prot_S-dermatodea_contig8056.16239.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig8056.16239.1
Unique Nameprot_S-dermatodea_contig8056.16239.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length273
Homology
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A6H5KCR0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR0_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 1.030e-95
Identity = 156/287 (54.36%), Postives = 187/287 (65.16%), Query Frame = 0
Query:    1 VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQIL---------------------SVGSANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYRGPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNRPPGAH 266
            VV+NPRFGV HTLR L LH  VL+    LA  GW EF+EWG GP+GQIL                     S   A A  S  PERGG GFALLLLYDL +TA +V LS LKY+  L+EL++ P SA  EE   E   FF ++GQAIL A RT+Y+F++CGHC   RK+C R ++ ING    + IH AA ++VLARE+DVAFP+ATE+ELK M ADE+CAIC  TM SAKRL+C HFFH+ CLRQYLN S   + LCPICRA ISW+P+ G     N   NR  G H
Sbjct:  130 VVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGYSYFGAAASTSAHPERGGTGFALLLLYDLAVTATEVGLSALKYVTNLLELHKDPDSAYTEEGCLEQTVFFTRLGQAILGASRTIYMFKSCGHCAFVRKVCIRVMSTINGGQTFNRIHSAACRLVLAREMDVAFPDATEQELKTMAADESCAICLKTMTSAKRLECQHFFHAGCLRQYLNTSARTEPLCPICRAPISWNPTAGG----NKPVNRGEGDH 412          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: D8LFG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG6_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.550e-74
Identity = 128/231 (55.41%), Postives = 152/231 (65.80%), Query Frame = 0
Query:    1 VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQILSVGS---------------------ANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYRGPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKR 210
            VV+NPRFGV HTLR L LH  VL+    LA  GW EF+EWG GP+GQIL   S                     A A  S DPERGG GFALLLLYDL + A +V LS LKY   L+EL++ P SA  EE + E   FF ++GQAIL A RTVY+F++CGHC L RK+C R ++ ING    + IH AA +IVLARE+DVAFP+ATE+ELK M ADE+CAIC  TM SAKR
Sbjct:  130 VVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGYGYFGAAASTSTDPERGGTGFALLLLYDLAVIATEVGLSALKYTSNLLELHKDPDSAYTEEGSLEQTVFFTRLGQAILGASRTVYMFKSCGHCALVRKVCIRIMSTINGGQTFNRIHSAACRIVLAREMDVAFPDATEQELKTMAADESCAICLKTMTSAKR 360          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A251UH13_HELAN (Putative RPM1 interacting protein 2 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UH13_HELAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.090e-12
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLA-RELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTL 253
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+ +A R L  A P+AT +E+++   D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +      G+++
Sbjct:  263 NLGFFLDIMTLLMAFGHYVYIWRLHG-MTFHLVDAVLFLNIRALLSAIAKRIRGFVKLRIALRTLHGALPDATSEEIQSY--DDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPLFVGTPEGNSV 400          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A5N6P6J9_9ASTR (RING-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6J9_9ASTR)

HSP 1 Score: 77.0 bits (188), Expect = 3.000e-12
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLA-RELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTL 253
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+ +A R L  A P+AT K+++    D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +      G+++
Sbjct:  366 NLGFFLDIMTLLMALGHYVYIWRLHG-MTFHLVDAVLFLNIRALLSAVAKRIRGFIKLRIALRTLHGALPDATSKDIQ--AYDDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPLFVGTPEGNSV 503          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A5D3E2H1_CUCME (E3 ubiquitin protein ligase RIN2-like isoform X1 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E2H1_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 8.110e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 243
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+  A   L+ A P+AT +EL+    D+ CAICR  M  AK+L C+H FH +CLR +L+        CP CR  +
Sbjct:   18 NLGFFLDMATLLMALGHYVYIWRLHG-MTFNLVDAVLFLNIRALLSAIVKRIRGFMKLRKALGALNAALPDATPEELQ--AYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLNEYYSCPTCRKPL 145          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A7J8TM35_9ROSI (RING-type domain-containing protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8TM35_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-11
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHC--TLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 243
            NL FF+ +   I++ G  V I+   G         + T  +  I GF  L +  RA         L  A P+AT +E++    D+ CAICR +M  AK+L C+H FH SCLR +L+        CP CR  +
Sbjct:  120 NLGFFLDLATLIMAVGHYVLIWWLHGMAFHLADAALLTAIVKRIKGFIKLRMALRA---------LHAALPDATSEEIQ--AYDDECAICRESMAKAKKLHCNHLFHLSCLRSWLDQGLNEAYSCPTCRKPL 240          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A7I8KS56_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KS56_SPIIN)

HSP 1 Score: 73.6 bits (179), Expect = 4.100e-11
Identity = 48/132 (36.36%), Postives = 64/132 (48.48%), Query Frame = 0
Query:  157 GFHALD-------------LIHRAAWKIVLAR---ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNRPPGAHTPPARH 272
            GFH LD             +I R    I L +    LDV+ P+AT +EL+  T D+ CAICR  M+ AK+L C+H FH SCL+ +L+        CP CR  +    S  H     A+SN   G+ T    H
Sbjct:  280 GFHLLDAVLFMNLRALIGGIIKRVKGYIKLRKALLSLDVSLPDATSEELR--TFDDECAICREPMSRAKKLSCNHLFHLSCLKSWLDQGLADVYSCPTCRRPLFLSSSRDH-----ASSNTRGGSTTEQQAH 404          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A0A0KG75_CUCSA (RING-type domain-containing protein n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KG75_CUCSA)

HSP 1 Score: 73.6 bits (179), Expect = 4.140e-11
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 243
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+  A   L+ A P+AT +EL+    D+ CAICR  M  AK+L C+H FH +CLR +L+        CP CR  +
Sbjct:  256 NLGFFLDMATLLMALGHYVYIWRLHG-MTFNLVDAVLFLNIRALLSAIVKRIRGFMKLRKALGALNAALPDATSEELQ--AYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLNEYYSCPTCRKPL 383          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A2U1PRW7_ARTAN (RPM1 interacting protein 2 n=4 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PRW7_ARTAN)

HSP 1 Score: 72.8 bits (177), Expect = 7.600e-11
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 0
Query:  114 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 243
            N+ FF+ +   +++ G  V+I++  G  T        FL +     A+    R   K+ +A   L  A P+AT +E++  T D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +
Sbjct:  266 NVGFFLDIMTLLMALGHYVHIWRLHG-MTFHLVDAVLFLNIRALLSAVAKRTRGFIKLRIALGTLHGALPDATSEEIQ--TYDDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPL 393          
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: UPI0014258CE4 (E3 ubiquitin-protein ligase AMFR-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258CE4)

HSP 1 Score: 72.8 bits (177), Expect = 8.480e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 0
Query:  173 LARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNR 261
            +   L+  F  AT++EL+N   D+TCAIC + M +A++L C+HFFH+SCLR ++ + T     CP CR ++S +P       R  + N+
Sbjct:  423 VVNSLETRFSYATKEELEN--GDDTCAICWDQMTTARKLPCNHFFHNSCLRSWMEHDTS----CPTCRKSLSLNPVRTEQADRENSQNQ 505          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCR0_9PHAE1.030e-9554.36RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LFG6_ECTSI2.550e-7455.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A251UH13_HELAN2.090e-1233.33Putative RPM1 interacting protein 2 n=1 Tax=Helian... [more]
A0A5N6P6J9_9ASTR3.000e-1233.33RING-type domain-containing protein n=2 Tax=Mikani... [more]
A0A5D3E2H1_CUCME8.110e-1234.35E3 ubiquitin protein ligase RIN2-like isoform X1 n... [more]
A0A7J8TM35_9ROSI1.320e-1134.09RING-type domain-containing protein n=1 Tax=Gossyp... [more]
A0A7I8KS56_SPIIN4.100e-1136.36Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A0A0KG75_CUCSA4.140e-1134.35RING-type domain-containing protein n=10 Tax=Cucur... [more]
A0A2U1PRW7_ARTAN7.600e-1133.59RPM1 interacting protein 2 n=4 Tax=Artemisia annua... [more]
UPI0014258CE48.480e-1138.20E3 ubiquitin-protein ligase AMFR-like n=1 Tax=Anne... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 198..239
e-value: 1.1E-6
score: 38.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 197..240
e-value: 2.0E-9
score: 37.6
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 198..240
score: 12.297
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 172..247
e-value: 7.3E-16
score: 59.3
NoneNo IPR availablePANTHERPTHR15067FAMILY NOT NAMEDcoord: 174..260
NoneNo IPR availablePANTHERPTHR15067:SF5E3 UBIQUITIN-PROTEIN LIGASE AMFRcoord: 174..260
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 36..273
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..14
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 15..35
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 193..246
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8056contigS-dermatodea_contig8056:314..3011 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8056.16239.1mRNA_S-dermatodea_contig8056.16239.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig8056 314..3013 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig8056.16239.1 ID=prot_S-dermatodea_contig8056.16239.1|Name=mRNA_S-dermatodea_contig8056.16239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=273bp
VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQILS
VGSANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYR
GPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTR
FLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAI
CRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVG
HTLKRNAASNRPPGAHTPPARHN
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD