mRNA_S-dermatodea_contig8037.16222.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig8037.16222.1
Unique NamemRNA_S-dermatodea_contig8037.16222.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: D8LBV1_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBV1_ECTSI)

HSP 1 Score: 193 bits (490), Expect = 5.110e-54
Identity = 142/314 (45.22%), Postives = 166/314 (52.87%), Query Frame = 1
Query:   37 LSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD---GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKA--------MFDFLNVTIHASAKGKVGPGNNSLRPVSQARPSLAGRR--PVFD--GASRAGSGXXXXXXXXERKGSAEXXAVGSASAAGNGAAPAKNAA-----------------------DMSRSELRSHVVGAREAEVALAAKVARLEETVERNSERDPRIAAAARQKLEEIRAQGRQVRASRDRAERVLGDRGSSKGKGGG-----KGGLFSF 849
            L SD Y+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGI+RPVPIRVLPERR LDHLRVD   GG      G   +                            MF+FLN T+HAS   +   G       S     L G+R  P+FD  GAS + S             S       +A+ AG   A  K+                          MS++ELRSH+VGAREAE  LAAK+ RL+ET+ RN E DPR AA ARQKL+++  Q ++VR SR RAER L +RG   GK        K GLFSF
Sbjct:   20 LVSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKTARSVGGDGKXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMSKRKAEGXXXXXXASP----LPGQRIRPLFDAGGASYSSSAAT----------STSIPTATTAAGAGTAHALRKSGVFPDKKRDGGXXXXXXXXXXXXXXRMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRGGGGGKXXXXXXXXKAGLFSF 319          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A6H5KPC0_9PHAE (Zinc finger CCCH-type with G patch domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPC0_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.490e-47
Identity = 131/286 (45.80%), Postives = 153/286 (53.50%), Query Frame = 1
Query:   37 LSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD-----------GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKAMFDFLNVTIHASAKGKVGPGNNSLRPV---------------SQARPSLAGRR----PVFDGASRAGSGXXXXXXXXERKGSAEXXAVGSASAAGNGAAPAKNAADMSRSELRSHVVGAREAEVALAAKVARLEETVERNSERDPRIAAAARQKLEEIRAQGRQVRASRDRAERVLGDRG 804
            L SD Y+FGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGI+RPVPIRVLPERR LDHLRVD           GG  XXX                          MF+FLN T+HAS +                              + PS A       P    A+ AG+             + +    G   A   GAA     A MS++ELRSH+VGAREAE  LAAK+ RL+ET+ RN E DPR AA ARQKL+++  Q ++VR SR RAER L +RG
Sbjct:  355 LGSDAYMFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGISRPVPIRVLPERRTLDHLRVDDVGGGKSARSVGGDGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMFNFLNKTMHASMRKXXXXXXXXXXXXXXXXXXXXRLLFDAGGDSYPSCASSSSTSIPTATTATGAGTAHPLRKSGVLSDTNRDGGGAGVGRAGVGGAA-----ARMSQAELRSHLVGAREAEATLAAKIGRLKETISRNEELDPRTAAQARQKLKQVCQQAKEVRDSRGRAERALENRG 635          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A3L6ETS4_MAIZE (Zinc finger CCCH domain-containing protein 18 n=1 Tax=Zea mays TaxID=4577 RepID=A0A3L6ETS4_MAIZE)

HSP 1 Score: 85.1 bits (209), Expect = 1.600e-14
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
            G+ +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH       DGG        G RK + K    A +    E ++++F+F+N
Sbjct:  115 GIQTDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFIN 221          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: B4FAY0_MAIZE (Zinc finger CCCH domain-containing protein 22 n=7 Tax=Andropogoneae TaxID=147429 RepID=B4FAY0_MAIZE)

HSP 1 Score: 85.1 bits (209), Expect = 5.380e-14
Identity = 41/107 (38.32%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
            G+ +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH       DGG        G RK + K    A +    E ++++F+F+N
Sbjct:  289 GIQTDTMIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALASSEADGGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFNFIN 395          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A4P9VUV8_9FUNG (G-patch domain-containing protein (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9VUV8_9FUNG)

