mRNA_S-dermatodea_contig12188.1367.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12188.1367.1
Unique NamemRNA_S-dermatodea_contig12188.1367.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A6H5KF81_9PHAE (Arf-GAP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KF81_9PHAE)

HSP 1 Score: 401 bits (1031), Expect = 2.350e-130
Identity = 369/547 (67.46%), Postives = 404/547 (73.86%), Query Frame = 1 
Query:  181 MQEQYLPADVVKSTFRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADPSL-EPPLSPKADPAQAVTCGLDRLLLDVEGKPATNGASGGDGPGEIVR----------ADSSSAEAKFAQAFPSQSVSAPTKXXXXXXXXXXXXPSSQGAAALTSAETAAPQESAPVRPYEPEARGSLMVSPPSVPAEESRAASPE--VPLMRLSSSKSPPPRARKGGPKKLXXXXXXXXXXXSGGGVVKLSGFDVPEAAATAPAAPSSGPSAQ---ESDLELARKLQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTFDKNKYKNVKGIGSDMLFGAQDDDPQEQARRAMKVQEYSGSAAISSDMFFDREGENAGYDGAAGGVGGIGDMAEQIAISAAAELQGAAQAANKLK 1773
            MQ+QYLP DVVKSTFRRLRSK DNKVCFDC TRNPTWASATYGIFICYDCSAVHR+MGVHVTFVRSIELDKWKP+E+E MKRGGNGNAR+FFRSHG+TDMEK+EQKYHSRAAQMYR HLKK MADP +  PP SP+ DP   V  GLDRL+ D++GKPA +  + G   G               D+++A AKFAQAFPS   +APT               S  A    +A+  AP  +APV+PYEP+ RGSL VSPP+ PA  + A       P++RL SSKSPPPR RKGG KK+XXXXXXXXXXXSGG  VKLSGF+    A                 ++DL LARKL  XXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  +FDK KYKNVKGIGSDMLFGA+DDDP EQARRAMK QEYS SAAISSDM+              GGVG  GDMA+QIA SAAA      QAA KLK
Sbjct:    1 MQDQYLPPDVVKSTFRRLRSKPDNKVCFDCPTRNPTWASATYGIFICYDCSAVHRNMGVHVTFVRSIELDKWKPSEMEVMKRGGNGNARSFFRSHGVTDMEKSEQKYHSRAAQMYRAHLKKAMADPGVVTPPQSPREDPVDNVADGLDRLMEDMDGKPAASAPAKGFTNGGXXXXXXXXXXXPSVDAAAAAAKFAQAFPSSHPAAPTSG-------------SAAAGGHAAADVPAPP-AAPVKPYEPKPRGSLSVSPPTAPAAAAGAVDEPKATPVVRLISSKSPPPRIRKGGAKKMXXXXXXXXXXXSGGAAVKLSGFEDTTTAXXXXXXXXXXXXXXXXXDADLALARKLXXXXXXXXXXXXXXXRLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXS-SFDKGKYKNVKGIGSDMLFGAKDDDPDEQARRAMKNQEYSQSAAISSDMYXXXXXXXXXXXXYDGGVG-FGDMADQIAASAAA------QAAGKLK 525
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BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A835YU03_9STRA (Arf-GAP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU03_9STRA)

HSP 1 Score: 205 bits (521), Expect = 2.010e-59
Identity = 99/157 (63.06%), Postives = 126/157 (80.25%), Query Frame = 1 
Query:  193 YLPADVVKSTFRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMA---DPSLEPPLSPK----ADPAQAVTCGLDRLLLDVE 642
            Y+ AD+VKSTFRRL++  DNKVCFDC TRNPTWAS TYGIF+CYDCSAVHR+MGVH+TFVRS+ELDKW+  E+++MKRGGN  ARA+F+SHG++DM KT+ KY SRAA+ YR HLK+++A   DP+ +   S      AD A A+ CGLDR++ D+E
Sbjct:    7 YVEADLVKSTFRRLQAHRDNKVCFDCPTRNPTWASVTYGIFLCYDCSAVHRNMGVHITFVRSVELDKWRQWELDSMKRGGNAAARAYFQSHGVSDMGKTDAKYRSRAAEAYRAHLKQLIAETPDPAADVWNSAHGARDADEA-AIACGLDRIMRDIE 162
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BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A4D9D0S2_9STRA (Arf-GAP domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0S2_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.900e-47
