mRNA_S-dermatodea_contig12234.1400.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12234.1400.1
Unique NamemRNA_S-dermatodea_contig12234.1400.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12234.1400.1 vs. uniprot
Match: A0A2V0NYS1_9CHLO (Uncharacterized protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NYS1_9CHLO)

HSP 1 Score: 51.6 bits (122), Expect = 2.970e-5
Identity = 23/31 (74.19%), Postives = 24/31 (77.42%), Query Frame = 1 
Query:    1 AREHQCAWDEDTCYAAAGGGHLAVLEWARGQ 93
            AR   CAW EDTC  AAGGGHLAVL+WAR Q
Sbjct:  135 ARALGCAWGEDTCSFAAGGGHLAVLQWARAQ 165
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12234.1400.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V0NYS1_9CHLO2.970e-574.19Uncharacterized protein n=1 Tax=Raphidocelis subca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12234contigS-dermatodea_contig12234:4354..4698 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-26_003640.1
Exons1
Model size345
Cds size345
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924238.4359608-CDS-S-dermatodea_contig12234:4353..46981622924238.4359608-CDS-S-dermatodea_contig12234:4353..4698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12234 4354..4698 -
1694079116.229-CDS-S-dermatodea_contig12234:4353..46981694079116.229-CDS-S-dermatodea_contig12234:4353..4698Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12234 4354..4698 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12234.1400.1prot_S-dermatodea_contig12234.1400.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12234 4354..4698 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12234.1400.1

>prot_S-dermatodea_contig12234.1400.1 ID=prot_S-dermatodea_contig12234.1400.1|Name=mRNA_S-dermatodea_contig12234.1400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=115bp
AREHQCAWDEDTCYAAAGGGHLAVLEWARGQGCPWSPDVCRAAAEGGHLE
VLQWLRKKGCPWDSGTCSGAAKCGHLQVLRWARGQGCPWDEVTCSRAASR
GHLGVLQWLRAAGCP
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mRNA from alignment at S-dermatodea_contig12234:4354..4698-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12234.1400.1 ID=mRNA_S-dermatodea_contig12234.1400.1|Name=mRNA_S-dermatodea_contig12234.1400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at S-dermatodea_contig12234:4354..4698- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAGAGAACACCAATGTGCGTGGGATGAAGACACGTGCTACGCGGCGGC
AGGTGGCGGCCATTTGGCGGTTCTTGAGTGGGCTAGAGGGCAGGGATGCC
CGTGGAGCCCCGACGTTTGCCGCGCGGCAGCGGAGGGGGGTCATTTAGAG
GTTCTACAGTGGCTGAGGAAGAAAGGGTGCCCGTGGGATAGCGGCACGTG
CAGTGGTGCTGCCAAATGCGGACACCTGCAGGTGCTCCGATGGGCACGAG
GGCAGGGATGTCCGTGGGACGAGGTAACATGCAGCCGGGCTGCGAGTCGC
GGGCACCTCGGGGTTCTGCAGTGGCTGAGGGCGGCGGGGTGCCCG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12234:4354..4698-

>mRNA_S-dermatodea_contig12234.1400.1 ID=mRNA_S-dermatodea_contig12234.1400.1|Name=mRNA_S-dermatodea_contig12234.1400.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=690bp|location=Sequence derived from alignment at S-dermatodea_contig12234:4354..4698- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCAGAGAACACCAATGTGCGTGGGATGAAGACACGTGCTACGCGGCGGC
AGGTGGCGGCCATTTGGCGGTTCTTGAGTGGGCTAGAGGGCAGGGATGCC
CGTGGAGCCCCGACGTTTGCCGCGCGGCAGCGGAGGGGGGTCATTTAGAG
GTTCTACAGTGGCTGAGGAAGAAAGGGTGCCCGTGGGATAGCGGCACGTG
CAGTGGTGCTGCCAAATGCGGACACCTGCAGGTGCTCCGATGGGCACGAG
GGCAGGGATGTCCGTGGGACGAGGTAACATGCAGCCGGGCTGCGAGTCGC
GGGCACCTCGGGGTTCTGCAGTGGCTGAGGGCGGCGGGGTGCCCGGCCAG
AGAACACCAATGTGCGTGGGATGAAGACACGTGCTACGCGGCGGCAGGTG
GCGGCCATTTGGCGGTTCTTGAGTGGGCTAGAGGGCAGGGATGCCCGTGG
AGCCCCGACGTTTGCCGCGCGGCAGCGGAGGGGGGTCATTTAGAGGTTCT
ACAGTGGCTGAGGAAGAAAGGGTGCCCGTGGGATAGCGGCACGTGCAGTG
GTGCTGCCAAATGCGGACACCTGCAGGTGCTCCGATGGGCACGAGGGCAG
GGATGTCCGTGGGACGAGGTAACATGCAGCCGGGCTGCGAGTCGCGGGCA
CCTCGGGGTTCTGCAGTGGCTGAGGGCGGCGGGGTGCCCG
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