mRNA_S-dermatodea_contig807.16256.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig807.16256.1
Unique NamemRNA_S-dermatodea_contig807.16256.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: D8LTG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTG9_ECTSI)

HSP 1 Score: 191 bits (486), Expect = 2.010e-55
Identity = 104/173 (60.12%), Postives = 123/173 (71.10%), Query Frame = 1 
Query:    1 DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTA-----------IAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATKKLLEEEKARAAA 486
            DS+  E  RRNK P+LP TGPLS  P+GDVSDG+D +F+   +PMTKNEE EPILPLGEVS+D +EV E+G ILSLVE DGTIV+QG  G+  L E  VL +             +   + EPLGRIHEIFGPCA+PHYTVRV+GAA  HQ+V RYQ A KKLL+ EK RA A
Sbjct:  170 DSEVIEAPRRNKDPHLPLTGPLSIRPIGDVSDGEDEEFMGAALPMTKNEELEPILPLGEVSLDGAEVQEVGKILSLVEADGTIVVQGKPGLV-LDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQVVVRYQVALKKLLQMEKERADA 341
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BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: A0A6H5JNA9_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNA9_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 6.820e-54
Identity = 103/171 (60.23%), Postives = 121/171 (70.76%), Query Frame = 1 
Query:    1 DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTA-----------IAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATKKLLEEEKARA 480
            DS+  E  RRNK P+LP TGPLS  P+GDVSDG+D +F+   +PMTK+EE EPILPLGEVS D +EV E+G ILSLVE DGTIV+QG  G+  L E  VL +             +   + EPLGRIHEIFGPCA+PHYTVRV+GAA  HQLV RYQ A KKLL+ EK RA
Sbjct:  169 DSEVVEAPRRNKDPHLPLTGPLSIRPIGDVSDGEDEEFMGSALPMTKHEELEPILPLGEVSFDGAEVQEVGKILSLVEADGTIVVQGKPGLV-LDEGCVLASRVVEPKENGEPSGEATGATEPLGRIHEIFGPCALPHYTVRVQGAAVQHQLVVRYQVALKKLLQMEKERA 338
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BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Match: A0A835ZC78_9STRA (Gar1/Naf1 RNA binding region-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC78_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 5.650e-7
Identity = 42/123 (34.15%), Postives = 63/123 (51.22%), Query Frame = 1 
Query:   79 VGDVSDGDDNDFVAGGVPMTKNEEQEPILPLGEVSMD--ESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVLTAIAQDRAS--------------KEPLGRIHEIFGPCAMPHYTVRVE 399
            V + +D +  D V+   P T NE   PI PL   ++D   +++  IG + ++V  +  I+++G AG+  L E SVL A A                   +  LGR+HE+FGP A PHY VRV+
Sbjct:  228 VDEDADEEAADAVSKAPPRTVNEVDVPIEPLAPDAVDLATAQLEPIGEVTAVVVAERVIIVRGDAGVGALDEGSVLCADAPPAEGXXXXXXXXXXXXERRVALGRVHEVFGPVAAPHYVVRVD 350
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig807.16256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LTG9_ECTSI2.010e-5560.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JNA9_9PHAE6.820e-5460.23Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A835ZC78_9STRA5.650e-734.15Gar1/Naf1 RNA binding region-domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig807contigS-dermatodea_contig807:9996..13680 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005580.1