Identity = 90/166 (54.22%), Postives = 117/166 (70.48%), Query Frame = 1 
Query:  217 STFRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADP------SLEPPLSPKADPAQAVTCGLDRLLL---DVEGKPATNGASGGDGPG 687
            + F+R++S+ +N+VCFDC TRNPTWASATYG+FICY+CSA HR++GVH+TFVRS++LD+W P ++  M+ GGN NA  FFR HG+T   K EQKY SRAA++Y+ HL K++AD       +LEPP  P  D   AV CGLD L+L   + E  P   GA   DG G
Sbjct:   12 AAFKRMKSRPENQVCFDCPTRNPTWASATYGVFICYNCSATHRALGVHITFVRSVDLDEWTPQQLLTMRLGGNSNAAQFFRRHGVTHGGKVEQKYSSRAAELYKAHLSKLVADKILMDANALEPP--PPTDTVAAVGCGLDNLMLSYQEPEDVPV-GGAGSSDGEG 174
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BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A7S2B6H1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B6H1_9STRA)

HSP 1 Score: 177 bits (450), Expect = 9.620e-46
Identity = 87/156 (55.77%), Postives = 112/156 (71.79%), Query Frame = 1 
Query:  181 MQEQYLPADVVKSTFRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDME-KTEQKYHSRAAQMYRTHLKKVMADPSLEPPLSPKADPAQAVTCGLDRLLLDVEG 645
            M  +Y+  +V  S F++LR+K  NKVCFDC +RNPTWASAT+GIFIC DCSA HR MGVH+TFVRS+ELD+W P +++ MK GGN NA  FFRSHG+ DM  K EQKY S AA+ Y+ HLKK+M+   +E       +P +  +  +D LLLDV+G
Sbjct:    1 MNGKYVTQEVKNSAFKKLRTKGANKVCFDCSSRNPTWASATFGIFICLDCSASHRRMGVHITFVRSVELDEWTPDQLKMMKVGGNENAGTFFRSHGVRDMHIKHEQKYVSSAARQYKNHLKKLMSTEDVE---EVPEEPQRKPSVDIDSLLLDVQG 153
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BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A7S2SFF1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SFF1_9STRA)

HSP 1 Score: 170 bits (430), Expect = 3.600e-45
Identity = 83/166 (50.00%), Postives = 111/166 (66.87%), Query Frame = 1 
Query:  196 LPADVVKSTFRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDME-KTEQKYHSRAAQMYRTHLKKVMADPSLEPPLSPKADPAQAVTCGLDRLLLDVEG--KPATNGASGGDGP 684
            +P++   S F+RL++K DN++CFDC TRNPTWASAT+G+F+C DCSA HR MGVHVTFVRS+ELD+W   ++  M+ GGNGNA AFFRSHG+ D+  KTE+KY S AA+ Y+ HLKK++ +   +P  +         T  LD +  D     + A  G S  D P
Sbjct:   16 VPSEAKTSFFKRLKAKRDNRICFDCPTRNPTWASATFGVFLCLDCSAAHRRMGVHVTFVRSVELDEWTEKQLRTMEVGGNGNAAAFFRSHGVRDLHIKTEEKYQSSAARHYKNHLKKLLEEAPPKPIETQDVGAKTGATDPLDDMFADEMDAQEEAPRGQSASDAP 181
[Close]
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A7J0GY13_9ERIC (ARF-GAP domain 9 n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GY13_9ERIC)

HSP 1 Score: 152 bits (383), Expect = 1.410e-39
Identity = 75/150 (50.00%), Postives = 99/150 (66.00%), Query Frame = 1 
Query:  223 FRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADPSLEP---PLSPKADPAQAVTCGLDRLLLDVEGKPATNG 663
            FR+L++K++NK+CFDC  +NPTWAS TYGIF+C DCSAVHRS+GVHV+FVRS  LD W P +++ M  GGN  A+ FF+ HG  D  K E KY SRAA++YR  L K +A  S+E    P SP A  +   + GL    +    K  ++G
Sbjct:   14 FRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHVSFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWNDGGKIEAKYTSRAAELYRQLLTKEVAKSSVEDTGLPSSPVAYQSAQASNGLPDFKISETPKETSSG 163
[Close]
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: V7CJD9_PHAVU (Arf-GAP domain-containing protein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=V7CJD9_PHAVU)

HSP 1 Score: 159 bits (401), Expect = 1.820e-39
Identity = 75/139 (53.96%), Postives = 98/139 (70.50%), Query Frame = 1 
Query:  223 FRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMA----DPSLEPPLSPKADPAQAVTCGLDRL 627
            FR+L++K++NK+CFDC  +NPTWAS TYGIF+C DCSA HRS+GVHV+FVRS  LD W P +++ M  GGN  AR FF+ HG TD  KT+ KY SRAA++Y+  L K +A    +  L+ P SP A P + V  GL +L
Sbjct:   13 FRKLKAKSENKMCFDCNAKNPTWASVTYGIFLCIDCSAAHRSLGVHVSFVRSTNLDMWSPEQLKTMSLGGNNRARNFFKQHGWTDGGKTDAKYTSRAAELYKQILSKEVAKSMTEKELDSPSSPTASPFEQVVEGLPQL 151
[Close]
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A1D6GD40_MAIZE (ADP-ribosylation factor GTPase-activating protein AGD10 n=2 Tax=Zea mays TaxID=4577 RepID=A0A1D6GD40_MAIZE)

HSP 1 Score: 150 bits (379), Expect = 1.940e-39
Identity = 67/107 (62.62%), Postives = 81/107 (75.70%), Query Frame = 1 
Query:  223 FRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKK 543
            FRRL++K +NK+CFDC  +NPTWAS TYGIF+C DCSAVHRS+GVH+TFVRS  LD W P +++ M  GGN  A AFF+ HG TD  K E KY SRAA++YR  L K
Sbjct:   20 FRRLKAKPENKMCFDCNAKNPTWASVTYGIFLCLDCSAVHRSLGVHITFVRSTNLDSWTPDQLKMMAFGGNNRAHAFFKQHGWTDGGKVEAKYTSRAAELYRQMLNK 126
[Close]
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: UPI0005D3D7AE (probable ADP-ribosylation factor GTPase-activating protein AGD8 n=1 Tax=Amborella trichopoda TaxID=13333 RepID=UPI0005D3D7AE)

HSP 1 Score: 158 bits (400), Expect = 2.910e-39
Identity = 75/140 (53.57%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:  223 FRRLRSKADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADPSLEPPLSPK---ADPAQAVTCGLDRLLL 633
            FR+L+S+++NK+CFDC  +NPTWAS TYGIF+C DCSAVHRS+GVH++FVRS  LD W P +++ M  GGN  A+ FF+ HG TD  K E KY SRAA++YR  L K +A    E P SP+   A PA     GL  + L
Sbjct:   13 FRKLKSRSENKMCFDCNAKNPTWASVTYGIFLCIDCSAVHRSLGVHISFVRSTNLDSWTPEQLKMMSFGGNNRAQVFFKQHGWTDGGKIEAKYTSRAAELYRQLLSKEVAKSLTEDPTSPRSPLASPANQTVNGLSHVKL 152
[Close]
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Match: A0A7S3Y2V3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y2V3_HETAK)

HSP 1 Score: 160 bits (404), Expect = 4.350e-39
Identity = 81/147 (55.10%), Postives = 103/147 (70.07%), Query Frame = 1 
Query:  244 ADNKVCFDCRTRNPTWASATYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARAFFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADP-----SLEPPLSPKADPAQAVTCGLDRLLLDVEGKPATNGAS 669
            ++N+ CFDC TRNPTWASATYGIFICYDCS+VHR+MGVH+TFVRS +LD+W+P ++E MK GGNGNA+ +FR HG T  E  E+KY  R AQMY+THL K++        ++EP   P+         GLD LL+ + G P  NG S
Sbjct:    3 SENRTCFDCPTRNPTWASATYGIFICYDCSSVHRNMGVHITFVRSCDLDEWRPDQLERMKLGGNGNAKLYFRQHGNTGKE-GERKYTHRVAQMYKTHLDKLVNQKLSEGNNIEP--EPEFKQNDGSVDGLDALLMGL-GSPRNNGDS 145
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12188.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KF81_9PHAE2.350e-13067.46Arf-GAP domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YU03_9STRA2.010e-5963.06Arf-GAP domain-containing protein n=1 Tax=Tribonem... [more]
A0A4D9D0S2_9STRA1.900e-4754.22Arf-GAP domain-containing protein n=2 Tax=Monodops... [more]
A0A7S2B6H1_9STRA9.620e-4655.77Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2SFF1_9STRA3.600e-4550.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7J0GY13_9ERIC1.410e-3950.00ARF-GAP domain 9 n=1 Tax=Actinidia rufa TaxID=1657... [more]
V7CJD9_PHAVU1.820e-3953.96Arf-GAP domain-containing protein n=1 Tax=Phaseolu... [more]
A0A1D6GD40_MAIZE1.940e-3962.62ADP-ribosylation factor GTPase-activating protein ... [more]
UPI0005D3D7AE2.910e-3953.57probable ADP-ribosylation factor GTPase-activating... [more]
A0A7S3Y2V3_HETAK4.350e-3955.10Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12188contigS-dermatodea_contig12188:1193..6340 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.1
Seed ortholog evalue3.6e-111
Seed eggNOG ortholog2880.D8LT65
Preferred nameARFGAP2
KEGG koko:K11855,ko:K12493,ko:K16682
KEGG Pathwayko04144,ko04390,ko04391,ko04392,map04144,map04390,map04391,map04392
GOsGO:0001654,GO:0001745,GO:0002790,GO:0003674,GO:0005096,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005793,GO:0005794,GO:0005798,GO:0005829,GO:0005886,GO:0006810,GO:0006886,GO:0006888,GO:0006890,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007275,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008565,GO:0009306,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0030117,GO:0030120,GO:0030126,GO:0030135,GO:0030137,GO:0030234,GO:0030659,GO:0030660,GO:0030662,GO:0030663,GO:0030695,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033036,GO:0034613,GO:0035964,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048200,GO:0048205,GO:0048475,GO:0048513,GO:0048592,GO:0048731,GO:0048749,GO:0048856,GO:0050790,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0060589,GO:0061024,GO:0065007,GO:0065009,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097708,GO:0098588,GO:0098772,GO:0098796,GO:0098805
EggNOG free text desc.GTPase activator activity
EggNOG OGsCOG5347@1,KOG0706@2759
EC3.4.19.12
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03019,ko03036,ko04121,ko04131
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArf GTPase activating protein
Ec32 orthologEc-12_005420.1
Exons3
Model size1773
Cds size1773
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12188.1367.1prot_S-dermatodea_contig12188.1367.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12188 1193..6340 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924235.634613-CDS-S-dermatodea_contig12188:1192..24221622924235.634613-CDS-S-dermatodea_contig12188:1192..2422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 1193..2422 -
1694079114.2043602-CDS-S-dermatodea_contig12188:1192..24221694079114.2043602-CDS-S-dermatodea_contig12188:1192..2422Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 1193..2422 -
1622924235.6448112-CDS-S-dermatodea_contig12188:3030..33181622924235.6448112-CDS-S-dermatodea_contig12188:3030..3318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 3031..3318 -
1694079114.2195587-CDS-S-dermatodea_contig12188:3030..33181694079114.2195587-CDS-S-dermatodea_contig12188:3030..3318Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 3031..3318 -
1622924235.6635008-CDS-S-dermatodea_contig12188:6085..63401622924235.6635008-CDS-S-dermatodea_contig12188:6085..6340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 6086..6340 -
1694079114.2377062-CDS-S-dermatodea_contig12188:6085..63401694079114.2377062-CDS-S-dermatodea_contig12188:6085..6340Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12188 6086..6340 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12188.1367.1

>prot_S-dermatodea_contig12188.1367.1 ID=prot_S-dermatodea_contig12188.1367.1|Name=mRNA_S-dermatodea_contig12188.1367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=591bp
PKHFFFATITDSSQHPAQTAAHQSKQRTARANANFEFSGPREARNRTRGR
EVRSRPTCLPMQEQYLPADVVKSTFRRLRSKADNKVCFDCRTRNPTWASA
TYGIFICYDCSAVHRSMGVHVTFVRSIELDKWKPAEVEAMKRGGNGNARA
FFRSHGITDMEKTEQKYHSRAAQMYRTHLKKVMADPSLEPPLSPKADPAQ
AVTCGLDRLLLDVEGKPATNGASGGDGPGEIVRADSSSAEAKFAQAFPSQ
SVSAPTKTHSAPTSVAHAPPSSQGAAALTSAETAAPQESAPVRPYEPEAR
GSLMVSPPSVPAEESRAASPEVPLMRLSSSKSPPPRARKGGPKKLGARKL
GAMKLGSGGGVVKLSGFDVPEAAATAPAAPSSGPSAQESDLELARKLQQE
EDAAAAALPSSRLAAAATAALATQSLSSSSKKNGPSGGSIYRSTNDSSSS
SSGGANGGTYRNGGGGGFGVSGGSVSSYGSAGAGGGGSSYGGGGGTFDKN
KYKNVKGIGSDMLFGAQDDDPQEQARRAMKVQEYSGSAAISSDMFFDREG
ENAGYDGAAGGVGGIGDMAEQIAISAAAELQGAAQAANKLK
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mRNA from alignment at S-dermatodea_contig12188:1193..6340-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12188.1367.1 ID=mRNA_S-dermatodea_contig12188.1367.1|Name=mRNA_S-dermatodea_contig12188.1367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=5148bp|location=Sequence derived from alignment at S-dermatodea_contig12188:1193..6340- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAAAACATTTTTTTTTTGCGACGATCACAGACAGCAGCCAGCACCCAGC
ACAGACTGCAGCACACCAGAGCAAGCAGAGGACAGCGCGAGCGAACGCGA
ATTTCGAATTCTCCGGACCACGGGAGGCCCGCAATCGCACTCGAGGGAGA
GAGGTTCGCTCACGCCCGACCTGCTTGCCCATGCAGGAGCAGTACCTCCC
GGCCGACGTGGTGAAGAGCACGTTCCGGCGATTGCGAAGCAAAGCCGACA
ACAAGGTTAGTGTGTGCATCAGGACTAATTATAATACTGAATAATGTAGT
AGGCACGAATTATCCCGGAGGGATTTGATAGTACTGGAGTATGTATTCTA
CACTGGTACTTGTATATATAAATATATTTACCGTCGTCGAACATCGTCGT
CTGAGCTGATGTGCTCTCTCGGCGCTGGAGTGCACACGCGCCCCACCGCT
GGCACCAGCACGCCAGCCACATTTGAGTCTGATGGGCGGTGTGTGTGTTG
TCGAGCTCTCGCTCGTGCGTGCCCACGGTTGAGGTTCTTTTCGCTTGCTC
TCGCATTTTTTGTTCGGATGTTCTGGCATTGTATCGTTGTCACACGACAC
CGTGGTGCTAATCATAGTATTATAGTGTTGTGTAGTATACACTATGAAAC
CGCGACGAGCAGAGAACGGCGGCGGTCAGTGCGGTGTCTTGTGTTCGGTT
TGTTTCGTTTCTCATCTTCCTGTGTTGTCTGGTCTGTGCGAAGCCGGCTC
GGTACATCTCAAAAAGCTTTGTCCGGCTCATCTCACACATCATCACCATC
ACCACACCCCCAACCAAATACTGCAGGCTACTATAGTATGATAGCATATT
CAGAATATAAAGCAGTACGTGCGCGCGCTGCCCCGATGTGTTTCGCGTTG
GGCCCTCCTCTTCCCTCCGGGAAGCAAGCGCCTCGGAATCGATTGTGTTG
GGGATATACTGCTGTAGCAGGTACAGTAGATGGTATGCATATCATGCCTC
CTGGGCGCGCTTTTTATTTTCCAGGTGTTTTCCAGCAATGTTTTATCATA
CATGTGCTCTGTACAGGCATCTTATGTACAGCAGGACGTCGTGTACAAGT
ACATCTTGGTGAAATATTATGGTATTTCTTGGTTGTCATGCTGCCTGTGG
ATAGGCTCATCACAATCGGTGGAGAGCACCTCGGATCGAAGTGCCGACCT
GGTTTCCGTTCAAACGTCCTGACATTAACATGAGAGATTTACTTGCATCG
TATGAAAGCATGTCGGAAGTCCGCCAGTTGGAGCGCTTCGCGCAACAGCA
GATGACTTAAATTTGTTGTCTAATATACATATCATACCAGGATCCATGAT
GTGATCTATGGTCGAGGTCGGCCATTCTTGCGTTTTCAAACACATGCAGC
AGCAGTATACCCGTAGAGTAGTACTCTGTACAAGCATACACGTAAACTTT
GACTGCTACAGCAGTGGAACTCTAGCTAGAGCTCTAGACATCTACAACAG
TACAGTTAGTAGTGTTTGCATATACCAGTACTCACAGTTGTAGAGCTCTT
TACATTGTATCATAGCTCTACTGCTTAGGCTGGCATTGTCGAAGAAACTA
CGGGAAAAGGTCACGGAATGATAATATCATTGGAGAGCTAAAAAGTATAG
CATACGATAGAGCCCAGAGCTTTAAAACTCTACTTGAACCCTCGTCCTCT
CCTTTGTCTCATTATCTTTGTACCAAATCGAATTGTTCCGCTTTTTTTTC
TTGCGTACAGACAGTAGACACACCTTCATCACACCTCCGGTATTGGAACT
ATTTATAAAGAAACAAAATCTATTATAGTATCCACCACCAATCCACCATC
CACCATCCATTCCATCCAATCTCCATCCATCCCTACATCCCTACATCCCT
ACGCACTGGTACACTGGTTCAGGGGAAACTGAAAGTAGGTACTGACTATA
TACGGCCTCTACTCTCTCAGTAAGGCATTATGTGTCGGGGGGGGACTACA
AATGTACAGGTGGGCTATCTATAGTGTGTATAGTGTACATGGCGCGACAA
GAACAACATCATCTCCAAATCGTGAGTCATCACGAGTCCCCGCGTAAATA
TGTACCGCCGGTCGACATAAATTATCCGGGGGTACAATATGATAATACAC
TGACTGTTACACTGCGCAGTATTCCCTCATTTGGGGTATCATATTATACA
CACAATACAAAATAATGCATGATTATAACACCTATTAATATCATACCAGG
TGCTTCGAAGTATGTCGACAATCAGGTAGGTACACAAGACAGCAGTTGGA
CTCGACCATTGACGAGACCGCGGGTTGTAAAGGCCACTCTCGGATGGCAC
TCATACTTACTTCCCGCAGCAGTATCATCCTGATCTATTGAAACGTTAAC
GCTGCCCACACCAAATGCCACCAAAGGACTGGCGTTATCCTATTCTAAAC
TCTAAACCAGTAGACTACAGCTGTATCATATGGTATCATAAAAGTAGTGG
TATGATACAAGTGTTGAGGACGGTGGACGGCACAGAGAGGCCGTCGTGTG
ATACAAGCAGTATACATACTGTACAAGCAGGCGGTAACTGCCCCGCCTCC
TGACATCAACGCACGGGTGGGATTTCGGGGACGGGGTTCACAATTGATTC
ACTCACCTCGGTAAAATTACTCGTCTATGGTGTGTCCGTCTATCCCAGCG
AAGGTATTAAGCTGTTGTTTCGGCACCCCACTGACTGATTCTACACATGT
GTGTATGTGCATGTGATTCAGCAGAGGGGAACAACAGTCAGTTCGTGCTC
CTGGCCAGTTCGAACGTCGTGTATCACGCGTCCTCGCTTTACAGGTCGTT
CGCGAAAGTTCGAACACTGACTATATAAAACGCATGCCTGATGTTGAAGG
GCTGAATCGCGATCGGTACTGTACCAACAAGCTTGTTTACGACGAAACTC
ACCAAAACCCCCCGCCCCCCCGCCCCCGCCCCCCCAAAAAACAAACGACG
CGCTACTACCGCCGAACAAAAGGTATGCTTTGACTGCCGTACGCGGAACC
CCACGTGGGCGTCCGCGACGTACGGCATCTTCATCTGCTACGACTGCTCG
GCGGTCCACCGCTCGATGGGTGTTCACGTGACCTTCGTGCGCAGCATCGA
GCTCGACAAATGGAAGCCGGCGGAGGTGGAGGCCATGAAGCGCGGGGGCA
ACGGCAACGCCCGGGCGTTCTTCCGGTCCCACGGCATCACCGATATGGAG
AAGACGGAGCAGAAGTACCACTCCCGGGCGGCGCAGATGTACCGCACCCA
CCTCAAAAAGGTGCGAGCTGCGAACCTGGCGATTTTAGGTTGCGTGGTTG
TTGCGATTTCGTTCGCGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG
GTGGTGGTGATGATGTTAGGATTGGTTGCGCATCGGGGTTTCAGTCGTCA
