mRNA_S-dermatodea_contig1222.1390.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1222.1390.1
Unique NamemRNA_S-dermatodea_contig1222.1390.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: D7FTW8_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTW8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 4.780e-15
Identity = 30/38 (78.95%), Postives = 35/38 (92.11%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW 114
            GKREW G+W +KS++WSDSVR ELGWS+KNDGTFWMTW
Sbjct:  487 GKREWIGDWGEKSEKWSDSVRAELGWSEKNDGTFWMTW 524          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A6H5JHG4_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHG4_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 7.930e-14
Identity = 28/38 (73.68%), Postives = 34/38 (89.47%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW 114
            GKREW G+W +KS++WSD VR ELGWS++NDGTFWMTW
Sbjct:  123 GKREWIGDWGEKSEKWSDRVRAELGWSEQNDGTFWMTW 160          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A5B8MKZ2_9CHLO (Calpain-type cysteine proteinase n=2 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MKZ2_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 8.260e-9
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW 114
            G+REW G+WSDKSD+W+ ++  +LG ++KNDGTFWM++
Sbjct:  455 GQREWLGDWSDKSDKWTSTLHAKLGRTEKNDGTFWMSY 492          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A7S3FQR2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S3FQR2_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 1.550e-8
Identity = 22/38 (57.89%), Postives = 32/38 (84.21%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW 114
            GKREW G++SD+S++W++++R  LG + KNDGTFWM W
Sbjct:  474 GKREWNGDFSDESEKWTNALRARLGKTSKNDGTFWMPW 511          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: I7MG72_TETTS (Calpain family cysteine protease n=1 Tax=Tetrahymena thermophila (strain SB210) TaxID=312017 RepID=I7MG72_TETTS)

HSP 1 Score: 54.3 bits (129), Expect = 1.890e-7
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMT 111
            G +EWTG+WSD SD+W+  +R+ L    KNDGTFWM+
Sbjct:  339 GMKEWTGDWSDNSDKWNPVLRQRLNVESKNDGTFWMS 375          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A1J4K3M5_9EUKA (Calpain catalytic domain-containing protein n=1 Tax=Tritrichomonas foetus TaxID=1144522 RepID=A0A1J4K3M5_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 9.030e-7
Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWM 108
            G  EWTG++SD SD+W++S+++ELG+   NDG FWM
Sbjct:  272 GNFEWTGDYSDTSDKWTESLKKELGFENSNDGAFWM 307          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A7S3DFV8_9EUKA (Hypothetical protein n=7 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DFV8_9EUKA)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 21/40 (52.50%), Postives = 29/40 (72.50%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSD--SVREELGWSKKNDGTFWMTW 114
            G++EW G+WSDKS++W    +V++ L    KNDGTFWM W
Sbjct:  785 GRKEWQGDWSDKSEKWRKYPAVKKTLNHEDKNDGTFWMAW 824          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: UPI0004F4711C (calpain-like cysteine peptidase n=1 Tax=Trypanosoma grayi TaxID=71804 RepID=UPI0004F4711C)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 24/37 (64.86%), Postives = 25/37 (67.57%), Query Frame = 1
Query:   10 EWTGEWSDKSDRWSDS--VREELGWSKKNDGTFWMTW 114
            EWTG WSDKSD+W     VR     SKKNDGTFWM W
Sbjct:  461 EWTGAWSDKSDKWKSHPLVRRACKPSKKNDGTFWMEW 497          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A7S1QAZ2_NEODS (Hypothetical protein n=1 Tax=Neobodo designis TaxID=312471 RepID=A0A7S1QAZ2_NEODS)

HSP 1 Score: 51.6 bits (122), Expect = 1.690e-6
Identity = 18/35 (51.43%), Postives = 26/35 (74.29%), Query Frame = 1
Query:   10 EWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW 114
            EW G WSD SD+W+  +++E+G+   +DGTFWM W
Sbjct:  202 EWNGAWSDDSDKWTQEIKDEVGFYAGDDGTFWMAW 236          
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Match: A0A077ZPJ5_STYLE (Calpain family cysteine protease containing protein n=1 Tax=Stylonychia lemnae TaxID=5949 RepID=A0A077ZPJ5_STYLE)

HSP 1 Score: 51.2 bits (121), Expect = 2.310e-6
Identity = 19/37 (51.35%), Postives = 31/37 (83.78%), Query Frame = 1
Query:    1 GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMT 111
            G +EWTG+WSDKSD+W+ +++E+LG+  K DG F+++
Sbjct:  283 GFKEWTGDWSDKSDKWTPALKEKLGYEDKEDGVFFIS 319          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1222.1390.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D7FTW8_ECTSI4.780e-1578.95Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A6H5JHG4_9PHAE7.930e-1473.68Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A5B8MKZ2_9CHLO8.260e-957.89Calpain-type cysteine proteinase n=2 Tax=Chloropic... [more]
A0A7S3FQR2_9CHLO1.550e-857.89Hypothetical protein n=1 Tax=Chloropicon roscoffen... [more]
I7MG72_TETTS1.890e-756.76Calpain family cysteine protease n=1 Tax=Tetrahyme... [more]
A0A1J4K3M5_9EUKA9.030e-755.56Calpain catalytic domain-containing protein n=1 Ta... [more]
A0A7S3DFV8_9EUKA1.690e-652.50Hypothetical protein n=7 Tax=Palpitomonas bilix Ta... [more]
UPI0004F4711C1.690e-664.86calpain-like cysteine peptidase n=1 Tax=Trypanosom... [more]
A0A7S1QAZ2_NEODS1.690e-651.43Hypothetical protein n=1 Tax=Neobodo designis TaxI... [more]
A0A077ZPJ5_STYLE2.310e-651.35Calpain family cysteine protease containing protei... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1222contigS-dermatodea_contig1222:21460..21573 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.6
Seed ortholog evalue2.7e-12
Seed eggNOG ortholog2880.D7FTW8
KEGG koko:K08582
EggNOG free text desc.calcium-dependent cysteine-type endopeptidase activity
EggNOG OGsKOG0045@1,KOG0045@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size114
Cds size114
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924237.7378995-CDS-S-dermatodea_contig1222:21459..215731622924237.7378995-CDS-S-dermatodea_contig1222:21459..21573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1222 21460..21573 -
1694079115.7596598-CDS-S-dermatodea_contig1222:21459..215731694079115.7596598-CDS-S-dermatodea_contig1222:21459..21573Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1222 21460..21573 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1222.1390.1prot_S-dermatodea_contig1222.1390.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1222 21460..21573 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1222.1390.1

>prot_S-dermatodea_contig1222.1390.1 ID=prot_S-dermatodea_contig1222.1390.1|Name=mRNA_S-dermatodea_contig1222.1390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=38bp
GKREWTGEWSDKSDRWSDSVREELGWSKKNDGTFWMTW
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mRNA from alignment at S-dermatodea_contig1222:21460..21573-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1222.1390.1 ID=mRNA_S-dermatodea_contig1222.1390.1|Name=mRNA_S-dermatodea_contig1222.1390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at S-dermatodea_contig1222:21460..21573- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAAACGCGAGTGGACGGGAGAGTGGTCCGACAAATCCGACAGGTGGAG CGACAGCGTTCGGGAGGAGCTGGGATGGAGCAAAAAGAACGACGGGACGT TTTGGATGACGTGG
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Coding sequence (CDS) from alignment at S-dermatodea_contig1222:21460..21573-

>mRNA_S-dermatodea_contig1222.1390.1 ID=mRNA_S-dermatodea_contig1222.1390.1|Name=mRNA_S-dermatodea_contig1222.1390.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at S-dermatodea_contig1222:21460..21573- (Saccorhiza dermatodea SderLu1190fm monoicous)
GGTAAACGCGAGTGGACGGGAGAGTGGTCCGACAAATCCGACAGGTGGAG
CGACAGCGTTCGGGAGGAGCTGGGATGGAGCAAAAAGAACGACGGGACGT
TTTGGATGACGTGGGGTAAACGCGAGTGGACGGGAGAGTGGTCCGACAAA
TCCGACAGGTGGAGCGACAGCGTTCGGGAGGAGCTGGGATGGAGCAAAAA
GAACGACGGGACGTTTTGGATGACGTGG
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