mRNA_S-dermatodea_contig8056.16240.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8056.16240.1
Unique NamemRNA_S-dermatodea_contig8056.16240.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KMK9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMK9_9PHAE)

HSP 1 Score: 118 bits (295), Expect = 5.000e-29
Identity = 58/108 (53.70%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:   10 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            F+ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  155 FSWKRDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 262
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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KM90_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KM90_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 2.350e-28
Identity = 56/108 (51.85%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:   10 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++L  GCG   GKVV+L R+LYG+KQA R W
Sbjct:  169 YSRKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLHPGCGALSGKVVRLRRSLYGLKQASRTW 276
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BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KBJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBJ6_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 5.090e-28
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1 
Query:   10 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct: 1297 YSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCPFDAQQAFVQSELDEIVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 1404
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JV09_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV09_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.820e-28
Identity = 57/108 (52.78%), Postives = 74/108 (68.52%), Query Frame = 1 
Query:   10 FALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            ++ K D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R LYG+KQA R W
Sbjct:  830 YSWKGDEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRGLYGLKQASRTW 937
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.300e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   25 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  358 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 460
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5KGK7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGK7_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.320e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   25 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  345 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 447
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5K793_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K793_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.340e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   25 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  558 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 660
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JWG1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWG1_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.420e-27
Identity = 56/103 (54.37%), Postives = 72/103 (69.90%), Query Frame = 1 
Query:   25 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L   D  QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  121 DEFGYAVRAKARLVARGFAQREGVDFFETFSPYPSITSIRLLAAIACVLDWDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 223
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JB16_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB16_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.340e-27
Identity = 58/109 (53.21%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    1 RMAFALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGR 327
            R  F  K D  G I KAKARLVA+GF  K+GVDY ETF+ T + +S ++ +A+A   D  L   D+ QAFV++ LD  VFMKLP GCG   GKVV+L ++LYG+KQA R
Sbjct:  828 RWVFKWKADETGKIVKAKARLVAKGFRQKYGVDYLETFSPTANAASIRLLVALACKYDLELLHWDIEQAFVQSKLDHEVFMKLPPGCGSMSGKVVRLNKSLYGLKQASR 936
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Match: A0A6H5JMP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMP2_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 2.080e-26
Identity = 55/103 (53.40%), Postives = 71/103 (68.93%), Query Frame = 1 
Query:   25 DRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSLAIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRALYGVKQAGRQW 333
            D  G+  +AKARLVARGF  + GVD+FETF+  PS++S ++  AIA   DW L      QAFV++ LD  VF++LP GCG   GKVV+L R+LYG+KQA R W
Sbjct:  626 DEFGYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLDWDLCHFHAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTW 728
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8056.16240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KMK9_9PHAE5.000e-2953.70Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KM90_9PHAE2.350e-2851.85Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KBJ6_9PHAE5.090e-2852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JV09_9PHAE6.820e-2852.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0K7_9PHAE2.300e-2754.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KGK7_9PHAE2.320e-2754.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K793_9PHAE2.340e-2754.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JWG1_9PHAE2.420e-2754.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JB16_9PHAE8.340e-2753.21Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JMP2_9PHAE2.080e-2653.40Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8056contigS-dermatodea_contig8056:9204..9539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score105.1
Seed ortholog evalue2.1e-20
Seed eggNOG ortholog120017.I2FSX8
EggNOG free text desc.Encoded by
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelBasidiomycota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size336
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.73728-UTR-S-dermatodea_contig8056:9203..92061622925316.73728-UTR-S-dermatodea_contig8056:9203..9206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8056 9204..9206 +
1694079850.5524313-UTR-S-dermatodea_contig8056:9203..92061694079850.5524313-UTR-S-dermatodea_contig8056:9203..9206Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8056 9204..9206 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.749475-CDS-S-dermatodea_contig8056:9206..95391622925316.749475-CDS-S-dermatodea_contig8056:9206..9539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 9207..9539 +
1694079850.5642264-CDS-S-dermatodea_contig8056:9206..95391694079850.5642264-CDS-S-dermatodea_contig8056:9206..9539Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 9207..9539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8056.16240.1prot_S-dermatodea_contig8056.16240.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8056 9207..9539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8056.16240.1

>prot_S-dermatodea_contig8056.16240.1 ID=prot_S-dermatodea_contig8056.16240.1|Name=mRNA_S-dermatodea_contig8056.16240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=111bp
MAFALKTDRDGFITKAKARLVARGFGAKFGVDYFETFAATPSVSSTKVSL
AIAANNDWPLYDLDVTQAFVRTPLDTYVFMKLPMGCGERMGKVVKLYRAL
YGVKQAGRQWS
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mRNA from alignment at S-dermatodea_contig8056:9204..9539+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8056.16240.1 ID=mRNA_S-dermatodea_contig8056.16240.1|Name=mRNA_S-dermatodea_contig8056.16240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=336bp|location=Sequence derived from alignment at S-dermatodea_contig8056:9204..9539+ (Saccorhiza dermatodea SderLu1190fm monoicous)
CGAATGGCGTTCGCGTTGAAAACTGACCGTGACGGCTTCATCACGAAGGC
GAAGGCGAGGTTGGTTGCTCGGGGTTTTGGGGCGAAGTTTGGCGTAGACT
ACTTCGAGACGTTTGCCGCCACCCCGTCCGTTTCGTCCACTAAGGTGTCG
TTGGCCATTGCCGCTAACAACGACTGGCCGTTGTATGATCTAGATGTAAC
GCAGGCATTTGTTAGGACTCCGCTTGACACATATGTCTTCATGAAGCTTC
CGATGGGTTGCGGAGAGAGGATGGGTAAGGTGGTAAAACTTTATCGAGCT
CTGTATGGAGTGAAACAGGCGGGCCGTCAGTGGTCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig8056:9204..9539+

>mRNA_S-dermatodea_contig8056.16240.1 ID=mRNA_S-dermatodea_contig8056.16240.1|Name=mRNA_S-dermatodea_contig8056.16240.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at S-dermatodea_contig8056:9204..9539+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCGTTCGCGTTGAAAACTGACCGTGACGGCTTCATCACGAAGGCGAA
GGCGAGGTTGGTTGCTCGGGGTTTTGGGGCGAAGTTTGGCGTAGACTACT
TCGAGACGTTTGCCGCCACCCCGTCCGTTTCGTCCACTAAGGTGTCGTTG
GCCATTGCCGCTAACAACGACTGGCCGTTGTATGATCTAGATGTAACGCA
GGCATTTGTTAGGACTCCGCTTGACACATATGTCTTCATGAAGCTTCCGA
TGGGTTGCGGAGAGAGGATGGGTAAGGTGGTAAAACTTTATCGAGCTCTG
TATGGAGTGAAACAGGCGGGCCGTCAGTGGTCGATGGCGTTCGCGTTGAA
AACTGACCGTGACGGCTTCATCACGAAGGCGAAGGCGAGGTTGGTTGCTC
GGGGTTTTGGGGCGAAGTTTGGCGTAGACTACTTCGAGACGTTTGCCGCC
ACCCCGTCCGTTTCGTCCACTAAGGTGTCGTTGGCCATTGCCGCTAACAA
CGACTGGCCGTTGTATGATCTAGATGTAACGCAGGCATTTGTTAGGACTC
CGCTTGACACATATGTCTTCATGAAGCTTCCGATGGGTTGCGGAGAGAGG
ATGGGTAAGGTGGTAAAACTTTATCGAGCTCTGTATGGAGTGAAACAGGC
GGGCCGTCAGTGGTCG
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