mRNA_S-dermatodea_contig80532.16237.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig80532.16237.1
Unique NamemRNA_S-dermatodea_contig80532.16237.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Match: D7G9B5_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9B5_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 8.990e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 VFNAGMMACTRAGELEEGMYLLREMWERDVPRDLQTY 111
            VFNAG+MAC RAG+LEEGM+LLREMW R+V RD+QTY
Sbjct: 1153 VFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1189
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BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Match: A0A6H5KZI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZI4_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 9.000e-12
Identity = 29/37 (78.38%), Postives = 34/37 (91.89%), Query Frame = 1 
Query:    1 VFNAGMMACTRAGELEEGMYLLREMWERDVPRDLQTY 111
            VFNAG+MAC RAG+LEEGM+LLREMW R+V RD+QTY
Sbjct: 1285 VFNAGIMACARAGQLEEGMFLLREMWAREVSRDVQTY 1321
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig80532.16237.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G9B5_ECTSI8.990e-1278.38PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KZI4_9PHAE9.000e-1278.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig80532contigS-dermatodea_contig80532:140..298 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size159
Cds size144
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.5139024-UTR-S-dermatodea_contig80532:139..1541622925316.5139024-UTR-S-dermatodea_contig80532:139..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80532 140..154 +
1694079850.3680024-UTR-S-dermatodea_contig80532:139..1541694079850.3680024-UTR-S-dermatodea_contig80532:139..154Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig80532 140..154 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925316.528546-CDS-S-dermatodea_contig80532:154..2981622925316.528546-CDS-S-dermatodea_contig80532:154..298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80532 155..298 +
1694079850.376292-CDS-S-dermatodea_contig80532:154..2981694079850.376292-CDS-S-dermatodea_contig80532:154..298Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig80532 155..298 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig80532.16237.1prot_S-dermatodea_contig80532.16237.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig80532 155..298 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig80532.16237.1

>prot_S-dermatodea_contig80532.16237.1 ID=prot_S-dermatodea_contig80532.16237.1|Name=mRNA_S-dermatodea_contig80532.16237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=48bp
MMACTRAGELEEGMYLLREMWERDVPRDLQTYNTAMALCKSVGEWTRA
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mRNA from alignment at S-dermatodea_contig80532:140..298+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig80532.16237.1 ID=mRNA_S-dermatodea_contig80532.16237.1|Name=mRNA_S-dermatodea_contig80532.16237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=159bp|location=Sequence derived from alignment at S-dermatodea_contig80532:140..298+ (Saccorhiza dermatodea SderLu1190fm monoicous)
GTTTTCAACGCGGGCATGATGGCGTGCACGAGAGCGGGAGAGCTAGAGGA
AGGCATGTACCTGCTTCGGGAGATGTGGGAGAGGGACGTGCCCAGGGACC
TGCAGACATACAATACCGCCATGGCGCTGTGCAAGAGTGTGGGGGAGTGG
ACGAGAGCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig80532:140..298+

>mRNA_S-dermatodea_contig80532.16237.1 ID=mRNA_S-dermatodea_contig80532.16237.1|Name=mRNA_S-dermatodea_contig80532.16237.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at S-dermatodea_contig80532:140..298+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGGCGTGCACGAGAGCGGGAGAGCTAGAGGAAGGCATGTACCTGCT
TCGGGAGATGTGGGAGAGGGACGTGCCCAGGGACCTGCAGACATACAATA
CCGCCATGGCGCTGTGCAAGAGTGTGGGGGAGTGGACGAGAGCGATGATG
GCGTGCACGAGAGCGGGAGAGCTAGAGGAAGGCATGTACCTGCTTCGGGA
GATGTGGGAGAGGGACGTGCCCAGGGACCTGCAGACATACAATACCGCCA
TGGCGCTGTGCAAGAGTGTGGGGGAGTGGACGAGAGCG
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