mRNA_S-dermatodea_contig8037.16222.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI) HSP 1 Score: 193 bits (490), Expect = 5.110e-54 Identity = 142/314 (45.22%), Postives = 166/314 (52.87%), Query Frame = 1
Query: 37 LSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD---GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKA--------MFDFLNVTIHASAKGKVGPGNNSLRPVSQARPSLAGRR--PVFD--GASRAGSGXXXXXXXXERKGSAEXXAVGSASAAGNGAAPAKNAA-----------------------DMSRSELRSHVVGAREAEVALAAKVARLEETVERNSERDPRIAAAARQKLEEIRAQGRQVRASRDRAERVLGDRGSSKGKGGG-----KGGLFSF 849
L SD Y+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGI+RPVPIRVLPERR LDHLRVD GG G + MF+FLN T+HAS + G S L G+R P+FD GAS + S S +A+ AG A K+ MS++ELRSH+VGAREAE LAAK+ RL+ET+ RN E DPR AA ARQKL+++ Q ++VR SR RAER L +RG GK K GLFSF
Sbjct: 20 LVSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKAEGXXXXXXASP----LPGQRIRPLFDAGGASYSSSAAT----------STSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF 319
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE) HSP 1 Score: 183 bits (465), Expect = 1.490e-47 Identity = 131/286 (45.80%), Postives = 153/286 (53.50%), Query Frame = 1
Query: 37 LSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD-----------GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKAMFDFLNVTIHASAKGKVGPGNNSLRPV---------------SQARPSLAGRR----PVFDGASRAGSGXXXXXXXXERKGSAEXXAVGSASAAGNGAAPAKNAADMSRSELRSHVVGAREAEVALAAKVARLEETVERNSERDPRIAAAARQKLEEIRAQGRQVRASRDRAERVLGDRG 804
L SD Y+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGI+RPVPIRVLPERR LDHLRVD GG XXX MF+FLN T+HAS + + PS A P A+ AG+ + + G A GAA A MS++ELRSH+VGAREAE LAAK+ RL+ET+ RN E DPR AA ARQKL+++ Q ++VR SR RAER L +RG
Sbjct: 355 LGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAA-----ARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG 635
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A3L6ETS4_MAIZE (Zinc finger CCCH domain-containing protein 18 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6ETS4_MAIZE) HSP 1 Score: 85.1 bits (209), Expect = 1.600e-14 Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
G+ +D +F WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH DGG G RK + K A + E ++++F+F+N
Sbjct: 115 GIQTDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFIN 221
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: B4FAY0_MAIZE (Zinc finger CCCH domain-containing protein 22 n=7 Tax=Andropogoneae TaxID=147429 RepID=B4FAY0_MAIZE) HSP 1 Score: 85.1 bits (209), Expect = 5.380e-14 Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query: 34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
G+ +D +F WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH DGG G RK + K A + E ++++F+F+N
Sbjct: 289 GIQTDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFIN 395
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A4P9VUV8_9FUNG (G-patch domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VUV8_9FUNG) HSP 1 Score: 80.5 bits (197), Expect = 8.500e-13 Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1
Query: 43 SDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD--------GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKAMFDFLNVTIHA 354
SD FGDWE HTKG GSR+M +MGYR G GLG+ +GI RPV +R+L + L H + G PG K S G+ SS +FDFLN +++A
Sbjct: 146 SDGTPFGDWEAHTKGIGSRLMLKMGYRMGSGLGRHAEGIVRPVEVRILSSGKGLGHSGMKRKRTSTPHSGSGASTPGRKRGKTGSDAGSISSASAS----TVFDFLNGSLNA 253
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: I1IDD7_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDD7_BRADI) HSP 1 Score: 80.9 bits (198), Expect = 1.290e-12 Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL-----RVDG---GXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
G+ S+ +F WEQHT+G S+MM RMGYR G GLG QG+ P+P++VLP +++LDH + DG G G RK K A + E ++++F F+N
Sbjct: 291 GVQSETVIFAKWEQHTRGVASKMMARMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAATTKEDGKSIGRDKKRSRGGKRKRDKKFAELARAAKVEEEERSVFSFMN 401
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A0D9VM24_9ORYZ (G-patch domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VM24_9ORYZ) HSP 1 Score: 80.5 bits (197), Expect = 1.670e-12 Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1
Query: 31 GGLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDH------LRVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
GG+ SD +F WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH + G G RK + K A + E ++++F F+N
Sbjct: 284 GGVQSDTVIFAKWENHTRGVASKMMAKMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAASEVNDSVGSGKKRSRGGKRKREKKFAEQARAAKAEEEERSVFSFIN 393
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: K3YRR6_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YRR6_SETIT) HSP 1 Score: 80.1 bits (196), Expect = 2.260e-12 Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 22 AEHGGLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDG--GXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
A G+ +D +F WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH DG G G RK + K A + E ++++F F+N
Sbjct: 286 ANFSGIQTDTVIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALAASEADGSVGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFSFIN 398
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: UPI001F5D34AA (zinc finger CCCH domain-containing protein 18-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D34AA) HSP 1 Score: 79.0 bits (193), Expect = 5.340e-12 Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query: 34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRV-----DGGXXXXXP--GAGARKHKSKPGA--ASSLDTHEPQKAMFDFLN 339
G+ S+ +F WEQHT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH DGG G ++ + K A A + E ++++F F+N
Sbjct: 288 GVQSETLIFAKWEQHTRGIASKMMAKMGYREGMGLGIYGQGMVDPIPVKVLPPKQSLDHALAPTAGEDGGSKARDKKRSRGGKRKRDKKFAELARAAKAEEAERSVFSFMN 398
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A5J9UY15_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UY15_9POAL) HSP 1 Score: 78.6 bits (192), Expect = 7.070e-12 Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVDGGXXXXXPGAGARKHKSKPGA----------ASSLDTHEPQKAMFDFLN 339
G+ +D +F WE HT+G S+MM +MGYR G GLG QG+ P+P++VLP +++LDH G G+ K +S+ G A + E ++++F F+N
Sbjct: 290 GIQTDTVIFAKWEHHTRGVASKMMAKMGYREGMGLGLSGQGMLDPIPVKVLPPKQSLDHAFATN---EANEGTGSGKKRSRGGKRKRDKKFAEQARAAKAEEAERSVFSFIN 398 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig8037.16222.1 >prot_S-dermatodea_contig8037.16222.1 ID=prot_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=251bp MMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVDGGGGGGAPGback to top mRNA from alignment at S-dermatodea_contig8037:7472..9395+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig8037.16222.1 ID=mRNA_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1924bp|location=Sequence derived from alignment at S-dermatodea_contig8037:7472..9395+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig8037:7472..9395+ >mRNA_S-dermatodea_contig8037.16222.1 ID=mRNA_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at S-dermatodea_contig8037:7472..9395+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |