mRNA_S-dermatodea_contig8056.16239.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8056.16239.1
Unique NamemRNA_S-dermatodea_contig8056.16239.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A6H5KCR0_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCR0_9PHAE)

HSP 1 Score: 304 bits (779), Expect = 1.030e-95
Identity = 156/287 (54.36%), Postives = 187/287 (65.16%), Query Frame = 1 
Query:    1 VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQIL---------------------SVGSANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYRGPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNRPPGAH 798
            VV+NPRFGV HTLR L LH  VL+    LA  GW EF+EWG GP+GQIL                     S   A A  S  PERGG GFALLLLYDL +TA +V LS LKY+  L+EL++ P SA  EE   E   FF ++GQAIL A RT+Y+F++CGHC   RK+C R ++ ING    + IH AA ++VLARE+DVAFP+ATE+ELK M ADE+CAIC  TM SAKRL+C HFFH+ CLRQYLN S   + LCPICRA ISW+P+ G     N   NR  G H
Sbjct:  130 VVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGYSYFGAAASTSAHPERGGTGFALLLLYDLAVTATEVGLSALKYVTNLLELHKDPDSAYTEEGCLEQTVFFTRLGQAILGASRTIYMFKSCGHCAFVRKVCIRVMSTINGGQTFNRIHSAACRLVLAREMDVAFPDATEQELKTMAADESCAICLKTMTSAKRLECQHFFHAGCLRQYLNTSARTEPLCPICRAPISWNPTAGG----NKPVNRGEGDH 412
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: D8LFG6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFG6_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 2.550e-74
Identity = 128/231 (55.41%), Postives = 152/231 (65.80%), Query Frame = 1 
Query:    1 VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQILSVGS---------------------ANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYRGPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKR 630
            VV+NPRFGV HTLR L LH  VL+    LA  GW EF+EWG GP+GQIL   S                     A A  S DPERGG GFALLLLYDL + A +V LS LKY   L+EL++ P SA  EE + E   FF ++GQAIL A RTVY+F++CGHC L RK+C R ++ ING    + IH AA +IVLARE+DVAFP+ATE+ELK M ADE+CAIC  TM SAKR
Sbjct:  130 VVENPRFGVGHTLRTLGLHAAVLYLGAHLARLGWNEFFEWGGGPIGQILLSPSPAVVDGDVIELNGNDGYGYFGAAASTSTDPERGGTGFALLLLYDLAVIATEVGLSALKYTSNLLELHKDPDSAYTEEGSLEQTVFFTRLGQAILGASRTVYMFKSCGHCALVRKVCIRIMSTINGGQTFNRIHSAACRIVLAREMDVAFPDATEQELKTMAADESCAICLKTMTSAKR 360
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A251UH13_HELAN (Putative RPM1 interacting protein 2 n=1 Tax=Helianthus annuus TaxID=4232 RepID=A0A251UH13_HELAN)

HSP 1 Score: 77.4 bits (189), Expect = 2.090e-12
Identity = 47/141 (33.33%), Postives = 73/141 (51.77%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLA-RELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTL 759
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+ +A R L  A P+AT +E+++   D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +      G+++
Sbjct:  263 NLGFFLDIMTLLMAFGHYVYIWRLHG-MTFHLVDAVLFLNIRALLSAIAKRIRGFVKLRIALRTLHGALPDATSEEIQSY--DDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPLFVGTPEGNSV 400
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A5N6P6J9_9ASTR (RING-type domain-containing protein n=2 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P6J9_9ASTR)

HSP 1 Score: 77.0 bits (188), Expect = 3.000e-12
Identity = 47/141 (33.33%), Postives = 72/141 (51.06%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLA-RELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTL 759
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+ +A R L  A P+AT K+++    D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +      G+++
Sbjct:  366 NLGFFLDIMTLLMALGHYVYIWRLHG-MTFHLVDAVLFLNIRALLSAVAKRIRGFIKLRIALRTLHGALPDATSKDIQ--AYDDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPLFVGTPEGNSV 503
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A5D3E2H1_CUCME (E3 ubiquitin protein ligase RIN2-like isoform X1 n=1 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5D3E2H1_CUCME)

