mRNA_S-dermatodea_contig12266.1424.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12266.1424.1
Unique NamemRNA_S-dermatodea_contig12266.1424.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5KDX7_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDX7_9PHAE)

HSP 1 Score: 327 bits (837), Expect = 1.360e-102
Identity = 158/233 (67.81%), Postives = 185/233 (79.40%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKV 1295
            DYHA+MTD+MFME LE RL+PA+  +  F  K+MILVLDNASYHHGFD EV+VPE+N+KK+NVDLLR FGA++I V+RK+     GV E++ EVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS  FE+ RKM EVW QIR GWYGD+ W GQEGGWK ANCSKLV HAIGEMNKWVKD ++V
Sbjct:  246 DYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAKSIRVRRKEGEQ--GVVEYNLEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVQIRKGWYGDKAWPGQEGGWKAANCSKLVDHAIGEMNKWVKDRDEV 474          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5KIM5_9PHAE (DDE_3 domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIM5_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 1.390e-102
Identity = 162/235 (68.94%), Postives = 188/235 (80.00%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            DYHA+MTD+MFME LE RL+PA+  +  F  K+MILVLDNASYHHGFD EV+VPETN+KK+NVDLLR FGA++I V+RK+     GV E++FEVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W GQEGGWK A+CSKLV HAIGEMNKWVKD + VLS
Sbjct:  363 DYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQ--GVVEYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLS 593          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5KHE7_9PHAE (DDE_3 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE7_9PHAE)

HSP 1 Score: 322 bits (824), Expect = 3.530e-102
Identity = 157/235 (66.81%), Postives = 185/235 (78.72%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            DYHA+MTD+MFME LE RL PA+  +  F  K+MILVLDNASYHHGFD +V++PE+N+KK+NVDLLR FGA++I VKRK+    +    ++FEVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W GQEGGWK A+CSKLV HAIGEMNKWVKD + VLS
Sbjct:   93 DYHAAMTDSMFMEWLEHRLNPAYNAIPEFKGKRMILVLDNASYHHGFDAQVKLPESNTKKHNVDLLRMFGAKSIRVKRKEGEQGV----YNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLS 321          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5K024_9PHAE (DDE_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K024_9PHAE)

HSP 1 Score: 327 bits (839), Expect = 3.740e-102
Identity = 160/235 (68.09%), Postives = 187/235 (79.57%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            D+HA+MTD+MFME LE RL+PA+  +  F  K+MILVLDNASYHHGFD EV+VPETN+KK+NVDLLR FGA++I V+RK+     GV E++ EVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W GQEGGWK A+CSKLV HAIGEMNKWVKD + VLS
Sbjct:  262 DHHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQ--GVVEYNLEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLS 492          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: D8LNM6_ECTSI (DDE_3 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LNM6_ECTSI)

HSP 1 Score: 331 bits (848), Expect = 6.620e-102
Identity = 162/235 (68.94%), Postives = 188/235 (80.00%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            DYHA+MTD+MFME LE RL+PA+  +  F  KKMILVLDNASYHHGFD EV+VPETN+KK+NVDLLRKFGA++I VKRK+     G  E +FEVP E GS+FP       GGVS+ EVA ATREY++L++P +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W+GQEGGWK ANCSKLV HAIGEMNKWV+D +  LS
Sbjct:  397 DYHAAMTDSMFMEWLEHRLSPAYNAIPEFEGKKMILVLDNASYHHGFDAEVKVPETNTKKHNVDLLRKFGAKSIRVKRKEGEQ--GFVEHNFEVPSEPGSSFPAGNRE--GGVSRAEVATATREYIRLNYPERLEERVVTFMKKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRQGWYGDKEWSGQEGGWKAANCSKLVEHAIGEMNKWVRDRDAGLS 627          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5JR41_9PHAE (DDE_3 domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR41_9PHAE)

HSP 1 Score: 328 bits (842), Expect = 2.760e-101
Identity = 161/235 (68.51%), Postives = 187/235 (79.57%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            DYHA+MTD+MFME LE RL+PA+  +  F  K+MILVLDNASYHHGF  EV+VPETN+KK+NVDLLR FGA++I V+RK+     GV E++FEVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W GQEGGWK A+CSKLV HAIGEMNKWVKD + VLS
Sbjct:  373 DYHAAMTDSMFMEWLEHRLSPAYNAIPEFKGKRMILVLDNASYHHGFVSEVKVPETNTKKHNVDLLRMFGAKSIRVRRKEGEQ--GVVEYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVDHAIGEMNKWVKDRDGVLS 603          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: D8LQ25_ECTSI (Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LQ25_ECTSI)

HSP 1 Score: 312 bits (800), Expect = 4.820e-95
Identity = 153/227 (67.40%), Postives = 179/227 (78.85%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKLFGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVA--EFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWV 1277
            DYH +MTD MFME LERRLAPAFK  +G+KKMILVLDNASYHHG+D EV VPE+NSK YN  LLRK+  + ITV+R+ T+ + GV   ++ F+VP  A  TFP A S    GVS  EVA+ATR + QL HPTKL+E+VE FM G+GW+LIWTPPYMP+FQPIELFWQHGK YVSFNF+  R M EVW Q+R GWYGD  W GQ+GGWKPA+CSKLVAHA+ EMNKWV
Sbjct:  367 DYHDAMTDKMFMEWLERRLAPAFKAKYGNKKMILVLDNASYHHGYDAEVGVPESNSKGYNTALLRKYKCRKITVEREVTS-SAGVRSKKYTFQVP--ATGTFPQANSKCGKGVSGPEVALATRAFFQLKHPTKLMEKVETFMNGRGWQLIWTPPYMPSFQPIELFWQHGKQYVSFNFKTKRTMAEVWAQVRKGWYGDPTWEGQKGGWKPADCSKLVAHAVKEMNKWV 590          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5KF39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF39_9PHAE)

HSP 1 Score: 288 bits (738), Expect = 1.170e-89
Identity = 139/204 (68.14%), Postives = 161/204 (78.92%), Query Frame = 3
Query:  690 KKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            K++I VLDNASYHHGFD EV+VPETN+KK+NVDLLR FGA+++ V+RK+     GV E++FEVP E GS+FP       GGVS+ EVA ATREY+ L+HP +L ERV  FM+ KGW LIWTPPYMP+FQPIELFWQHGK YVS NFE+ RKM EVW QIR GWYGD+ W GQEGGWK A+CSKLV HAI EM KWVKD   VLS
Sbjct:   97 KRIIFVLDNASYHHGFDAEVKVPETNTKKHNVDLLRMFGAKSMRVRRKEGEQ--GVVEYNFEVPTEPGSSFPAGNRE--GGVSRAEVATATREYIHLNHPERLEERVVTFMRKKGWALIWTPPYMPSFQPIELFWQHGKQYVSLNFELKRKMREVWVQIRKGWYGDKEWPGQEGGWKAADCSKLVHHAIREMKKWVKDRNGVLS 296          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5JZ34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ34_9PHAE)

HSP 1 Score: 281 bits (719), Expect = 7.250e-88
Identity = 143/230 (62.17%), Postives = 170/230 (73.91%), Query Frame = 3
Query:  618 MTDAMFMESLERRLAPAFKKL--FGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLS 1301
            MTD+MFME LE RL P +  +  F  K++IL+LDNASYHHGFD EV+VPE+N+KK+NVDLLR FGAQ+I VKRK+     GV E++FEVP E GS+FP       GGVS+  VA ATREY+ L+HP +L +RV   ++        TPPYMP+FQPIELFWQHGK YVS  FE+ RKM EVW  IR GWYGD+ W GQEGGWK ANCSKLV HA+ EMNKWVKD + VLS
Sbjct:    1 MTDSMFMEWLEHRLNPGYNTIPEFKGKRIILILDNASYHHGFDAEVKVPESNTKKHNVDLLRMFGAQSIRVKRKEGEQ--GVVEYNFEVPTEPGSSFPAGNRE--GGVSRAGVATATREYIHLNHPERLEQRVGGVVEYN----FETPPYMPSFQPIELFWQHGKQYVSLKFELKRKMREVWVPIRKGWYGDKEWPGQEGGWKAANCSKLVDHALREMNKWVKDRDGVLS 222          
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Match: A0A6H5KCN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCN2_9PHAE)