HSP 1 Score: 80.5 bits (197), Expect = 8.500e-13
Identity = 46/112 (41.07%), Postives = 59/112 (52.68%), Query Frame = 1
Query:   43 SDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVD--------GGXXXXXPGAGARKHKSKPGAASSLDTHEPQKAMFDFLNVTIHA 354
            SD   FGDWE HTKG GSR+M +MGYR G GLG+  +GI RPV +R+L   + L H  +          G     PG    K  S  G+ SS         +FDFLN +++A
Sbjct:  146 SDGTPFGDWEAHTKGIGSRLMLKMGYRMGSGLGRHAEGIVRPVEVRILSSGKGLGHSGMKRKRTSTPHSGSGASTPGRKRGKTGSDAGSISSASAS----TVFDFLNGSLNA 253          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: I1IDD7_BRADI (Uncharacterized protein n=3 Tax=Brachypodium distachyon TaxID=15368 RepID=I1IDD7_BRADI)

HSP 1 Score: 80.9 bits (198), Expect = 1.290e-12
Identity = 43/111 (38.74%), Postives = 62/111 (55.86%), Query Frame = 1
Query:   34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL-----RVDG---GXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
            G+ S+  +F  WEQHT+G  S+MM RMGYR G GLG   QG+  P+P++VLP +++LDH      + DG   G        G RK   K    A +    E ++++F F+N
Sbjct:  291 GVQSETVIFAKWEQHTRGVASKMMARMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAATTKEDGKSIGRDKKRSRGGKRKRDKKFAELARAAKVEEEERSVFSFMN 401          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A0D9VM24_9ORYZ (G-patch domain-containing protein n=1 Tax=Leersia perrieri TaxID=77586 RepID=A0A0D9VM24_9ORYZ)

HSP 1 Score: 80.5 bits (197), Expect = 1.670e-12
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   31 GGLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDH------LRVDGGXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
            GG+ SD  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH      +    G        G RK + K    A +    E ++++F F+N
Sbjct:  284 GGVQSDTVIFAKWENHTRGVASKMMAKMGYREGMGLGVSGQGMVDPIPVKVLPPKQSLDHAVAASEVNDSVGSGKKRSRGGKRKREKKFAEQARAAKAEEEERSVFSFIN 393          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: K3YRR6_SETIT (Uncharacterized protein n=14 Tax=Paniceae TaxID=147428 RepID=K3YRR6_SETIT)

HSP 1 Score: 80.1 bits (196), Expect = 2.260e-12
Identity = 42/113 (37.17%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   22 AEHGGLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHL----RVDG--GXXXXXPGAGARKHKSK-PGAASSLDTHEPQKAMFDFLN 339
            A   G+ +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH       DG  G        G RK + K    A +    E ++++F F+N
Sbjct:  286 ANFSGIQTDTVIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHALAASEADGSVGSGKKRSRGGKRKREKKFAEQARAAKAEEAERSVFSFIN 398          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: UPI001F5D34AA (zinc finger CCCH domain-containing protein 18-like n=1 Tax=Lolium rigidum TaxID=89674 RepID=UPI001F5D34AA)

HSP 1 Score: 79.0 bits (193), Expect = 5.340e-12
Identity = 41/111 (36.94%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRV-----DGGXXXXXP--GAGARKHKSKPGA--ASSLDTHEPQKAMFDFLN 339
            G+ S+  +F  WEQHT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH        DGG          G ++ + K  A  A +    E ++++F F+N
Sbjct:  288 GVQSETLIFAKWEQHTRGIASKMMAKMGYREGMGLGIYGQGMVDPIPVKVLPPKQSLDHALAPTAGEDGGSKARDKKRSRGGKRKRDKKFAELARAAKAEEAERSVFSFMN 398          
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Match: A0A5J9UY15_9POAL (Uncharacterized protein n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9UY15_9POAL)