HSP 1 Score: 73.2 bits (178), Expect = 8.110e-12
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 729
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+  A   L+ A P+AT +EL+    D+ CAICR  M  AK+L C+H FH +CLR +L+        CP CR  +
Sbjct:   18 NLGFFLDMATLLMALGHYVYIWRLHG-MTFNLVDAVLFLNIRALLSAIVKRIRGFMKLRKALGALNAALPDATPEELQ--AYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLNEYYSCPTCRKPL 145
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A7J8TM35_9ROSI (RING-type domain-containing protein n=1 Tax=Gossypium klotzschianum TaxID=34286 RepID=A0A7J8TM35_9ROSI)

HSP 1 Score: 74.7 bits (182), Expect = 1.320e-11
Identity = 45/132 (34.09%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHC--TLGRKICTRFLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 729
            NL FF+ +   I++ G  V I+   G         + T  +  I GF  L +  RA         L  A P+AT +E++    D+ CAICR +M  AK+L C+H FH SCLR +L+        CP CR  +
Sbjct:  120 NLGFFLDLATLIMAVGHYVLIWWLHGMAFHLADAALLTAIVKRIKGFIKLRMALRA---------LHAALPDATSEEIQ--AYDDECAICRESMAKAKKLHCNHLFHLSCLRSWLDQGLNEAYSCPTCRKPL 240
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A7I8KS56_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KS56_SPIIN)

HSP 1 Score: 73.6 bits (179), Expect = 4.100e-11
Identity = 48/132 (36.36%), Postives = 64/132 (48.48%), Query Frame = 1 
Query:  469 GFHALD-------------LIHRAAWKIVLAR---ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNRPPGAHTPPARH 816
            GFH LD             +I R    I L +    LDV+ P+AT +EL+  T D+ CAICR  M+ AK+L C+H FH SCL+ +L+        CP CR  +    S  H     A+SN   G+ T    H
Sbjct:  280 GFHLLDAVLFMNLRALIGGIIKRVKGYIKLRKALLSLDVSLPDATSEELR--TFDDECAICREPMSRAKKLSCNHLFHLSCLKSWLDQGLADVYSCPTCRRPLFLSSSRDH-----ASSNTRGGSTTEQQAH 404
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A0A0KG75_CUCSA (RING-type domain-containing protein n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0KG75_CUCSA)

HSP 1 Score: 73.6 bits (179), Expect = 4.140e-11
Identity = 45/131 (34.35%), Postives = 66/131 (50.38%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 729
            NL FF+ +   +++ G  VYI++  G  T        FL +     A+    R   K+  A   L+ A P+AT +EL+    D+ CAICR  M  AK+L C+H FH +CLR +L+        CP CR  +
Sbjct:  256 NLGFFLDMATLLMALGHYVYIWRLHG-MTFNLVDAVLFLNIRALLSAIVKRIRGFMKLRKALGALNAALPDATSEELQ--AYDDECAICREPMAKAKKLNCNHLFHLACLRSWLDQGLNEYYSCPTCRKPL 383
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: A0A2U1PRW7_ARTAN (RPM1 interacting protein 2 n=4 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1PRW7_ARTAN)

HSP 1 Score: 72.8 bits (177), Expect = 7.600e-11
Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:  340 NLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTRFLTVINGFHALDLIHRAAWKIVLAR-ELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATI 729
            N+ FF+ +   +++ G  V+I++  G  T        FL +     A+    R   K+ +A   L  A P+AT +E++  T D+ CAICR  M  AK+L C+H FH SCLR +L+     +  CP CR  +
Sbjct:  266 NVGFFLDIMTLLMALGHYVHIWRLHG-MTFHLVDAVLFLNIRALLSAVAKRTRGFIKLRIALGTLHGALPDATSEEIQ--TYDDECAICREPMAKAKKLSCNHLFHLSCLRSWLDQGLSDNYSCPTCRKPL 393
[Close]
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Match: UPI0014258CE4 (E3 ubiquitin-protein ligase AMFR-like n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014258CE4)

