prot_S-dermatodea_contig807.16256.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig807.16256.1
Unique Nameprot_S-dermatodea_contig807.16256.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length203
Homology
BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: D8LTG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG9_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.010e-55
Identity = 104/173 (60.12%), Postives = 123/173 (71.10%), Query Frame = 0
Query:    1 DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTA-----------IAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATKKLLEEEKARAAA 162
            DS+  E  RRNK P+LP TGPLS  P+GDVSDG+D +F+   +PMTKNEE EPILPLGEVS+D +EV E+G ILSLVE DGTIV+QG  G+  L E  VL +             +   + EPLGRIHEIFGPCA+PHYTVRV+GAA  HQ+V RYQ A KKLL+ EK RA A
Sbjct:  170 DSEVIEAPRRNKDPHLPLTGPLSIRPIGDVSDGEDEEFMGAALPMTKNEELEPILPLGEVSLDGAEVQEVGKILSLVEADGTIVVQGKPGLV-LDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQVVVRYQVALKKLLQMEKERADA 341          
BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.820e-54
Identity = 103/171 (60.23%), Postives = 121/171 (70.76%), Query Frame = 0
Query:    1 DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTA-----------IAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATKKLLEEEKARA 160
            DS+  E  RRNK P+LP TGPLS  P+GDVSDG+D +F+   +PMTK+EE EPILPLGEVS D +EV E+G ILSLVE DGTIV+QG  G+  L E  VL +             +   + EPLGRIHEIFGPCA+PHYTVRV+GAA  HQLV RYQ A KKLL+ EK RA
Sbjct:  169 DSEVVEAPRRNKDPHLPLTGPLSIRPIGDVSDGEDEEFMGSALPMTKHEELEPILPLGEVSFDGAEVQEVGKILSLVEADGTIVVQGKPGLV-LDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQLVVRYQVALKKLLQMEKERA 338          
BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: A0A835ZC78_9STRA (Gar1/Naf1 RNA binding region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC78_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.650e-7
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 0
Query:   27 VGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMD--ESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTAIAQDRAS--------------KEPLGRIHEIFGPCAMPHYTVRVE 133
            V + +D +  D V+   P T NE   PI PL   ++D   +++  IG + ++V  +  I+++G AG+  L E SVL A A                   +  LGR+HE+FGP A PHY VRV+
Sbjct:  228 VDEDADEEAADAVSKAPPRTVNEVDVPIEPLAPDAVDLATAQLEPIGEVTAVVVAERVIIVRGDAGVGALDEGSVLCADAPPAEGXXXXXXXXXXXXERRVALGRVHEVFGPVAAPHYVVRVD 350          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTG9_ECTSI2.010e-5560.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNA9_9PHAE6.820e-5460.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZC78_9STRA5.650e-734.15Gar1/Naf1 RNA binding region-domain-containing pro... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 166..186
NoneNo IPR availablePANTHERPTHR31633:SF1H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1coord: 11..136
IPR038664H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domainGENE3D2.40.10.230coord: 49..148
e-value: 3.9E-13
score: 51.0
IPR007504H/ACA ribonucleoprotein complex, subunit Gar1/Naf1PFAMPF04410Gar1coord: 59..135
e-value: 1.0E-9
score: 38.4
IPR040309H/ACA ribonucleoprotein complex non-core subunit Naf1PANTHERPTHR31633FAMILY NOT NAMEDcoord: 11..136

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:9998..13680 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16256.1mRNA_S-dermatodea_contig807.16256.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig807 9996..13680 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig807.16256.1 ID=prot_S-dermatodea_contig807.16256.1|Name=mRNA_S-dermatodea_contig807.16256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=203bp
DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEE
QEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVL
TAIAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATK
KLLEEEKARAAALKAIVEADKAAAAAEAAAVAAEKEAAAAAAAAANGEPV
QED
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038664Gar1/Naf1_Cbf5-bd_sf
IPR007504H/ACA_rnp_Gar1/Naf1
IPR040309Naf1