Hectar predicted targeting categoryother localisation
Exons5
Model size611
Cds size609
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig807.16256.1prot_S-dermatodea_contig807.16256.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig807 9998..13680 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925317.7265244-CDS-S-dermatodea_contig807:9997..101351622925317.7265244-CDS-S-dermatodea_contig807:9997..10135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 9998..10135 -
1694079851.14547-CDS-S-dermatodea_contig807:9997..101351694079851.14547-CDS-S-dermatodea_contig807:9997..10135Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 9998..10135 -
1622925317.7360816-CDS-S-dermatodea_contig807:10984..111401622925317.7360816-CDS-S-dermatodea_contig807:10984..11140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 10985..11140 -
1694079851.157693-CDS-S-dermatodea_contig807:10984..111401694079851.157693-CDS-S-dermatodea_contig807:10984..11140Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 10985..11140 -
1622925317.7476006-CDS-S-dermatodea_contig807:11902..120701622925317.7476006-CDS-S-dermatodea_contig807:11902..12070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 11903..12070 -
1694079851.173786-CDS-S-dermatodea_contig807:11902..120701694079851.173786-CDS-S-dermatodea_contig807:11902..12070Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 11903..12070 -
1622925317.7600753-CDS-S-dermatodea_contig807:12904..130191622925317.7600753-CDS-S-dermatodea_contig807:12904..13019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 12905..13019 -
1694079851.1854897-CDS-S-dermatodea_contig807:12904..130191694079851.1854897-CDS-S-dermatodea_contig807:12904..13019Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 12905..13019 -
1622925317.7697234-CDS-S-dermatodea_contig807:13648..136801622925317.7697234-CDS-S-dermatodea_contig807:13648..13680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 13649..13680 -
1694079851.1950421-CDS-S-dermatodea_contig807:13648..136801694079851.1950421-CDS-S-dermatodea_contig807:13648..13680Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig807 13649..13680 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig807.16256.1

>prot_S-dermatodea_contig807.16256.1 ID=prot_S-dermatodea_contig807.16256.1|Name=mRNA_S-dermatodea_contig807.16256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=203bp
DSDRPEPARRNKHPYLPWTGPLSFCPVGDVSDGDDNDFVAGGVPMTKNEE
QEPILPLGEVSMDESEVIEIGTILSLVEPDGTIVIQGTAGMPPLAEESVL
TAIAQDRASKEPLGRIHEIFGPCAMPHYTVRVEGAATHHQLVTRYQTATK
KLLEEEKARAAALKAIVEADKAAAAAEAAAVAAEKEAAAAAAAAANGEPV
QED
