prot_S-dermatodea_contig8056.16240.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-dermatodea_contig8056.16240.1
Unique Name	prot_S-dermatodea_contig8056.16240.1
Type	polypeptide
Organism	Saccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length	111

Homology

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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 4.810e-29
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 0

Query:    3 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            F+ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  155 FSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 262

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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.260e-28
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 0

Query:    3 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++L  GCG   GKVV+L R+LYG+KQA R W
Sbjct:  169 YSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQASRTW 276

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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 4.890e-28
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 0

Query:    3 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct: 1297 YSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 1404

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.560e-28
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 0

Query:    3 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R LYG+KQA R W
Sbjct:  830 YSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTW 937

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.210e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0

Query:    8 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  358 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 460

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.230e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0

Query:    8 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  345 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 447

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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.250e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0

Query:    8 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  558 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 660

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.330e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 0

Query:    8 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  121 DEFGYAVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 223

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.000e-26
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 0

Query:    8 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 110
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L      QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  626 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFHAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 728

[Close]

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.040e-26
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = 0

Query:    3 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGR 108
            F  K D  G I KAKARLVA+GF  K+GVDY ETF+ T + +S ++ +A+A   D  L   D+ QAFV++ LD  VFMKLP GCG   GKVV+L ++LYG+KQA R
Sbjct:  831 FKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 936

The following BLAST results are available for this feature:

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot

BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KMK9_9PHAE	4.810e-29	53.70	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KM90_9PHAE	2.260e-28	51.85	Integrase catalytic domain-containing protein n=1 ...	[more]
A0A6H5KBJ6_9PHAE	4.890e-28	52.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JV09_9PHAE	6.560e-28	52.78	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K0K7_9PHAE	2.210e-27	54.37	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5KGK7_9PHAE	2.230e-27	54.37	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5K793_9PHAE	2.250e-27	54.37	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JWG1_9PHAE	2.330e-27	54.37	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JMP2_9PHAE	2.000e-26	53.40	Reverse transcriptase Ty1/copia-type domain-contai...	[more]
A0A6H5JB16_9PHAE	2.040e-26	53.77	Integrase catalytic domain-containing protein n=1 ...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 6..110 e-value: 3.8E-24 score: 85.7
IPR039537	Retrotransposon Ty1/copia-like	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..110
None	No IPR available	PANTHER	PTHR11439:SF273		coord: 3..110

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-dermatodea_contig8056	contig	S-dermatodea_contig8056:9207..9539 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-dermatodea_contig8056.16240.1	mRNA_S-dermatodea_contig8056.16240.1	Saccorhiza dermatodea SderLu1190fm monoicous	mRNA	S-dermatodea_contig8056 9204..9539 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-dermatodea_contig8056.16240.1 ID=prot_S-dermatodea_contig8056.16240.1|Name=mRNA_S-dermatodea_contig8056.16240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MAFALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSL
AIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRAL
YGVKQAGRQWS

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2
IPR039537	Retrotran_Ty1/copia-like