HSP 1 Score: 72.8 bits (177), Expect = 8.480e-11
Identity = 34/89 (38.20%), Postives = 54/89 (60.67%), Query Frame = 1 
Query:  517 LARELDVAFPNATEKELKNMTADETCAICRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVGHTLKRNAASNR 783
            +   L+  F  AT++EL+N   D+TCAIC + M +A++L C+HFFH+SCLR ++ + T     CP CR ++S +P       R  + N+
Sbjct:  423 VVNSLETRFSYATKEELEN--GDDTCAICWDQMTTARKLPCNHFFHNSCLRSWMEHDTS----CPTCRKSLSLNPVRTEQADRENSQNQ 505
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8056.16239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCR0_9PHAE1.030e-9554.36RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D8LFG6_ECTSI2.550e-7455.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A251UH13_HELAN2.090e-1233.33Putative RPM1 interacting protein 2 n=1 Tax=Helian... [more]
A0A5N6P6J9_9ASTR3.000e-1233.33RING-type domain-containing protein n=2 Tax=Mikani... [more]
A0A5D3E2H1_CUCME8.110e-1234.35E3 ubiquitin protein ligase RIN2-like isoform X1 n... [more]
A0A7J8TM35_9ROSI1.320e-1134.09RING-type domain-containing protein n=1 Tax=Gossyp... [more]
A0A7I8KS56_SPIIN4.100e-1136.36Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A0A0KG75_CUCSA4.140e-1134.35RING-type domain-containing protein n=10 Tax=Cucur... [more]
A0A2U1PRW7_ARTAN7.600e-1133.59RPM1 interacting protein 2 n=4 Tax=Artemisia annua... [more]
UPI0014258CE48.480e-1138.20E3 ubiquitin-protein ligase AMFR-like n=1 Tax=Anne... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8056contigS-dermatodea_contig8056:314..3013 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score73.2
Seed ortholog evalue2.2e-10
Seed eggNOG ortholog192875.XP_004348416.1
KEGG koko:K10636
KEGG Pathwayko04141,map04141
GOsGO:0000209,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0006464,GO:0006807,GO:0006950,GO:0006986,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009987,GO:0010033,GO:0010941,GO:0016567,GO:0019538,GO:0019899,GO:0023052,GO:0030968,GO:0032446,GO:0032501,GO:0032502,GO:0033554,GO:0034620,GO:0034976,GO:0035264,GO:0035966,GO:0035967,GO:0036211,GO:0040007,GO:0042221,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0048589,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070647,GO:0070887,GO:0071310,GO:0071704,GO:1901214,GO:1901564,GO:1990381
EggNOG free text desc.BAT3 complex binding
EggNOG OGs38F9G@33154,COG5243@1,KOG0802@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_002250.1
Exons4
Model size821
Cds size819
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8056.16239.1prot_S-dermatodea_contig8056.16239.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8056 314..3011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.6716805-CDS-S-dermatodea_contig8056:313..6251622925316.6716805-CDS-S-dermatodea_contig8056:313..625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 314..625 +
1694079850.5069654-CDS-S-dermatodea_contig8056:313..6251694079850.5069654-CDS-S-dermatodea_contig8056:313..625Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 314..625 +
1622925316.682461-CDS-S-dermatodea_contig8056:1554..17431622925316.682461-CDS-S-dermatodea_contig8056:1554..1743Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 1555..1743 +
1694079850.5219169-CDS-S-dermatodea_contig8056:1554..17431694079850.5219169-CDS-S-dermatodea_contig8056:1554..1743Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 1555..1743 +
1622925316.6942906-CDS-S-dermatodea_contig8056:2295..24231622925316.6942906-CDS-S-dermatodea_contig8056:2295..2423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 2296..2423 +
1694079850.532144-CDS-S-dermatodea_contig8056:2295..24231694079850.532144-CDS-S-dermatodea_contig8056:2295..2423Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 2296..2423 +
1622925316.7079027-CDS-S-dermatodea_contig8056:2821..30111622925316.7079027-CDS-S-dermatodea_contig8056:2821..3011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 2822..3011 +
1694079850.5424175-CDS-S-dermatodea_contig8056:2821..30111694079850.5424175-CDS-S-dermatodea_contig8056:2821..3011Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8056 2822..3011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8056.16239.1