HSP 1 Score: 78.6 bits (192), Expect = 7.070e-12
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query:   34 GLSSDVYVFGDWEQHTKGFGSRMMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVDGGXXXXXPGAGARKHKSKPGA----------ASSLDTHEPQKAMFDFLN 339
            G+ +D  +F  WE HT+G  S+MM +MGYR G GLG   QG+  P+P++VLP +++LDH            G G+ K +S+ G           A +    E ++++F F+N
Sbjct:  290 GIQTDTVIFAKWEHHTRGVASKMMAKMGYREGMGLGLSGQGMLDPIPVKVLPPKQSLDHAFATN---EANEGTGSGKKRSRGGKRKRDKKFAEQARAAKAEEAERSVFSFIN 398          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig8037.16222.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBV1_ECTSI5.110e-5445.22G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KPC0_9PHAE1.490e-4745.80Zinc finger CCCH-type with G patch domain-containi... [more]
A0A3L6ETS4_MAIZE1.600e-1438.32Zinc finger CCCH domain-containing protein 18 n=1 ... [more]
B4FAY0_MAIZE5.380e-1438.32Zinc finger CCCH domain-containing protein 22 n=7 ... [more]
A0A4P9VUV8_9FUNG8.500e-1341.07G-patch domain-containing protein (Fragment) n=1 T... [more]
I1IDD7_BRADI1.290e-1238.74Uncharacterized protein n=3 Tax=Brachypodium dista... [more]
A0A0D9VM24_9ORYZ1.670e-1237.27G-patch domain-containing protein n=1 Tax=Leersia ... [more]
K3YRR6_SETIT2.260e-1237.17Uncharacterized protein n=14 Tax=Paniceae TaxID=14... [more]
UPI001F5D34AA5.340e-1236.94zinc finger CCCH domain-containing protein 18-like... [more]
A0A5J9UY15_9POAL7.070e-1234.82Uncharacterized protein n=1 Tax=Eragrostis curvula... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig8037contigS-dermatodea_contig8037:7472..9395 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue2.6e-34
Seed eggNOG ortholog2880.D8LBV1
KEGG koko:K17569
EggNOG free text desc.negative regulation of epidermal growth factor-activated receptor activity
EggNOG OGsKOG2185@1,KOG2185@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionG-patch domain protein
Ec32 orthologEc-27_002590.1
Exons2
Model size1444
Cds size753
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig8037.16222.1prot_S-dermatodea_contig8037.16222.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig8037 7571..8803 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.5892394-UTR-S-dermatodea_contig8037:7471..75701622925315.5892394-UTR-S-dermatodea_contig8037:7471..7570Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8037 7472..7570 +
1694079849.7822437-UTR-S-dermatodea_contig8037:7471..75701694079849.7822437-UTR-S-dermatodea_contig8037:7471..7570Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8037 7472..7570 +
1622925315.623485-UTR-S-dermatodea_contig8037:8803..93951622925315.623485-UTR-S-dermatodea_contig8037:8803..9395Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8037 8804..9395 +
1694079849.8178248-UTR-S-dermatodea_contig8037:8803..93951694079849.8178248-UTR-S-dermatodea_contig8037:8803..9395Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig8037 8804..9395 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622925315.5998151-CDS-S-dermatodea_contig8037:7570..76241622925315.5998151-CDS-S-dermatodea_contig8037:7570..7624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8037 7571..7624 +
1694079849.7969134-CDS-S-dermatodea_contig8037:7570..76241694079849.7969134-CDS-S-dermatodea_contig8037:7570..7624Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8037 7571..7624 +
1622925315.609143-CDS-S-dermatodea_contig8037:8104..88031622925315.609143-CDS-S-dermatodea_contig8037:8104..8803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8037 8105..8803 +
1694079849.8089309-CDS-S-dermatodea_contig8037:8104..88031694079849.8089309-CDS-S-dermatodea_contig8037:8104..8803Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig8037 8105..8803 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig8037.16222.1

>prot_S-dermatodea_contig8037.16222.1 ID=prot_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=251bp
MMNRMGYRRGEGLGKEKQGIARPVPIRVLPERRALDHLRVDGGGGGGAPG
AGARKHKSKPGAASSLDTHEPQKAMFDFLNVTIHASAKGKVGPGNNSLRP
VSQARPSLAGRRPVFDGASRAGSGGGGGGGGGERKGSAEGGAVGSASAAG
NGAAPAKNAADMSRSELRSHVVGAREAEVALAAKVARLEETVERNSERDP
RIAAAARQKLEEIRAQGRQVRASRDRAERVLGDRGSSKGKGGGKGGLFSF
*
back to top

