prot_S-dermatodea_contig80532.16237.1 (polypeptide) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-dermatodea_contig80532.16237.1
Unique Nameprot_S-dermatodea_contig80532.16237.1
Typepolypeptide
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Sequence length48
Homology
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BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.560e-8
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:    2 MACTRAGELEEGMYLLREMWERDVPRDLQTY 32
            MAC RAG+LEEGM+LLREMW R+V RD+QTY
Sbjct: 1159 MACARAGQLEEGMFLLREMWAREVSRDVQTY 1189
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BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 4.570e-8
Identity = 24/31 (77.42%), Postives = 28/31 (90.32%), Query Frame = 0 
Query:    2 MACTRAGELEEGMYLLREMWERDVPRDLQTY 32
            MAC RAG+LEEGM+LLREMW R+V RD+QTY
Sbjct: 1291 MACARAGQLEEGMFLLREMWAREVSRDVQTY 1321
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI4.560e-877.42PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE4.570e-877.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 3..28
e-value: 2.9E-5
score: 21.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..48
e-value: 7.3E-8
score: 34.3

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80532contigS-dermatodea_contig80532:155..298 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80532.16237.1mRNA_S-dermatodea_contig80532.16237.1Saccorhiza dermatodea SderLu1190fm monoicousmRNAS-dermatodea_contig80532 140..298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-dermatodea_contig80532.16237.1 ID=prot_S-dermatodea_contig80532.16237.1|Name=mRNA_S-dermatodea_contig80532.16237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
MMACTRAGELEEGMYLLREMWERDVPRDLQTYNTAMALCKSVGEWTRA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf