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: C1N4X5_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N4X5_MICPC)

HSP 1 Score: 81.6 bits (200), Expect = 7.710e-19
Identity = 36/52 (69.23%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLD 159
            DYR+FVGDLG EV+DDHL  AF KYASF KA+VV++K  +KS+G+GFVSF+D
Sbjct:   24 DYRIFVGDLGTEVSDDHLARAFGKYASFQKARVVKDKTTQKSRGFGFVSFMD 75
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A8J4AQM4_9CHLO (RRM domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4AQM4_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 7.860e-19
Identity = 40/53 (75.47%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            D+R+FVGDLGNEVTDD L  +F KY+SF+KAKVVR++  KKSKGYGFVSFLDG
Sbjct:  188 DFRIFVGDLGNEVTDDLLAKSFSKYSSFTKAKVVRDQRTKKSKGYGFVSFLDG 240
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A7S2RJZ2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RJZ2_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.700e-18
Identity = 39/52 (75.00%), Postives = 45/52 (86.54%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLD 159
            D+RLFVGD+GNEVTDD L  AF KYASF+KAKVVR+K+  KSKGYGF SF+D
Sbjct:  195 DFRLFVGDIGNEVTDDLLSRAFAKYASFAKAKVVRDKYTNKSKGYGFASFID 246
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A8J4D292_9CHLO (RRM domain-containing protein n=2 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4D292_9CHLO)

HSP 1 Score: 84.7 bits (208), Expect = 2.200e-18
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            D+R+FVGDLGNEVTDD L  +F KY+SF++AKVVR++  KKSKGYGFVSFLDG
Sbjct:  190 DFRIFVGDLGNEVTDDLLAKSFSKYSSFARAKVVRDQRTKKSKGYGFVSFLDG 242
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: D8TJ50_VOLCA (RRM domain-containing protein n=1 Tax=Volvox carteri f. nagariensis TaxID=3068 RepID=D8TJ50_VOLCA)

HSP 1 Score: 84.3 bits (207), Expect = 3.000e-18
Identity = 39/53 (73.58%), Postives = 46/53 (86.79%), Query Frame = 1 
Query:    4 DYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSFLDG 162
            D+R+FVGD+GNEVTDD L  +F KY+SF+KAKVVR+   KKSKGYGFVSFLDG
Sbjct:  188 DFRIFVGDIGNEVTDDLLAKSFSKYSSFAKAKVVRDPRTKKSKGYGFVSFLDG 240
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BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Match: A0A6U6JT11_9DINO (Hypothetical protein n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A6U6JT11_9DINO)