GGAAGGCGGGGCACGTTTAGACGCTTGGAGTTTTGATGTGGGCGTAAAAA
AGAAAACGAGAAAGAAAGCGGGGCGAGAGAAGAGGATGTTTTTTATGGGT
TGATGTGACCAGCAGGCGTCCTCTTCGTTTTTCCATTCGCGTATGCGACG
ATAGTCTGCTGGTTCAGAGCCCGCCGCGCTTGTGCCGCGAACGACGGACG
GAAGGCGTCACCAATGGAAATCGACACCTCCCGTTAGCGAGTTTCCGCGG
AAGGCACGCGGTGGTGTGACAGTAGTCGAGCTGATCGCATTGGAGTGTCT
GATGGCCTCACATGCGAGCCCTCGCGTGTGACAATTGGAGCACATATTTT
TCTGTGTACTTGGAGCGCCGCTGTGTTCTTGTACCCCGCCAAACTCCGCC
CGGTGATGCTCGTCGCTCCCCCTCCCCTCCTCGGCCGCCCCTGTTTTTTT
CTACCTAAAACGACACAGGTAATGGCCGACCCCAGCTTGGAGCCGCCGCT
CTCTCCAAAGGCGGACCCTGCGCAAGCTGTCACTTGCGGCCTCGACCGCC
TCTTGCTGGACGTGGAGGGAAAGCCGGCGACGAACGGTGCGTCCGGCGGG
GACGGGCCGGGGGAGATAGTCCGAGCGGACAGCTCGTCGGCGGAGGCTAA
ATTCGCCCAGGCGTTCCCTTCCCAGTCCGTCTCCGCGCCGACCAAGACCC
ACTCGGCCCCGACCTCCGTAGCGCACGCGCCGCCGAGCAGTCAGGGGGCC
GCCGCGCTGACATCAGCCGAGACGGCCGCTCCCCAGGAGTCGGCGCCGGT
AAGGCCGTACGAACCGGAGGCCCGGGGAAGCCTCATGGTGTCCCCGCCCT
CGGTGCCCGCGGAGGAGTCCCGCGCTGCGTCCCCGGAGGTACCCCTAATG
AGGCTGAGCTCCTCCAAATCACCCCCGCCGCGCGCGCGAAAAGGCGGGCC
GAAGAAGCTGGGGGCGAGAAAGCTTGGCGCGATGAAGCTCGGCAGCGGCG
GCGGGGTGGTGAAGCTGTCGGGCTTCGACGTCCCGGAGGCCGCAGCGACG
GCGCCGGCGGCGCCGAGCTCGGGTCCCTCGGCGCAGGAGTCGGACCTGGA
GCTCGCGCGAAAGCTCCAGCAGGAAGAGGACGCGGCCGCGGCCGCCCTCC
CTTCCTCGCGCCTGGCGGCGGCAGCGACGGCGGCGCTCGCGACCCAGTCC
TTGTCGTCATCGAGCAAGAAGAATGGGCCCAGCGGTGGGTCGATCTACCG
CTCGACGAACGACTCTTCCTCTTCCTCCTCAGGGGGCGCTAACGGCGGAA
CATACCGCAACGGAGGCGGGGGGGGCTTCGGGGTGTCGGGCGGGTCGGTC
TCCTCTTACGGCTCAGCTGGCGCCGGCGGGGGCGGCAGTAGTTACGGGGG
CGGCGGGGGGACCTTCGATAAGAATAAGTATAAGAATGTCAAGGGGATAG
GATCGGACATGCTGTTCGGGGCTCAGGATGACGACCCGCAGGAGCAGGCG
CGTCGGGCGATGAAGGTGCAGGAGTATAGCGGGTCGGCGGCGATAAGCAG
TGACATGTTCTTTGACCGAGAGGGGGAGAACGCCGGCTACGACGGCGCCG
CGGGCGGGGTGGGCGGGATCGGGGACATGGCGGAGCAAATCGCCATCTCG
GCGGCAGCGGAGTTGCAGGGCGCCGCTCAAGCCGCGAACAAGCTCAAG
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Coding sequence (CDS) from alignment at S-dermatodea_contig12188:1193..6340-

>mRNA_S-dermatodea_contig12188.1367.1 ID=mRNA_S-dermatodea_contig12188.1367.1|Name=mRNA_S-dermatodea_contig12188.1367.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3546bp|location=Sequence derived from alignment at S-dermatodea_contig12188:1193..6340- (Saccorhiza dermatodea SderLu1190fm monoicous)
CCAAAACATTTTTTTTTTGCGACGATCACAGACAGCAGCCAGCACCCAGC
ACAGACTGCAGCACACCAGAGCAAGCAGAGGACAGCGCGAGCGAACGCGA
ATTTCGAATTCTCCGGACCACGGGAGGCCCGCAATCGCACTCGAGGGAGA
GAGGTTCGCTCACGCCCGACCTGCTTGCCCATGCAGGAGCAGTACCTCCC
GGCCGACGTGGTGAAGAGCACGTTCCGGCGATTGCGAAGCAAAGCCGACA
ACAAGCCAAAACATTTTTTTTTTGCGACGATCACAGACAGCAGCCAGCAC
CCAGCACAGACTGCAGCACACCAGAGCAAGCAGAGGACAGCGCGAGCGAA
CGCGAATTTCGAATTCTCCGGACCACGGGAGGCCCGCAATCGCACTCGAG
GGAGAGAGGTTCGCTCACGCCCGACCTGCTTGCCCATGCAGGAGCAGTAC
CTCCCGGCCGACGTGGTGAAGAGCACGTTCCGGCGATTGCGAAGCAAAGC
CGACAACAAGGTATGCTTTGACTGCCGTACGCGGAACCCCACGTGGGCGT
CCGCGACGTACGGCATCTTCATCTGCTACGACTGCTCGGCGGTCCACCGC
TCGATGGGTGTTCACGTGACCTTCGTGCGCAGCATCGAGCTCGACAAATG
GAAGCCGGCGGAGGTGGAGGCCATGAAGCGCGGGGGCAACGGCAACGCCC
GGGCGTTCTTCCGGTCCCACGGCATCACCGATATGGAGAAGACGGAGCAG
