mRNA_S-dermatodea_contig81002.16295.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig81002.16295.1
Unique NamemRNA_S-dermatodea_contig81002.16295.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig81002.16295.1 vs. uniprot
Match: A0A6H5KYX0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX0_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 3.780e-25
Identity = 77/142 (54.23%), Postives = 84/142 (59.15%), Query Frame = 1 
Query:    1 RPPPESARGRLKSCLSSRKRARAGTPSAAETVSS-------DTPDHT------GSTAESYGRLSPPAASDRALGRG-SDVQTPGAMVPGA------GRGSAGTLEMGMETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK 366
            RP PESARGRLKSCLSSRKRAR G    A + S         TPD T      GS A +    SP      A G G ++   PG   PG+      G G     +M +ETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK
Sbjct:  989 RPAPESARGRLKSCLSSRKRARGGPAGVASSSSGRSPSASLGTPDATNSAGTDGSLAMAGSSPSPSRGGGAAAGGGVAEGAPPGVKTPGSSWGVSCGGGRGPASDMVLETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK 1130
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BLAST of mRNA_S-dermatodea_contig81002.16295.1 vs. uniprot
Match: D7FTI0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 5.030e-25
Identity = 77/143 (53.85%), Postives = 82/143 (57.34%), Query Frame = 1 
Query:    4 PPPESARGRLKSCLSSRKRARAGTPSAAET------VSSDTPDHT------GSTAESYGRLSPPAASDRALGRGSDVQTP-GAMVPGAGRGSAGTL---------EMGMETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK 366
            P PESARGRLKSCLSSRKRAR G    A +       S  TPD T      GS A +    SP      A G G     P G   PG   G +G           +MG+ETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK
Sbjct:  953 PAPESARGRLKSCLSSRKRARGGPAGVASSSGRSPSASLGTPDLTNSAGTDGSLAMAGSSPSPSRGGGAAAGSGVIAGAPHGVKTPGPSSGVSGXXXXXXRGPASDMGLETPRRVMFGAPMAAEFNHLSPSNRLTPMPSRDAK 1095
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig81002.16295.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYX0_9PHAE3.780e-2554.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FTI0_ECTSI5.030e-2553.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig81002contigS-dermatodea_contig81002:175..540 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size366
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925320.7551262-CDS-S-dermatodea_contig81002:174..5401622925320.7551262-CDS-S-dermatodea_contig81002:174..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81002 175..540 +
1694079853.305954-CDS-S-dermatodea_contig81002:174..5401694079853.305954-CDS-S-dermatodea_contig81002:174..540Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig81002 175..540 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig81002.16295.1prot_S-dermatodea_contig81002.16295.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig81002 175..540 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig81002.16295.1

>prot_S-dermatodea_contig81002.16295.1 ID=prot_S-dermatodea_contig81002.16295.1|Name=mRNA_S-dermatodea_contig81002.16295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=122bp
RPPPESARGRLKSCLSSRKRARAGTPSAAETVSSDTPDHTGSTAESYGRL
SPPAASDRALGRGSDVQTPGAMVPGAGRGSAGTLEMGMETPRRVMFGAPM
AAEFNHLSPSNRLTPMPSRDAK
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mRNA from alignment at S-dermatodea_contig81002:175..540+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig81002.16295.1 ID=mRNA_S-dermatodea_contig81002.16295.1|Name=mRNA_S-dermatodea_contig81002.16295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=366bp|location=Sequence derived from alignment at S-dermatodea_contig81002:175..540+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCCGCCCCCGGAATCTGCCCGCGGCCGCCTTAAGAGCTGCCTCAGCTC
GAGGAAGCGCGCGCGTGCCGGCACCCCATCCGCGGCCGAGACGGTCTCGT
CCGACACGCCCGACCACACGGGCAGCACCGCCGAAAGCTATGGGCGATTG
TCGCCGCCGGCGGCTTCTGACAGGGCGTTGGGGCGTGGGTCGGACGTTCA
GACTCCTGGGGCGATGGTGCCGGGGGCAGGGCGGGGCTCAGCGGGGACGC
TGGAGATGGGGATGGAGACGCCTCGGCGGGTGATGTTCGGTGCTCCGATG
GCCGCGGAGTTTAACCACCTGAGCCCGTCGAACCGGCTCACGCCCATGCC
CAGCAGGGACGCTAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig81002:175..540+

>mRNA_S-dermatodea_contig81002.16295.1 ID=mRNA_S-dermatodea_contig81002.16295.1|Name=mRNA_S-dermatodea_contig81002.16295.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at S-dermatodea_contig81002:175..540+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGGCCGCCCCCGGAATCTGCCCGCGGCCGCCTTAAGAGCTGCCTCAGCTC
GAGGAAGCGCGCGCGTGCCGGCACCCCATCCGCGGCCGAGACGGTCTCGT
CCGACACGCCCGACCACACGGGCAGCACCGCCGAAAGCTATGGGCGATTG
TCGCCGCCGGCGGCTTCTGACAGGGCGTTGGGGCGTGGGTCGGACGTTCA
GACTCCTGGGGCGATGGTGCCGGGGGCAGGGCGGGGCTCAGCGGGGACGC
TGGAGATGGGGATGGAGACGCCTCGGCGGGTGATGTTCGGTGCTCCGATG
GCCGCGGAGTTTAACCACCTGAGCCCGTCGAACCGGCTCACGCCCATGCC
CAGCAGGGACGCTAAGAGGCCGCCCCCGGAATCTGCCCGCGGCCGCCTTA
AGAGCTGCCTCAGCTCGAGGAAGCGCGCGCGTGCCGGCACCCCATCCGCG
GCCGAGACGGTCTCGTCCGACACGCCCGACCACACGGGCAGCACCGCCGA
AAGCTATGGGCGATTGTCGCCGCCGGCGGCTTCTGACAGGGCGTTGGGGC
GTGGGTCGGACGTTCAGACTCCTGGGGCGATGGTGCCGGGGGCAGGGCGG
GGCTCAGCGGGGACGCTGGAGATGGGGATGGAGACGCCTCGGCGGGTGAT
GTTCGGTGCTCCGATGGCCGCGGAGTTTAACCACCTGAGCCCGTCGAACC
GGCTCACGCCCATGCCCAGCAGGGACGCTAAG
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