mRNA_S-dermatodea_contig1206.1284.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig1206.1284.1
Unique NamemRNA_S-dermatodea_contig1206.1284.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig1206.1284.1 vs. uniprot
Match: A0A6H5JNI7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNI7_9PHAE)

HSP 1 Score: 369 bits (946), Expect = 3.010e-113
Identity = 223/433 (51.50%), Postives = 280/433 (64.67%), Query Frame = 1 
Query:  100 ASNGQPSRL---LLETPIHPAGLGEDA---AMRVTPTLSLKRRRLLRLEDGNLIVLPTNIYKQAGGVKLDLSLGGFRIDGEKCTLKNRAFNFGVLQGFTRENLLALRAFRNILIPPDRA-VETPINPIAAAEVLFRYDEEHLKPAPGT---DQSSCEGPGAWIPDSRELHVTFVGSSMEIRVKAGELRAVDRPLQCKLALEALKRDPKVLAETLEPAPPLTRGPGWGGSDLIGMEPGTTGFARAP-------SVP-----------------AAVGGESAAYNAFNAHIPESSLDAGMESYGEG--------SASRQRXXXXXXSVV------------ADDGVTYDLPTYVQNVETKQQRSTLRLKMPLNGFLVNGEDVSVADLVVAYGLDVTRQNLLALRACRDAVLTHFAGPDLVKRVVAAEVFHVWAKR 1236
            ASNG P+ +   +       AG+       A    P  + KR+RL+RLE G L+V+PTNIY+QAGGVKLD++LGGFRID EKCTLKNRA+NFGVL GFTRENLLALRAFR+ L+P DR+ + + I+ I AAE + RYDEEH+KP  G+   ++SS  G G WIPDSR +H+T+ GS ME+RVKAG+LRAV+RPLQCK+ALEALK DPKVL   LEPAPP     G GG++ +G EPG TGF+R+P       S P                 A  GG +A ++         + D  ++ +  G        S S  RXXXXXX                +  V YDLP +VQ VE KQ R +LRLK+PL GF+V+GE V  ++LVVA+GLD+TR+NLLALRAC DAVL +FA PDLVKRV+A EVF VW +R
Sbjct:   62 ASNGTPTVVAASVFSAAAAAAGISHTTLPIAATTKPVAAPKRKRLMRLESGELVVIPTNIYRQAGGVKLDITLGGFRIDNEKCTLKNRAYNFGVLPGFTRENLLALRAFRDTLLPTDRSKMPSSIHTIIAAEAMIRYDEEHVKPPEGSSFAEESSHYGAGRWIPDSRVIHMTYTGSDMELRVKAGDLRAVNRPLQCKMALEALKSDPKVLEGKLEPAPPSVDVYGSGGAETVGPEPGATGFSRSPESLQPASSDPRSGGRRVAGGGEGXXSRAPAGGANAEFSLLFGGAAAFANDGFVDDHDNGRPRTKDLDSTSMHRXXXXXXXXXXXXXXTEEGGEGGEGAVEYDLPLHVQIVEGKQCRPSLRLKVPLTGFMVDGEIVPSSELVVAHGLDITRKNLLALRACCDAVLANFAAPDLVKRVIAGEVFRVWTRR 494
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1206.1284.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNI7_9PHAE3.010e-11351.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig1206contigS-dermatodea_contig1206:15632..18395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1783
Cds size1779
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig1206.1284.1prot_S-dermatodea_contig1206.1284.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig1206 15634..18395 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924229.497039-CDS-S-dermatodea_contig1206:15633..162701622924229.497039-CDS-S-dermatodea_contig1206:15633..16270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 15634..16270 -
1694079110.0302339-CDS-S-dermatodea_contig1206:15633..162701694079110.0302339-CDS-S-dermatodea_contig1206:15633..16270Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 15634..16270 -
1622924229.5103383-CDS-S-dermatodea_contig1206:16592..173331622924229.5103383-CDS-S-dermatodea_contig1206:16592..17333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 16593..17333 -
1694079110.040283-CDS-S-dermatodea_contig1206:16592..173331694079110.040283-CDS-S-dermatodea_contig1206:16592..17333Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 16593..17333 -
1622924229.5198028-CDS-S-dermatodea_contig1206:17994..183951622924229.5198028-CDS-S-dermatodea_contig1206:17994..18395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 17995..18395 -
1694079110.0501027-CDS-S-dermatodea_contig1206:17994..183951694079110.0501027-CDS-S-dermatodea_contig1206:17994..18395Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig1206 17995..18395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig1206.1284.1

>prot_S-dermatodea_contig1206.1284.1 ID=prot_S-dermatodea_contig1206.1284.1|Name=mRNA_S-dermatodea_contig1206.1284.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=593bp
SPVGTPLGSALAHDPTTPTNLVRQLGRDLGATPASNGQPSRLLLETPIHP
AGLGEDAAMRVTPTLSLKRRRLLRLEDGNLIVLPTNIYKQAGGVKLDLSL
GGFRIDGEKCTLKNRAFNFGVLQGFTRENLLALRAFRNILIPPDRAVETP
INPIAAAEVLFRYDEEHLKPAPGTDQSSCEGPGAWIPDSRELHVTFVGSS
MEIRVKAGELRAVDRPLQCKLALEALKRDPKVLAETLEPAPPLTRGPGWG
GSDLIGMEPGTTGFARAPSVPAAVGGESAAYNAFNAHIPESSLDAGMESY
GEGSASRQRRRKKKKSVVADDGVTYDLPTYVQNVETKQQRSTLRLKMPLN
GFLVNGEDVSVADLVVAYGLDVTRQNLLALRACRDAVLTHFAGPDLVKRV
VAAEVFHVWAKRTEGCRPDGKLEPLAAAPHLPTTIEGTTVEQNVPISLPQ
VNAPASELTATATPRETRATSAMEVCTSAGTAGGTSLVAPQAGVAAAETM
SLFQLADSDVVKLAGPANSPGGPRVEIQMMVGDLRRSRHSRVGEFKQLLT
AMIGDAIVQAGELDVVTPPIFPSQSLTEHNSSGAAAKVAAARV
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mRNA from alignment at S-dermatodea_contig1206:15632..18395-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig1206.1284.1 ID=mRNA_S-dermatodea_contig1206.1284.1|Name=mRNA_S-dermatodea_contig1206.1284.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2764bp|location=Sequence derived from alignment at S-dermatodea_contig1206:15632..18395- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCCTGTTGGTACCCCTCTCGGATCCGCGCTGGCTCATGATCCCACTAC