>prot_S-dermatodea_contig8056.16239.1 ID=prot_S-dermatodea_contig8056.16239.1|Name=mRNA_S-dermatodea_contig8056.16239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=273bp
VVDNPRFGVLHTLRVLALHGLVLFATLQLAVFGWAEFYEWGKGPLGQILS
VGSANAEGSRDPERGGVGFALLLLYDLGLTAVDVSLSGLKYLGYLVELYR
GPSSACAEEDATENLDFFVQVGQAILSAGRTVYIFQACGHCTLGRKICTR
FLTVINGFHALDLIHRAAWKIVLARELDVAFPNATEKELKNMTADETCAI
CRNTMNSAKRLQCDHFFHSSCLRQYLNNSTGGDVLCPICRATISWHPSVG
HTLKRNAASNRPPGAHTPPARHN
back to top

mRNA from alignment at S-dermatodea_contig8056:314..3013+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8056.16239.1 ID=mRNA_S-dermatodea_contig8056.16239.1|Name=mRNA_S-dermatodea_contig8056.16239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2700bp|location=Sequence derived from alignment at S-dermatodea_contig8056:314..3013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGTTGACAACCCGCGCTTTGGCGTGCTGCACACCTTGAGAGTCCTCGC
TCTCCACGGGCTCGTGCTGTTCGCCACCCTGCAGCTGGCGGTGTTCGGCT
GGGCGGAGTTTTACGAGTGGGGCAAAGGGCCGCTGGGACAGATCCTATCG
GTCGGCAGCGCCAATGCCGAGGGGTCGAGGGATCCAGAAAGGGGTGGGGT
GGGGTTCGCGCTCCTGCTGCTGTACGACCTGGGCTTGACGGCCGTGGATG
TGTCGCTGTCGGGACTCAAGTACCTGGGCTACCTCGTGGAGCTGTACAGG
GGGCCCAGCTCGGTGAGTGCGATTTTTTTTCGGTCCGCGGCGAGCGGTAT
CCGGTATTCTCAAAGCAGTTTTTCGCGTGTGCCTATACTAGCGTTGTCCC
CGGACGCCCGGATGGCAGGTATAGATATTAATGGTACGCTCTTTTGAGAG
GGCGTTGTTTGTATGCGTATATGTGTTTGTGTGTGTCGTCTTTCGTGGCG
GCCGACAAGTATGATTTGCAGGAGCATCCCGCGTGCCTTGCGTCGCCGCC
AATCCGACATTCTGTTCTGGCACGTCCGATGCCCTATCACGGAGGTACGC
AGTAATCAGTATAGTAGTAATCAGGACCAATTTGTTGCTCGATTGCGTAA
TCAACTCTTGTTTTTTTACCCTTTTGGTACTATACTATGAATATTATAGT
ATACAGTAGTAGTAGTATTAGTATATTGTTAGTAGTAGGGCTCTCCGAAA
CGACAAAAAAACTCTCTCGATGCCAGTCGACAGCTATGACAGCCCCGGTT
GGTTCCCTTGGGCTCTCATTCTTTCTCATATCCTGCGCCATCAGGCGTCG
GTTCTGTTCCCAAAGCTCCGCTTCAAGCACGCCTCATTACGCGCTAACCG
ACGCTCCAAACAGGGGGCTACTACCAAAAGGGTCAAAATTAAAAATTGTC