AAGTACCACTCCCGGGCGGCGCAGATGTACCGCACCCACCTCAAAAAGGT
ATGCTTTGACTGCCGTACGCGGAACCCCACGTGGGCGTCCGCGACGTACG
GCATCTTCATCTGCTACGACTGCTCGGCGGTCCACCGCTCGATGGGTGTT
CACGTGACCTTCGTGCGCAGCATCGAGCTCGACAAATGGAAGCCGGCGGA
GGTGGAGGCCATGAAGCGCGGGGGCAACGGCAACGCCCGGGCGTTCTTCC
GGTCCCACGGCATCACCGATATGGAGAAGACGGAGCAGAAGTACCACTCC
CGGGCGGCGCAGATGTACCGCACCCACCTCAAAAAGGTAATGGCCGACCC
CAGCTTGGAGCCGCCGCTCTCTCCAAAGGCGGACCCTGCGCAAGCTGTCA
CTTGCGGCCTCGACCGCCTCTTGCTGGACGTGGAGGGAAAGCCGGCGACG
AACGGTGCGTCCGGCGGGGACGGGCCGGGGGAGATAGTCCGAGCGGACAG
CTCGTCGGCGGAGGCTAAATTCGCCCAGGCGTTCCCTTCCCAGTCCGTCT
CCGCGCCGACCAAGACCCACTCGGCCCCGACCTCCGTAGCGCACGCGCCG
CCGAGCAGTCAGGGGGCCGCCGCGCTGACATCAGCCGAGACGGCCGCTCC
CCAGGAGTCGGCGCCGGTAAGGCCGTACGAACCGGAGGCCCGGGGAAGCC
TCATGGTGTCCCCGCCCTCGGTGCCCGCGGAGGAGTCCCGCGCTGCGTCC
CCGGAGGTACCCCTAATGAGGCTGAGCTCCTCCAAATCACCCCCGCCGCG
CGCGCGAAAAGGCGGGCCGAAGAAGCTGGGGGCGAGAAAGCTTGGCGCGA
TGAAGCTCGGCAGCGGCGGCGGGGTGGTGAAGCTGTCGGGCTTCGACGTC
CCGGAGGCCGCAGCGACGGCGCCGGCGGCGCCGAGCTCGGGTCCCTCGGC
GCAGGAGTCGGACCTGGAGCTCGCGCGAAAGCTCCAGCAGGAAGAGGACG
CGGCCGCGGCCGCCCTCCCTTCCTCGCGCCTGGCGGCGGCAGCGACGGCG
GCGCTCGCGACCCAGTCCTTGTCGTCATCGAGCAAGAAGAATGGGCCCAG
CGGTGGGTCGATCTACCGCTCGACGAACGACTCTTCCTCTTCCTCCTCAG
GGGGCGCTAACGGCGGAACATACCGCAACGGAGGCGGGGGGGGCTTCGGG
GTGTCGGGCGGGTCGGTCTCCTCTTACGGCTCAGCTGGCGCCGGCGGGGG
CGGCAGTAGTTACGGGGGCGGCGGGGGGACCTTCGATAAGAATAAGTATA
AGAATGTCAAGGGGATAGGATCGGACATGCTGTTCGGGGCTCAGGATGAC
GACCCGCAGGAGCAGGCGCGTCGGGCGATGAAGGTGCAGGAGTATAGCGG
GTCGGCGGCGATAAGCAGTGACATGTTCTTTGACCGAGAGGGGGAGAACG
CCGGCTACGACGGCGCCGCGGGCGGGGTGGGCGGGATCGGGGACATGGCG
GAGCAAATCGCCATCTCGGCGGCAGCGGAGTTGCAGGGCGCCGCTCAAGC
CGCGAACAAGCTCAAGGTAATGGCCGACCCCAGCTTGGAGCCGCCGCTCT
CTCCAAAGGCGGACCCTGCGCAAGCTGTCACTTGCGGCCTCGACCGCCTC
TTGCTGGACGTGGAGGGAAAGCCGGCGACGAACGGTGCGTCCGGCGGGGA
CGGGCCGGGGGAGATAGTCCGAGCGGACAGCTCGTCGGCGGAGGCTAAAT
TCGCCCAGGCGTTCCCTTCCCAGTCCGTCTCCGCGCCGACCAAGACCCAC
TCGGCCCCGACCTCCGTAGCGCACGCGCCGCCGAGCAGTCAGGGGGCCGC
CGCGCTGACATCAGCCGAGACGGCCGCTCCCCAGGAGTCGGCGCCGGTAA
GGCCGTACGAACCGGAGGCCCGGGGAAGCCTCATGGTGTCCCCGCCCTCG
GTGCCCGCGGAGGAGTCCCGCGCTGCGTCCCCGGAGGTACCCCTAATGAG
GCTGAGCTCCTCCAAATCACCCCCGCCGCGCGCGCGAAAAGGCGGGCCGA
AGAAGCTGGGGGCGAGAAAGCTTGGCGCGATGAAGCTCGGCAGCGGCGGC
GGGGTGGTGAAGCTGTCGGGCTTCGACGTCCCGGAGGCCGCAGCGACGGC
GCCGGCGGCGCCGAGCTCGGGTCCCTCGGCGCAGGAGTCGGACCTGGAGC
TCGCGCGAAAGCTCCAGCAGGAAGAGGACGCGGCCGCGGCCGCCCTCCCT
TCCTCGCGCCTGGCGGCGGCAGCGACGGCGGCGCTCGCGACCCAGTCCTT
GTCGTCATCGAGCAAGAAGAATGGGCCCAGCGGTGGGTCGATCTACCGCT
CGACGAACGACTCTTCCTCTTCCTCCTCAGGGGGCGCTAACGGCGGAACA
TACCGCAACGGAGGCGGGGGGGGCTTCGGGGTGTCGGGCGGGTCGGTCTC
CTCTTACGGCTCAGCTGGCGCCGGCGGGGGCGGCAGTAGTTACGGGGGCG
GCGGGGGGACCTTCGATAAGAATAAGTATAAGAATGTCAAGGGGATAGGA
TCGGACATGCTGTTCGGGGCTCAGGATGACGACCCGCAGGAGCAGGCGCG
TCGGGCGATGAAGGTGCAGGAGTATAGCGGGTCGGCGGCGATAAGCAGTG
ACATGTTCTTTGACCGAGAGGGGGAGAACGCCGGCTACGACGGCGCCGCG
GGCGGGGTGGGCGGGATCGGGGACATGGCGGAGCAAATCGCCATCTCGGC
GGCAGCGGAGTTGCAGGGCGCCGCTCAAGCCGCGAACAAGCTCAAG
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