CCCGACCAACCTGGTACGCCAACTCGGCCGAGACCTTGGAGCAACCCCGG
CGTCCAACGGACAGCCGTCGCGGCTTCTTCTAGAAACACCGATACACCCG
GCTGGCTTAGGGGAGGATGCGGCGATGAGGGTGACACCGACCTTAAGTCT
GAAGAGGCGAAGGCTGTTGAGACTGGAGGACGGGAATCTGATCGTGCTCC
CGACCAACATCTACAAGCAGGCGGGGGGGGTGAAGCTGGATCTGTCGCTG
GGAGGGTTTCGAATCGACGGAGAGAAGTGCACCCTGAAGAACAGGGCGTT
CAATTTCGGCGTGCTGCAGGGGTTCACGCGGGAGAACCTCCTGGCGCTAA
GGTGCGCGGCGTTGTGTCACTGGTGGACTCGCGGCGCTCAGTACCCGCCC
CTGGCCTCTCGGTTTGCTTTGGTGAATGTATGATACGCGAGCTCTTCAAT
GGTCCCGTCGTCCTTGGATGCCTGTAGATCTACCAGGACTCCTTGCAGGA
ACAACGTTTGCCTCGTGGTGTCTCATGCTTGCCGACTGCTATGAGTTGGT
GGCTGTGCTATGCAAGTTGTCTGGTCATGGCCCAGTGCCTACCAGAGGAC
AAAGCAGACAAAGGTACGCCGTGACGCACAGAGATGCGCGCGAGTCTTGG
CCTGAGAAAGGCCCTCCGGCTGCCCATGACTAGATTGCACCCGACTGGGG
AGACCCTGACAAACGGCGGGCTCCAAAATATTGCGCATTGCATCACGGCC
TCTTTGTGCTGCTGTCGGGGCACCACCCAACCCCGACAAACTGACGAACT
AGCGTCCGCGGCGGACGTCGTTTCCAAGGCCCGGCCAATGACAACAGTAT
TTTTTTGTTTTGATTTCAAGCAATACAAGACCTCGACCTTGGTATCAACC
CATTCGCCACATTTGGCCACAACAAGAAGCCTTAAGACATCGACCCGACC
TACGGTGCGTTTCTCACCTCGTCCCCAACCGTATATGCCAACGCTTCCCC
GTCCGCAATCAGAGCCTTCCGGAACATCCTCATTCCGCCAGACCGCGCGG
TTGAGACGCCCATAAACCCAATAGCCGCCGCGGAAGTCCTTTTTCGGTAC
GACGAGGAGCACCTGAAACCCGCGCCGGGCACTGATCAATCCTCTTGCGA
AGGGCCAGGGGCTTGGATCCCGGACTCTCGGGAGCTGCACGTGACCTTCG
TGGGGAGCAGTATGGAGATTCGGGTAAAGGCGGGCGAACTTCGAGCTGTA
GACAGGCCGCTCCAGTGCAAGCTAGCGCTAGAAGCGCTCAAGCGCGACCC
TAAGGTGCTGGCGGAGACGCTGGAACCCGCGCCCCCTCTTACGAGGGGGC
CCGGCTGGGGCGGCTCGGATCTGATCGGGATGGAGCCCGGTACAACGGGC
TTCGCTCGTGCTCCGTCAGTACCGGCTGCCGTAGGAGGAGAGTCTGCGGC
CTACAACGCTTTCAATGCCCACATCCCGGAGTCGTCACTGGACGCTGGGA
TGGAGAGTTATGGTGAAGGGTCGGCGTCGAGGCAACGAAGAAGGAAGAAA
AAGAAGTCTGTGGTTGCGGATGACGGCGTTACGTACGACCTGCCGACGTA
CGTGCAGAACGTCGAAACCAAGCAGCAGAGATCCACCTTGCGCCTGAAGA
TGCCGCTGAACGGTTTTTTGGTTAACGGAGAGGATGTGTCCGTGGCGGAT
CTGGTGGTCGCCTACGGGTTGGACGTTACGCGACAGAATCTTCTGGCTTT
AAGGTACGACTTTTCCTGTTCCAGGGCTCTCGTTCAGTGAAGCACTGCGA
GCACAATCTATTAACTAGGCGGTAGAGCCTGGCGTATTTTGTGTTGGTCG
TGGAAATTTTATTGCAGTCCATCCTACAAAGTACACTTGTCCAAGTAAAT
AGTCCAAGATGTCCCACCCACCAGCCAACCTCTTCCAGACATAACAATGA
CAGTTTTATTAGCAGCCTCGCTGCCTTCGGGGGAAAACCATGATGTCTTG
TGTGTACCCACAGACAACCCCCCCCCCCCCCTCCCGTGTCCCGTGTCCGC
ATCGCATCGGCGCTACAATTGCCAGGGCCTGCCGCGACGCCGTGTTGACC
CACTTCGCCGGACCGGACCTCGTGAAGCGCGTGGTCGCAGCAGAAGTGTT
CCACGTCTGGGCCAAGAGAACAGAAGGATGCCGCCCGGACGGTAAGCTCG
AGCCGTTGGCAGCGGCACCACACCTGCCAACTACCATCGAGGGCACCACG
GTGGAACAAAACGTGCCAATTTCGTTGCCACAGGTGAACGCCCCGGCATC