mRNA from alignment at S-dermatodea_contig8037:7472..9395+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig8037.16222.1 ID=mRNA_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1924bp|location=Sequence derived from alignment at S-dermatodea_contig8037:7472..9395+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGCGCTGGAGGGGGAAAGGGCGCGGAGCATGGCGGTCTGAGCTCGGACGT GTACGTGTTCGGCGATTGGGAGCAGCACACCAAGGGGTTCGGCTCGCGGA TGATGAATCGCATGGGCTACCGGCGTGGGGAAGGGCTTGGAAAGGAGAAG CAGGTGAGTGTTGCGGTTGGCTGCCTCGGGAAGTTTTCCTAGTTTGTAGA GAACTGTGTCCGTCCTTCCGCGATGCAGCTTTGGCTTGTCCAGTACTCTG TGGTCCACAGTTCTGCGCGAACGCGATTTTCTACCTGTTAGGTATGGTCG GGGGTCAACCTTAACAGAGCACCGCCTGGCAGCCTGGAAAGCGAAACCTC AGAGCGACGCTCGTGGCTGTAGTTTTTTTTTTGTGTTCCTACCCTCCCCT TCGTCCTGCCTCCCCGACTCGCGCAAACACCTTTGGTCGTCCCTGCCCCG AGTGGCGCCGGGCCTACAGTAGTATACTTTCACGCCAGCCCCTTAACCTC GCTTGCTGCATCTTTTTCTCCGCGGACGACTCACGCACCCCTCTCCACCT TTCCCACCTGCTGCCCGCCGCTGCACCTGCCGCACCTCGCTTCGTTTGTA CCGCCGCCACGGTGCAACAAAAAAAAACAAAAGGGCATCGCCCGCCCGGT GCCCATTCGAGTTCTGCCGGAGCGACGGGCCTTGGACCACCTCAGAGTGG ACGGGGGCGGCGGCGGCGGCGCTCCGGGGGCAGGCGCTCGCAAGCACAAG TCGAAACCCGGGGCGGCATCTTCACTGGACACCCACGAGCCGCAGAAGGC CATGTTCGACTTCCTCAACGTCACGATACACGCGTCCGCGAAAGGCAAGG TCGGCCCCGGCAATAATTCCCTGCGTCCGGTAAGCCAGGCACGGCCGAGC CTCGCGGGCAGAAGGCCGGTTTTCGACGGGGCCTCGCGGGCTGGATCGGG AGGAGGAGGAGGGGGCGGGGGAGGAGAGAGAAAGGGCTCGGCCGAAGGGG GTGCGGTGGGCAGTGCGTCGGCAGCCGGAAACGGTGCCGCGCCGGCGAAG AATGCGGCGGACATGTCGCGGTCCGAGCTTCGGTCGCACGTTGTCGGGGC GCGGGAGGCGGAGGTCGCGTTGGCCGCGAAGGTGGCGCGCTTGGAGGAGA CTGTCGAGCGAAACTCGGAGCGAGACCCGAGGATAGCCGCGGCGGCGAGG CAGAAGCTTGAGGAGATCCGGGCGCAGGGTCGACAGGTCCGGGCTAGCAG GGATCGGGCGGAGAGGGTGCTGGGAGATCGGGGGAGTAGCAAGGGGAAAG GGGGTGGGAAGGGCGGCCTGTTTTCCTTCTGATCGTTCGTTGTCTGCTGC TGGGTGGGTCTCTCGTGCTCTGTCTGGTTTTGATGTGTATATAATAGTTA TTTAGTTTTCTACTTCGTATAGTAGCATCTATTTTTTAATGGACGCCACT GGAGACCGTGGCGGGTGGCGCGCGAGACTACGATAGCGTCTTGTCATGGC GCAACATTGGAAGTACTCTGAGTGCGAGGGAAATCGACTCGGTTGTTTGT GAATAGTCCTGGTACTCCTTGGCATGCGCGTCACCGGGCGTTTAGCCGGT ACTTGGTGTCCATCGATGCCTTTTTGAGCGTCCAGCGGCGGGACAGGTCG AGGCTCGATTGCGTACAGCAGCAATGCTGTGCAGCAAAGCAGCACGACGT TTTCTTCAAGTTTTTTCTTATTATTTTTTCGACGAAGGTTGGGCTGCACT TCACCCATATGCTTACCCATTTTCCAAGTCGCTGCAGGAGGGAGTAATTT GTTGTTTATTGTAGGTTGGACCGCGGCCAAATCGACTGGCAAAAAATGTC CTCACGCTGCGGCGAAGGGAAGGTGAGGAAAGTGGTAATTTATAACTTAT ATTTCGGGCCGTTTCTATCGAGCG
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig8037:7472..9395+