HSP 1 Score: 288 bits (737), Expect = 3.010e-87
Identity = 139/225 (61.78%), Postives = 167/225 (74.22%), Query Frame = 3
Query:  603 DYHASMTDAMFMESLERRLAPAFKKLFGDKKMILVLDNASYHHGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEVPQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQGKGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGWYGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWV 1277
            DYH +MTD MFM+ L+ RL PAF   F +KKM LVLDNASYHH FDEEV+VPETNSKKYNV+LLRK+G  +  V R+        AE++FEVP +   + P A   +  GVSKEE+A  TR Y + + P KL E+ E +M+ KGW LIWTPPYMPTFQPIELFWQHGK YVS +FE GR + +VW+QIRLGWYGD  W GQEGGWK ANC KLV HAIG+M++W+
Sbjct:  250 DYHNAMTDGMFMQWLKHRLTPAFDAQFKNKKMFLVLDNASYHHCFDEEVKVPETNSKKYNVELLRKYGCTSFKVTRESEGK---AAEYNFEVPAQG--SLPNANRKN--GVSKEEIASVTRTYFKKNFPQKLEEKAETYMREKGWGLIWTPPYMPTFQPIELFWQHGKHYVSIHFEKGRNILDVWKQIRLGWYGDPEWDGQEGGWKAANCGKLVQHAIGKMDEWI 467          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12266.1424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KDX7_9PHAE1.360e-10267.81DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KIM5_9PHAE1.390e-10268.94DDE_3 domain-containing protein n=4 Tax=Ectocarpus... [more]
A0A6H5KHE7_9PHAE3.530e-10266.81DDE_3 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5K024_9PHAE3.740e-10268.09DDE_3 domain-containing protein n=1 Tax=Ectocarpus... [more]
D8LNM6_ECTSI6.620e-10268.94DDE_3 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JR41_9PHAE2.760e-10168.51DDE_3 domain-containing protein n=5 Tax=Ectocarpus... [more]
D8LQ25_ECTSI4.820e-9567.40Transposase n=3 Tax=Ectocarpus TaxID=2879 RepID=D8... [more]
A0A6H5KF39_9PHAE1.170e-8968.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZ34_9PHAE7.250e-8862.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KCN2_9PHAE3.010e-8761.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12266contigS-dermatodea_contig12266:4810..6984 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeOpisthokonta
Seed ortholog score61.2
Seed ortholog evalue9.6e-07
Seed eggNOG ortholog946362.XP_004988920.1
EggNOG OGs2D5ST@1,2SZIE@2759,38F03@33154
Best tax levelOpisthokonta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size1664
Cds size930
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12266.1424.1prot_S-dermatodea_contig12266.1424.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12266 5899..6828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.6337383-UTR-S-dermatodea_contig12266:4809..52661622924240.6337383-UTR-S-dermatodea_contig12266:4809..5266Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 4810..5266 +
1694079117.8698843-UTR-S-dermatodea_contig12266:4809..52661694079117.8698843-UTR-S-dermatodea_contig12266:4809..5266Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 4810..5266 +
1622924240.6428096-UTR-S-dermatodea_contig12266:5777..58981622924240.6428096-UTR-S-dermatodea_contig12266:5777..5898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 5778..5898 +
1694079117.8801062-UTR-S-dermatodea_contig12266:5777..58981694079117.8801062-UTR-S-dermatodea_contig12266:5777..5898Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 5778..5898 +
1622924240.6698084-UTR-S-dermatodea_contig12266:6828..69841622924240.6698084-UTR-S-dermatodea_contig12266:6828..6984Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 6829..6984 +
1694079117.897938-UTR-S-dermatodea_contig12266:6828..69841694079117.897938-UTR-S-dermatodea_contig12266:6828..6984Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12266 6829..6984 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924240.6527288-CDS-S-dermatodea_contig12266:5898..68281622924240.6527288-CDS-S-dermatodea_contig12266:5898..6828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12266 5899..6828 +
1694079117.8884926-CDS-S-dermatodea_contig12266:5898..68281694079117.8884926-CDS-S-dermatodea_contig12266:5898..6828Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12266 5899..6828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12266.1424.1

>prot_S-dermatodea_contig12266.1424.1 ID=prot_S-dermatodea_contig12266.1424.1|Name=mRNA_S-dermatodea_contig12266.1424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=310bp
MDDCALHRDYHASMTDAMFMESLERRLAPAFKKLFGDKKMILVLDNASYH
HGFDEEVRVPETNSKKYNVDLLRKFGAQNITVKRKQTAPNLGVAEFHFEV
PQEAGSTFPGARSVSVGGVSKEEVAIATREYLQLHHPTKLIERVEAFMQG
KGWELIWTPPYMPTFQPIELFWQHGKAYVSFNFEMGRKMHEVWEQIRLGW
YGDEGWAGQEGGWKPANCSKLVAHAIGEMNKWVKDLEKVLSVVRWVLLLS
PLGMTRMTSLGPMMLKTEWLTRCSRKARRICGEKSTLLAMLRLNDNITFN
SLREQRSII*
back to top

mRNA from alignment at S-dermatodea_contig12266:4810..6984+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12266.1424.1 ID=mRNA_S-dermatodea_contig12266.1424.1|Name=mRNA_S-dermatodea_contig12266.1424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2175bp|location=Sequence derived from alignment at S-dermatodea_contig12266:4810..6984+ (Saccorhiza dermatodea SderLu1190fm monoicous)
AGACGCCCGCTCGAAGCAGGGGGTCTCGAGTATGACGAAACCGAAGGGCA CCAAGAGGCCCACAGGAGGTGCAGTCGGAAACCACTCAAGCGCAAGGAAG CGCGCCATGATTCAACCTGCGCAAGATGCCAACGCTCTCAAAAGCCTGGC AACTGCGTTAGATGTACGGGAGAAACAACTCAAGACAGAGCGGGAAGCAC TCGAGGAGGAGCGGCGTGTGATGACGGCAGCGCTCGACGAGCGGCAGGCG GAGTTGGACAAACGAGATGAGGATGCCGCAGCTGATAAGACTCGCAAACC CGCCGAGGTAGCGCGTATGAAAGCCGCTGCTGACCAAGTGGATAGGTTGG CACCGAGGCAGGGCGAGCTCCTGACCATCGCCGAGTCGCGGACAATCCTC ATGCTGTACTTTGGGCTCGTGAGTGATGGAACCAGCCCCAACCAGGCAGC TATCAAGGTCAGTTTGTTTGGGTCTCTTCTGCATGGCTTATCGTAGAGAG CGTCTTGAATCACATCAGTCTCTATCGCATCGCTACAGCAGCAATGACTG CTGTTCATACAGTGTCGTTCACATGATACAGTATAAGACTATATAAACAG TATACTGCTGTATGATATGCATGCACGTAAACTGCTGTACACAGCAGTAA