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mRNA from alignment at S-dermatodea_contig807:9996..13680-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig807.16256.1 ID=mRNA_S-dermatodea_contig807.16256.1|Name=mRNA_S-dermatodea_contig807.16256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=3685bp|location=Sequence derived from alignment at S-dermatodea_contig807:9996..13680- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACAGCGACAGGCCCGAGCCTGCGCGGAGAAAGTGAGCAGAAAGTGGGAC
GGGTGCTGGAGACGCAAGCTCCTAAGCAGTGCTATGCGGTGGGGTTGTTG
GGGGGGGGTGATTTTGCGGCGCGGCTTCGACCTTGCCGGTTCGCTGCGTG
TGCGTGTTCGCGGGCGGCTGTTTCTCTTTTTGTCCGTCCCGAAGCGCTGT
TGATAGCTTGGAGCACCACGGGCTTTTCCCGTGCAGGCGTTGGCTGTTTT
CGTGCCCGTTCGTGGAGAAGGTGTGCCCTTTGGGCATGCTCATCTTGCGT
GATGCTACAGTATCAATGCTGTATAGCGTCGACCGAGGTTGTTGTGCGCG
GCGCTATATCTAACCAGCTGGGTTCTGAGTTGTACCACAACTCTCCTTGC
AGCGTTGGTCCAGCGTAAGACCTAGCACAACTTCTGCCTCTCCATCATTG
CTCAATGCCAATCAACGATGATGCGCGAATCTGACCTCAGAACGGTGCCA
ACCGCCGCGGTGCTGCTATGATATCGCTTGGGAATATGTCCTTGAAATTC
CCGGCTATTTATTTCATGGTCTTAGCCGTACGCGGCCTCCGACTCTTCGC
GCTTGGTGCCGAGCGCGAAACTAATGTGGCCGCCTGTGCTCTTGAATGTC
GCTGTTCGCAGCAAACATCCCTACTTGCCGTGGACGGGGCCGTTGTCGTT
TTGTCCGGTCGGAGACGTTTCCGATGGCGATGACAACGACTTCGTGGCTG
GCGGCGTGCCCATGACCAAGAACGAGGTAAGTTGTACCTGAGCCTTGAAC
CTTTCTTCTTTGTGCGGTAGCATGCGGTTTTGTGCGTTTATTTTGCGTAA
CGGTTGCCAGACTCGACAAGGACATCGAGGGTGCGGCGAGCCCTTCCTGT
AGGAGAGGGGGCCGTTTTTGCTTTCATTTTGGGCAGCCCAAGTTCCGAGG
TGTGTCCCCTCTGTTTCCTAGAGTTATCGTAGTTTGTGTCAGTTCCTTAT
GCTGTAGAGGTGATTCCGTTGTAATTGTGATAAATCAATAAATCAACCGA
TCAATTCAACTGTGCATTCATGTGCAAGAGCCCAAGCCTATCCGTTGACT
TCGGAGGCACTCGGCAGCTTGCCATGGGCTTGACGCGAGGCGGACGTGCA
CGAAACTGCTGTTGGATGCTGCGGTATGCCGTCTGCGCTGTATGCAGTAA
CCGTACCATTGTGCGCCACAGGTGTATGCCTTCCGAGGATACTCGTGTAC
TGTCCGAGTTCTGTCTCACTGCGTTTGGCGCGTGCTTGTTGGTGGGAAAC
AGTGGGTGTGTTTTTTATGTCACACACTGGCCGCAATAATTTTAGGCTTT
TGGCGTTTCCCAGGGTGGGTGGGGTACCCGGTAACTCGTGTGTATGGCGT
AGGTATATGTATAGTCGCTTCGGCCACGCATGCTGGAAGCCTCCCGGACG
TGCATGTAGGGGACAATATATATTTTCTTCGGAATGTATGCTACTTGTAT
CCACGCGTGTTCTGCTGGACTACACGCTAGACTGGTGCTGTTATGTCTGG
GCTAGCCTAACCTCCCCCCACCACACGTTGCGCTCGTGGTTTAATTGCAT
TCCATCGCAGGAGCAAGAGCCGATCCTCCCTCTAGGCGAGGTGTCCATGG
ATGAGTCGGAGGTGATAGAGATCGGTACTATCCTGTCGCTCGTGGAACCA
GACGGAACTATCGTGATTCAAGGCACGGCGGGGATGCCGCCGCTGGCTGA
GGAGAGCGTGTTGACTGCCATCGCCCAGGTGAGACAGGAAACATAACTTT
CGTTATAGTGGACGACTCGAGCAGTATTGGCGTGCGCTGGCTAGTCTGGG
AGAGGAATGCACTTTCGCTTTTTTCGCAACGGAGCTTCGGCAATGCATGT
GTAGAGTATTTTGGGAGGTTTTCTTGCTGTAGTTCTCATTTAAAAAAACA
TACATTCAACCAGCCTACATTGTGTAAGAGCGCACTTGCAACACATCGAG
GCTTGGTCTTGTCCCTGATGAATTGTTTTGTGGAAGTCGTTGTATTCTCC
TAGAGGGAGGAGAATAACGGGTTGTTTATTTGAGTTCAGGACGCGGTAAG
ATCACCTGGTTCTAGGCTCCCAAGATGCCCACACAAAGAGCACCCCATCG
TTTGTTTCTCGCGGTACCGTTTGCCACCTAGACCAAAAGTGAACGAGGGC
TCGCATTTGAAACATAGTTCTAGCTGGTGTTGCAAATATCCGGAGACGGC
AATAGAGGCTGCGTCGCATGGTTGATCTCCAGACGCATTTTCGCGTCCCA
TCAACCCCCCCGCACCCGCCTCTCAACCCTCATGCGCACCTACTTCGACC
ATGCCAAGGCACCTACGCAGATCTACAAGTGCACCATATTTAGCAGTACC
CGCTGGTTTGTCGTATCAACACCCTTTGAGCAATCACCCCGCGTCGTGGA
CACTGCCGTTAGCTTCCTTCCTTACGATTATCGGTCTTCAATGCTTTATC