>mRNA_S-dermatodea_contig8037.16222.1 ID=mRNA_S-dermatodea_contig8037.16222.1|Name=mRNA_S-dermatodea_contig8037.16222.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1506bp|location=Sequence derived from alignment at S-dermatodea_contig8037:7472..9395+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGATGAATCGCATGGGCTACCGGCGTGGGGAAGGGCTTGGAAAGGAGAA
GCAGATGATGAATCGCATGGGCTACCGGCGTGGGGAAGGGCTTGGAAAGG
AGAAGCAGGGCATCGCCCGCCCGGTGCCCATTCGAGTTCTGCCGGAGCGA
CGGGCCTTGGACCACCTCAGAGTGGACGGGGGCGGCGGCGGCGGCGCTCC
GGGGGCAGGCGCTCGCAAGCACAAGTCGAAACCCGGGGCGGCATCTTCAC
TGGACACCCACGAGCCGCAGAAGGCCATGTTCGACTTCCTCAACGTCACG
ATACACGCGTCCGCGAAAGGCAAGGTCGGCCCCGGCAATAATTCCCTGCG
TCCGGTAAGCCAGGCACGGCCGAGCCTCGCGGGCAGAAGGCCGGTTTTCG
ACGGGGCCTCGCGGGCTGGATCGGGAGGAGGAGGAGGGGGCGGGGGAGGA
GAGAGAAAGGGCTCGGCCGAAGGGGGTGCGGTGGGCAGTGCGTCGGCAGC
CGGAAACGGTGCCGCGCCGGCGAAGAATGCGGCGGACATGTCGCGGTCCG
AGCTTCGGTCGCACGTTGTCGGGGCGCGGGAGGCGGAGGTCGCGTTGGCC
GCGAAGGTGGCGCGCTTGGAGGAGACTGTCGAGCGAAACTCGGAGCGAGA
CCCGAGGATAGCCGCGGCGGCGAGGCAGAAGCTTGAGGAGATCCGGGCGC
AGGGTCGACAGGTCCGGGCTAGCAGGGATCGGGCGGAGAGGGTGCTGGGA
GATCGGGGGAGTAGCAAGGGGAAAGGGGGTGGGAAGGGCGGCCTGTTTTC
CTTCTGAGGCATCGCCCGCCCGGTGCCCATTCGAGTTCTGCCGGAGCGAC
GGGCCTTGGACCACCTCAGAGTGGACGGGGGCGGCGGCGGCGGCGCTCCG
GGGGCAGGCGCTCGCAAGCACAAGTCGAAACCCGGGGCGGCATCTTCACT
GGACACCCACGAGCCGCAGAAGGCCATGTTCGACTTCCTCAACGTCACGA
TACACGCGTCCGCGAAAGGCAAGGTCGGCCCCGGCAATAATTCCCTGCGT
CCGGTAAGCCAGGCACGGCCGAGCCTCGCGGGCAGAAGGCCGGTTTTCGA
CGGGGCCTCGCGGGCTGGATCGGGAGGAGGAGGAGGGGGCGGGGGAGGAG
AGAGAAAGGGCTCGGCCGAAGGGGGTGCGGTGGGCAGTGCGTCGGCAGCC
GGAAACGGTGCCGCGCCGGCGAAGAATGCGGCGGACATGTCGCGGTCCGA
GCTTCGGTCGCACGTTGTCGGGGCGCGGGAGGCGGAGGTCGCGTTGGCCG
CGAAGGTGGCGCGCTTGGAGGAGACTGTCGAGCGAAACTCGGAGCGAGAC
CCGAGGATAGCCGCGGCGGCGAGGCAGAAGCTTGAGGAGATCCGGGCGCA
GGGTCGACAGGTCCGGGCTAGCAGGGATCGGGCGGAGAGGGTGCTGGGAG
ATCGGGGGAGTAGCAAGGGGAAAGGGGGTGGGAAGGGCGGCCTGTTTTCC
TTCTGA
back to top