CTGAGCGCTTTTTCATGGTTGCACGTTTTTGTAGGTTTTTATTTTGACAT
TTCAGGCCCGGCCGAAAGATGGCAGGTCTTGCAAGGCCAGACCATAGTGA
TCTCTGGTTTGTTATGTTAATTATCCGTTTGGCACAGTTTGTCCTGATTA
CTGATATTCTGCGTACCTCCTTAATACAGAGTAGCATTTAGTTTTCAGAC
CACCCCCCCCCCAGAGGGCGAACTTACGATAGAATAGCTGCGCGCGCTCG
TTCTCGTTCCATTTCTGTGCCGCTGATTTTTGTGAACACAGGCTTGTGCG
GAGGAAGATGCAACAGAGAATCTTGACTTCTTCGTCCAGGTGGGCCAAGC
CATCTTGAGCGCGGGTCGCACCGTCTACATATTCCAGGCGTGCGGGCACT
GCACGCTGGGCAGGAAGATTTGCACGCGCTTCCTCACAGTCATAAACGGG
TTCCATGCCCTGGATCTGATTCACCGCGCGGTGAGTCCTCTTTTTTCTCC
ACAGTCTGGAATGTTGACGGTGACGGCATACGTGTGGTCACGTCGATCTG
TTGTCCAGCGCTGTAGACGACCGGCGGCGGGCCGTGTGGAAGGAGAGGGT
GGAAAGGGTTGTTGTGACCAAAACATGTTCCCCTCCGTCTGCGACGCCGT
CACACGCCGATGCCAGCCCAAGAAGCAGCCACAATTCGCAGATCTGGCTG
GCGCGACATCGAGCAAGGCCATGGCCGACGTCACAGAGCAACGGACGGGC
CGACTTTGGTCCGTTCGCCAAAACGGCAGCCAGCCGCAAAATTTTCCTTC
TTATTTACAGTATCATGAATATTACAGGGAGCGCGAAGACCACGCTTTTC
GAGCCGACTATTATAGTATTTGCTCGAGCGTTCGTATGATTACATTTTCT
ACAAACGTATTTTTAACCCCCTTCACGCCAACCCCTCGCCCTCCGTCCCG
TTCTGCTTCTTCGCGTCTCGTGTGTCCGTCTCCGTGTCCCGTGTGTGGTG
ACTTGATGGCGGTTGTTGTTTTCGTCCATCAGGCTTGGAAAATCGTGCTC
GCGAGGGAGTTGGACGTAGCATTCCCCAACGCAACTGAGAAGGAGCTGAA
GAACATGACGGCTGACGAGACCTGCGCTATCTGTCGCAATACTATGAACT
CGGCCAAACGGTAAGGTTACGCAAGCGCCGGCGACGTTTCGGAAGTTGCG
GTACTGGTGTGCGATTTCTCTCCACAACTTAGTTCGCCAGAAGACGAGCA
GAGAATAACGGTGGACTCTCCAAGGCTAAAGCCGTCGTGTTTGAGATTTT
CGCGACTGAGTGCAATTTTTTCGAACGAATGAATGCCTGTGCCGTGGCCA
ATGTTTTGCAACTTGCCCCCCCAAGGCCTCTCCTTCTCCGGACTGGGAGT
CCGCACTCGTGATGGCTTAGTTGGGTAGGGACAAACCACGCTGTCTTTGC
CCACGCATATAACCACAAAGAAAATTTGAATAAATCATGACCCGCGTTGC
CCCCCCCCCCCCCCACTCCGAAACCGTCCTGTTTTCCTTACCTCGTTCCC
TCACCCAGGTTGCAGTGCGACCACTTCTTCCACTCGTCGTGCCTCCGGCA
GTATCTCAACAACTCCACGGGTGGCGACGTCCTCTGCCCCATCTGCCGCG
CTACGATATCCTGGCACCCTTCCGTCGGACACACGCTAAAGCGGAACGCG
GCCTCTAACCGCCCCCCGGGCGCCCACACGCCGCCAGCGAGACACAACGC
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8056:314..3013+