GGTGTTTGTGGGCTGCCGTCCTGTTGTTGGGGATTTTCAGGACCGTGCCT
CCAAGGAGCCTCTGGGTCGTATCCACGAGATTTTCGGGCCTTGTGCGATG
CCTCACTACACCGTGCGGGTCGAGGGGGCGGCGACGCACCACCAGCTGGT
AACTCGGTATCAGACCGCCACAAAGAAACTCCTGGAGGAAGAGAAGGTGA
TGCAGGAGACATACCGAACCGTGATTTTTTTCTGTTTTTGCGTACCTGGA
GTAACATCGGCGGGAGGTGCGCCCTCAGCAGCCGAAGGTGGTGTGCGTGT
GCGTTTCCGTCGTACCATGGAGCGGTGGATCATGTCGGCTCATGACACAG
GTTCTCGTTTTGCGGCTTGTCCGATGGCGTTCATGCGATGAAACCCCGCC
CATCGTGGGCCAGCGTGACACATTGCGAGGAGCTGCTCCGGAGTCTCCAT
GTATTTTGTATACGATAGAGTAAGCTTTTGTGCTCGCACCGTTCATTGCC
GCCGCGTTTGTAGTGCACGACTGCTGCGACGTGGATAGTAGACCTACGAG
CTGGGAATAAGCTTGTCGCTATGGTACAGCTGTACAGCTTCCGTTAGCAT
CTCGCGACGATCTTCCTCCCAAACGCATCTGCAAGGAAGCCTGCTTGTGA
CACGTACACCCCAGAGGCCCATCCTTGCCCCCCAAGGTTACGGGCAAGAA
CGCTACCCCAGCGTCGCTCTTCATGTAGCACTAAACACGTATCGAAACAC
GTCTATATAGCAGCATACCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCGC
CCCCGCTCTCCCTCTCACCCCACACACGGTTGTAATGAGACCGATATACC
CCAACACACAAAAACNNNNNNNNNNGGAGGAGCCCCCCCCCGCGCGCCCC
TCCTCCTGGCGCCCACCCCCCCGAACAAAACACCCTTGACTAGCCGCCCC
CCCCCCCCCCCCCCCCCCCCGCGCGCGCGCCGTTTTTTCTCACCCTGATG
AACGCTGCGTTGCTTGAACGCTTCATCCGTACCACGTAAAACCAGGCGCG
AGCCGCGGCGTTGAAAGCTATAGTGGAAGCCGACAAGGCGGCTGCTGCAG
CGGAAGCGGCTGCTGTAGCGGCGGAAAAGGAGGCAGCCGCAGCTGCAGCC
GCGGCCGCAAACGGCGAGCCTGTTCAAGAGGATGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig807:9996..13680-

>mRNA_S-dermatodea_contig807.16256.1 ID=mRNA_S-dermatodea_contig807.16256.1|Name=mRNA_S-dermatodea_contig807.16256.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1218bp|location=Sequence derived from alignment at S-dermatodea_contig807:9996..13680- (Saccorhiza dermatodea SderLu1190fm monoicous)
GACAGCGACAGGCCCGAGCCTGCGCGGAGAAAGACAGCGACAGGCCCGAG
CCTGCGCGGAGAAACAAACATCCCTACTTGCCGTGGACGGGGCCGTTGTC
GTTTTGTCCGGTCGGAGACGTTTCCGATGGCGATGACAACGACTTCGTGG
CTGGCGGCGTGCCCATGACCAAGAACGAGCAAACATCCCTACTTGCCGTG
GACGGGGCCGTTGTCGTTTTGTCCGGTCGGAGACGTTTCCGATGGCGATG
ACAACGACTTCGTGGCTGGCGGCGTGCCCATGACCAAGAACGAGGAGCAA
GAGCCGATCCTCCCTCTAGGCGAGGTGTCCATGGATGAGTCGGAGGTGAT
AGAGATCGGTACTATCCTGTCGCTCGTGGAACCAGACGGAACTATCGTGA
TTCAAGGCACGGCGGGGATGCCGCCGCTGGCTGAGGAGAGCGTGTTGACT
GCCATCGCCCAGGAGCAAGAGCCGATCCTCCCTCTAGGCGAGGTGTCCAT
GGATGAGTCGGAGGTGATAGAGATCGGTACTATCCTGTCGCTCGTGGAAC
CAGACGGAACTATCGTGATTCAAGGCACGGCGGGGATGCCGCCGCTGGCT
GAGGAGAGCGTGTTGACTGCCATCGCCCAGGACCGTGCCTCCAAGGAGCC
TCTGGGTCGTATCCACGAGATTTTCGGGCCTTGTGCGATGCCTCACTACA
CCGTGCGGGTCGAGGGGGCGGCGACGCACCACCAGCTGGTAACTCGGTAT
CAGACCGCCACAAAGAAACTCCTGGAGGAAGAGAAGGACCGTGCCTCCAA
GGAGCCTCTGGGTCGTATCCACGAGATTTTCGGGCCTTGTGCGATGCCTC
ACTACACCGTGCGGGTCGAGGGGGCGGCGACGCACCACCAGCTGGTAACT
CGGTATCAGACCGCCACAAAGAAACTCCTGGAGGAAGAGAAGGCGCGAGC
CGCGGCGTTGAAAGCTATAGTGGAAGCCGACAAGGCGGCTGCTGCAGCGG
AAGCGGCTGCTGTAGCGGCGGAAAAGGAGGCAGCCGCAGCTGCAGCCGCG
GCCGCAAACGGCGAGCCTGTTCAAGAGGATGCGCGAGCCGCGGCGTTGAA
AGCTATAGTGGAAGCCGACAAGGCGGCTGCTGCAGCGGAAGCGGCTGCTG
TAGCGGCGGAAAAGGAGGCAGCCGCAGCTGCAGCCGCGGCCGCAAACGGC
GAGCCTGTTCAAGAGGAT
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