HSP 1 Score: 82.8 bits (203), Expect = 3.860e-18
Identity = 39/51 (76.47%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:    1 DDYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVSF 153
            DDYRLF GDLGNEVTDD L  AFRKY+SF KAKV+R+K   K+KGYGFVSF
Sbjct:   75 DDYRLFCGDLGNEVTDDLLANAFRKYSSFQKAKVIRDKRTGKTKGYGFVSF 125
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81008.16296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KAJ6_9PHAE2.260e-2590.57RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJT5_ECTSI3.020e-2588.68Temporarily Assigned Gene name family member (Tag-... [more]
A0A836C6T9_9CHLO8.600e-2077.36RRM domain-containing protein n=1 Tax=Edaphochlamy... [more]
A0A836CHC6_9STRA3.210e-1979.25RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
C1N4X5_MICPC7.710e-1969.23Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]
A0A8J4AQM4_9CHLO7.860e-1975.47RRM domain-containing protein n=1 Tax=Volvox afric... [more]
A0A7S2RJZ2_9STRA1.700e-1875.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A8J4D292_9CHLO2.200e-1873.58RRM domain-containing protein n=2 Tax=Volvox retic... [more]
D8TJ50_VOLCA3.000e-1873.58RRM domain-containing protein n=1 Tax=Volvox carte... [more]
A0A6U6JT11_9DINO3.860e-1876.47Hypothetical protein n=1 Tax=Brandtodinium nutricu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81008contigS-dermatodea_contig81008:466..630 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score107.5
Seed ortholog evalue2.1e-21
Seed eggNOG ortholog2880.D8LJT5
Preferred nameRBM42
GOsGO:0000075,GO:0000077,GO:0000278,GO:0000375,GO:0000377,GO:0000398,GO:0001654,GO:0002088,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006977,GO:0006978,GO:0007049,GO:0007050,GO:0007093,GO:0007154,GO:0007165,GO:0007275,GO:0007346,GO:0007423,GO:0008150,GO:0008152,GO:0008285,GO:0008380,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009987,GO:0010467,GO:0010468,GO:0010564,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010948,GO:0016070,GO:0016071,GO:0019219,GO:0019222,GO:0022402,GO:0023052,GO:0030330,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031570,GO:0031571,GO:0032501,GO:0032502,GO:0033119,GO:0033554,GO:0034641,GO:0035556,GO:0042127,GO:0042770,GO:0042772,GO:0043010,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043484,GO:0043487,GO:0043488,GO:0043489,GO:0044237,GO:0044238,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0045786,GO:0045787,GO:0045930,GO:0045934,GO:0046483,GO:0048024,GO:0048025,GO:0048255,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048731,GO:0048856,GO:0050684,GO:0050686,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051252,GO:0051253,GO:0051716,GO:0051726,GO:0060255,GO:0061013,GO:0065007,GO:0065008,GO:0070935,GO:0071156,GO:0071158,GO:0071704,GO:0072331,GO:0072395,GO:0072401,GO:0072413,GO:0072422,GO:0072431,GO:0080090,GO:0090068,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902369,GO:1902373,GO:1902400,GO:1902402,GO:1902403,GO:1902806,GO:1902807,GO:1903047,GO:1903311,GO:1903312,GO:2000045,GO:2000134
EggNOG free text desc.RNA binding
EggNOG OGsKOG0226@1,KOG0226@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size165
Cds size165
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.7870295-CDS-S-dermatodea_contig81008:465..6301622925320.7870295-CDS-S-dermatodea_contig81008:465..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81008 466..630 +
1694079853.3176727-CDS-S-dermatodea_contig81008:465..6301694079853.3176727-CDS-S-dermatodea_contig81008:465..630Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81008 466..630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81008.16296.1prot_S-dermatodea_contig81008.16296.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81008 466..630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81008.16296.1

>prot_S-dermatodea_contig81008.16296.1 ID=prot_S-dermatodea_contig81008.16296.1|Name=mRNA_S-dermatodea_contig81008.16296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=55bp
DDYRLFVGDLGNEVTDDHLGGAFRKYASFSKAKVVREKWNKKSKGYGFVS
FLDG*
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mRNA from alignment at S-dermatodea_contig81008:466..630+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81008.16296.1 ID=mRNA_S-dermatodea_contig81008.16296.1|Name=mRNA_S-dermatodea_contig81008.16296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at S-dermatodea_contig81008:466..630+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACTACCGCCTCTTTGTGGGAGACCTTGGAAACGAAGTTACCGATGA
CCACCTTGGTGGGGCGTTCCGCAAGTACGCCTCCTTCTCAAAGGCAAAGG
TGGTGAGGGAGAAGTGGAATAAGAAATCCAAGGGATACGGTTTCGTCAGC
TTCTTGGACGGGTGA
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Coding sequence (CDS) from alignment at S-dermatodea_contig81008:466..630+

>mRNA_S-dermatodea_contig81008.16296.1 ID=mRNA_S-dermatodea_contig81008.16296.1|Name=mRNA_S-dermatodea_contig81008.16296.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at S-dermatodea_contig81008:466..630+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GATGACTACCGCCTCTTTGTGGGAGACCTTGGAAACGAAGTTACCGATGA
CCACCTTGGTGGGGCGTTCCGCAAGTACGCCTCCTTCTCAAAGGCAAAGG
TGGTGAGGGAGAAGTGGAATAAGAAATCCAAGGGATACGGTTTCGTCAGC
TTCTTGGACGGGTGAGATGACTACCGCCTCTTTGTGGGAGACCTTGGAAA
CGAAGTTACCGATGACCACCTTGGTGGGGCGTTCCGCAAGTACGCCTCCT
TCTCAAAGGCAAAGGTGGTGAGGGAGAAGTGGAATAAGAAATCCAAGGGA
TACGGTTTCGTCAGCTTCTTGGACGGGTGA
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