>mRNA_S-dermatodea_contig8056.16239.1 ID=mRNA_S-dermatodea_contig8056.16239.1|Name=mRNA_S-dermatodea_contig8056.16239.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1638bp|location=Sequence derived from alignment at S-dermatodea_contig8056:314..3013+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTGTTGACAACCCGCGCTTTGGCGTGCTGCACACCTTGAGAGTCCTCGC
TCTCCACGGGCTCGTGCTGTTCGCCACCCTGCAGCTGGCGGTGTTCGGCT
GGGCGGAGTTTTACGAGTGGGGCAAAGGGCCGCTGGGACAGATCCTATCG
GTCGGCAGCGCCAATGCCGAGGGGTCGAGGGATCCAGAAAGGGGTGGGGT
GGGGTTCGCGCTCCTGCTGCTGTACGACCTGGGCTTGACGGCCGTGGATG
TGTCGCTGTCGGGACTCAAGTACCTGGGCTACCTCGTGGAGCTGTACAGG
GGGCCCAGCTCGGTTGTTGACAACCCGCGCTTTGGCGTGCTGCACACCTT
GAGAGTCCTCGCTCTCCACGGGCTCGTGCTGTTCGCCACCCTGCAGCTGG
CGGTGTTCGGCTGGGCGGAGTTTTACGAGTGGGGCAAAGGGCCGCTGGGA
CAGATCCTATCGGTCGGCAGCGCCAATGCCGAGGGGTCGAGGGATCCAGA
AAGGGGTGGGGTGGGGTTCGCGCTCCTGCTGCTGTACGACCTGGGCTTGA
CGGCCGTGGATGTGTCGCTGTCGGGACTCAAGTACCTGGGCTACCTCGTG
GAGCTGTACAGGGGGCCCAGCTCGGCTTGTGCGGAGGAAGATGCAACAGA
GAATCTTGACTTCTTCGTCCAGGTGGGCCAAGCCATCTTGAGCGCGGGTC
GCACCGTCTACATATTCCAGGCGTGCGGGCACTGCACGCTGGGCAGGAAG
ATTTGCACGCGCTTCCTCACAGTCATAAACGGGTTCCATGCCCTGGATCT
GATTCACCGCGCGGCTTGTGCGGAGGAAGATGCAACAGAGAATCTTGACT
TCTTCGTCCAGGTGGGCCAAGCCATCTTGAGCGCGGGTCGCACCGTCTAC
ATATTCCAGGCGTGCGGGCACTGCACGCTGGGCAGGAAGATTTGCACGCG
CTTCCTCACAGTCATAAACGGGTTCCATGCCCTGGATCTGATTCACCGCG
CGGCTTGGAAAATCGTGCTCGCGAGGGAGTTGGACGTAGCATTCCCCAAC
GCAACTGAGAAGGAGCTGAAGAACATGACGGCTGACGAGACCTGCGCTAT
CTGTCGCAATACTATGAACTCGGCCAAACGGCTTGGAAAATCGTGCTCGC
GAGGGAGTTGGACGTAGCATTCCCCAACGCAACTGAGAAGGAGCTGAAGA
ACATGACGGCTGACGAGACCTGCGCTATCTGTCGCAATACTATGAACTCG
GCCAAACGGTTGCAGTGCGACCACTTCTTCCACTCGTCGTGCCTCCGGCA
GTATCTCAACAACTCCACGGGTGGCGACGTCCTCTGCCCCATCTGCCGCG
CTACGATATCCTGGCACCCTTCCGTCGGACACACGCTAAAGCGGAACGCG
GCCTCTAACCGCCCCCCGGGCGCCCACACGCCGCCAGCGAGACACAACGT
TGCAGTGCGACCACTTCTTCCACTCGTCGTGCCTCCGGCAGTATCTCAAC
AACTCCACGGGTGGCGACGTCCTCTGCCCCATCTGCCGCGCTACGATATC
CTGGCACCCTTCCGTCGGACACACGCTAAAGCGGAACGCGGCCTCTAACC
GCCCCCCGGGCGCCCACACGCCGCCAGCGAGACACAAC
back to top