TAAAGAGTTTACACACAGCATCAGCTCGCTGGTATGATATGACTGCTGTA CGATATGGCTCCTGTTACTGTATGACTGCTGTATGGGCTGCATGTAAGGC TGCTGTTACTGTATGTAGCGGTATTACTGCTGCATGACTGCTGTATGACT GCTGTGGCGACTGCTGTTGTGTCGCTGCGGGACTGCGGGATGTACATATC ACAGCTGTTTTACTGCTGCATCTTACGCTGTTGCGGTATATGCATATGCA TGTGGTACATTGATGGGAGGTTTGCTGTCTGAACTGGCGGTCCCGATACT CTGCCGCATTGTAAACAGGTGGCGTCCACCCTCAGGATAGGGAGGAAAAA GGTGACCGCGGTTTGCCAGTGTTGGGAGGATCACGAGGCATTTCTCGAGG TCAGCGGCAAGGGACGAGGCAAGGTCAACGGGGTGGACGATGGACGACTG TGCGTTACACCGCGATTACCACGCGTCAATGACTGATGCAATGTTCATGG AGAGCCTCGAACGCCGCCTTGCACCAGCTTTCAAGAAGCTGTTCGGCGAT AAGAAGATGATCCTCGTTCTTGATAACGCTTCATACCACCACGGCTTTGA CGAGGAGGTCAGGGTTCCTGAAACCAACAGCAAGAAGTACAACGTCGACT TGTTGCGTAAGTTCGGGGCACAGAACATCACAGTAAAGCGTAAGCAGACG GCACCCAACCTTGGCGTTGCTGAGTTTCACTTTGAGGTTCCACAAGAGGC TGGGTCAACGTTTCCCGGGGCGAGATCGGTATCGGTAGGGGGTGTAAGCA AAGAGGAGGTCGCAATCGCTACTCGCGAGTACTTGCAGCTTCACCACCCT ACCAAACTCATTGAGCGGGTGGAGGCGTTCATGCAGGGTAAGGGATGGGA GTTGATTTGGACACCCCCGTACATGCCGACGTTCCAGCCGATCGAGTTGT TTTGGCAGCATGGTAAGGCGTATGTCAGCTTCAATTTTGAGATGGGGCGA AAGATGCACGAGGTCTGGGAGCAGATTCGCCTGGGTTGGTACGGGGACGA GGGGTGGGCAGGACAGGAGGGGGGGTGGAAGCCAGCCAATTGTTCGAAGT TGGTGGCTCATGCCATTGGCGAGATGAACAAGTGGGTTAAGGACCTTGAG AAGGTGCTGAGTGTGGTACGATGGGTGCTCTTGTTGTCCCCCCTGGGTAT GACAAGGATGACATCTCTCGGGCCGATGATGCTGAAGACGGAGTGGTTGA CGAGATGTTCCAGGAAGGCTCGGAGGATTTGTGGGGAGAAGTCGACGCTA CTGGCGATGCTGAGGTTGAATGATAATATCACATTCAACAGTCTGCGGGA GCAACGAAGTATAATATAAAGTATCATCTGGGGCTGTTGCAGTATTGATT GCTTGTGTAAAGCGCGTTGTATGATAGGGCGACTACTCTTCATTTTGGGG AAAATCATTTATTTTTCCAATTCCAATTTTCAAATTGGTTTTCATCTCGG GCAATTCCCGAGCTCTTCACCGATT
back to top

Coding sequence (CDS) from alignment at S-dermatodea_contig12266:4810..6984+

>mRNA_S-dermatodea_contig12266.1424.1 ID=mRNA_S-dermatodea_contig12266.1424.1|Name=mRNA_S-dermatodea_contig12266.1424.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1860bp|location=Sequence derived from alignment at S-dermatodea_contig12266:4810..6984+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGACGACTGTGCGTTACACCGCGATTACCACGCGTCAATGACTGATGC
AATGTTCATGGAGAGCCTCGAACGCCGCCTTGCACCAGCTTTCAAGAAGC
TGTTCGGCGATAAGAAGATGATCCTCGTTCTTGATAACGCTTCATACCAC
CACGGCTTTGACGAGGAGGTCAGGGTTCCTGAAACCAACAGCAAGAAGTA
CAACGTCGACTTGTTGCGTAAGTTCGGGGCACAGAACATCACAGTAAAGC
GTAAGCAGACGGCACCCAACCTTGGCGTTGCTGAGTTTCACTTTGAGGTT
CCACAAGAGGCTGGGTCAACGTTTCCCGGGGCGAGATCGGTATCGGTAGG
GGGTGTAAGCAAAGAGGAGGTCGCAATCGCTACTCGCGAGTACTTGCAGC
TTCACCACCCTACCAAACTCATTGAGCGGGTGGAGGCGTTCATGCAGGGT
AAGGGATGGGAGTTGATTTGGACACCCCCGTACATGCCGACGTTCCAGCC
GATCGAGTTGTTTTGGCAGCATGGTAAGGCGTATGTCAGCTTCAATTTTG
AGATGGGGCGAAAGATGCACGAGGTCTGGGAGCAGATTCGCCTGGGTTGG
TACGGGGACGAGGGGTGGGCAGGACAGGAGGGGGGGTGGAAGCCAGCCAA
TTGTTCGAAGTTGGTGGCTCATGCCATTGGCGAGATGAACAAGTGGGTTA
AGGACCTTGAGAAGGTGCTGAGTGTGGTACGATGGGTGCTCTTGTTGTCC
CCCCTGGGTATGACAAGGATGACATCTCTCGGGCCGATGATGCTGAAGAC
GGAGTGGTTGACGAGATGTTCCAGGAAGGCTCGGAGGATTTGTGGGGAGA
AGTCGACGCTACTGGCGATGCTGAGGTTGAATGATAATATCACATTCAAC
AGTCTGCGGGAGCAACGAAGTATAATATAAATGGACGACTGTGCGTTACA
CCGCGATTACCACGCGTCAATGACTGATGCAATGTTCATGGAGAGCCTCG
AACGCCGCCTTGCACCAGCTTTCAAGAAGCTGTTCGGCGATAAGAAGATG
ATCCTCGTTCTTGATAACGCTTCATACCACCACGGCTTTGACGAGGAGGT
CAGGGTTCCTGAAACCAACAGCAAGAAGTACAACGTCGACTTGTTGCGTA
AGTTCGGGGCACAGAACATCACAGTAAAGCGTAAGCAGACGGCACCCAAC
CTTGGCGTTGCTGAGTTTCACTTTGAGGTTCCACAAGAGGCTGGGTCAAC
GTTTCCCGGGGCGAGATCGGTATCGGTAGGGGGTGTAAGCAAAGAGGAGG
TCGCAATCGCTACTCGCGAGTACTTGCAGCTTCACCACCCTACCAAACTC
ATTGAGCGGGTGGAGGCGTTCATGCAGGGTAAGGGATGGGAGTTGATTTG
GACACCCCCGTACATGCCGACGTTCCAGCCGATCGAGTTGTTTTGGCAGC
ATGGTAAGGCGTATGTCAGCTTCAATTTTGAGATGGGGCGAAAGATGCAC
GAGGTCTGGGAGCAGATTCGCCTGGGTTGGTACGGGGACGAGGGGTGGGC
AGGACAGGAGGGGGGGTGGAAGCCAGCCAATTGTTCGAAGTTGGTGGCTC
ATGCCATTGGCGAGATGAACAAGTGGGTTAAGGACCTTGAGAAGGTGCTG
AGTGTGGTACGATGGGTGCTCTTGTTGTCCCCCCTGGGTATGACAAGGAT
GACATCTCTCGGGCCGATGATGCTGAAGACGGAGTGGTTGACGAGATGTT
CCAGGAAGGCTCGGAGGATTTGTGGGGAGAAGTCGACGCTACTGGCGATG
CTGAGGTTGAATGATAATATCACATTCAACAGTCTGCGGGAGCAACGAAG
TATAATATAA
back to top