GGAGCTGACGGCAACAGCGACGCCGCGGGAGACGAGAGCCACATCAGCAA
TGGAAGTGTGTACCAGCGCCGGCACTGCAGGAGGTACTTCACTTGTCGCC
CCTCAGGCAGGAGTGGCGGCGGCGGAAACGATGTCCCTGTTCCAGCTCGC
TGATAGCGACGTCGTGAAGCTTGCCGGCCCGGCGAACTCCCCAGGAGGGC
CGCGGGTTGAGATCCAGATGATGGTGGGGGACCTGCGGAGATCCCGCCAC
AGCAGGGTTGGGGAGTTCAAGCAGCTGCTCACGGCCATGATCGGCGACGC
CATCGTGCAGGCCGGCGAGCTCGACGTCGTGACCCCGCCAATTTTCCCAT
CGCAATCGCTAACGGAGCACAACTCTAGCGGGGCGGCGGCAAAGGTTGCC
GCGGCCAGGGTACA
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Coding sequence (CDS) from alignment at S-dermatodea_contig1206:15632..18395-

>mRNA_S-dermatodea_contig1206.1284.1 ID=mRNA_S-dermatodea_contig1206.1284.1|Name=mRNA_S-dermatodea_contig1206.1284.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=3558bp|location=Sequence derived from alignment at S-dermatodea_contig1206:15632..18395- (Saccorhiza dermatodea SderLu1190fm monoicous)
AGTCCTGTTGGTACCCCTCTCGGATCCGCGCTGGCTCATGATCCCACTAC
CCCGACCAACCTGGTACGCCAACTCGGCCGAGACCTTGGAGCAACCCCGG
CGTCCAACGGACAGCCGTCGCGGCTTCTTCTAGAAACACCGATACACCCG
GCTGGCTTAGGGGAGGATGCGGCGATGAGGGTGACACCGACCTTAAGTCT
GAAGAGGCGAAGGCTGTTGAGACTGGAGGACGGGAATCTGATCGTGCTCC
CGACCAACATCTACAAGCAGGCGGGGGGGGTGAAGCTGGATCTGTCGCTG
GGAGGGTTTCGAATCGACGGAGAGAAGTGCACCCTGAAGAACAGGGCGTT
CAATTTCGGCGTGCTGCAGGGGTTCACGCGGGAGAACCTCCTGGCGCTAA
GAGTCCTGTTGGTACCCCTCTCGGATCCGCGCTGGCTCATGATCCCACTA
CCCCGACCAACCTGGTACGCCAACTCGGCCGAGACCTTGGAGCAACCCCG
GCGTCCAACGGACAGCCGTCGCGGCTTCTTCTAGAAACACCGATACACCC
GGCTGGCTTAGGGGAGGATGCGGCGATGAGGGTGACACCGACCTTAAGTC
TGAAGAGGCGAAGGCTGTTGAGACTGGAGGACGGGAATCTGATCGTGCTC
CCGACCAACATCTACAAGCAGGCGGGGGGGGTGAAGCTGGATCTGTCGCT
GGGAGGGTTTCGAATCGACGGAGAGAAGTGCACCCTGAAGAACAGGGCGT
TCAATTTCGGCGTGCTGCAGGGGTTCACGCGGGAGAACCTCCTGGCGCTA
AGAGCCTTCCGGAACATCCTCATTCCGCCAGACCGCGCGGTTGAGACGCC
CATAAACCCAATAGCCGCCGCGGAAGTCCTTTTTCGGTACGACGAGGAGC
ACCTGAAACCCGCGCCGGGCACTGATCAATCCTCTTGCGAAGGGCCAGGG
GCTTGGATCCCGGACTCTCGGGAGCTGCACGTGACCTTCGTGGGGAGCAG
TATGGAGATTCGGGTAAAGGCGGGCGAACTTCGAGCTGTAGACAGGCCGC
TCCAGTGCAAGCTAGCGCTAGAAGCGCTCAAGCGCGACCCTAAGGTGCTG
GCGGAGACGCTGGAACCCGCGCCCCCTCTTACGAGGGGGCCCGGCTGGGG
CGGCTCGGATCTGATCGGGATGGAGCCCGGTACAACGGGCTTCGCTCGTG
CTCCGTCAGTACCGGCTGCCGTAGGAGGAGAGTCTGCGGCCTACAACGCT
TTCAATGCCCACATCCCGGAGTCGTCACTGGACGCTGGGATGGAGAGTTA
TGGTGAAGGGTCGGCGTCGAGGCAACGAAGAAGGAAGAAAAAGAAGTCTG
TGGTTGCGGATGACGGCGTTACGTACGACCTGCCGACGTACGTGCAGAAC
GTCGAAACCAAGCAGCAGAGATCCACCTTGCGCCTGAAGATGCCGCTGAA
CGGTTTTTTGGTTAACGGAGAGGATGTGTCCGTGGCGGATCTGGTGGTCG
CCTACGGGTTGGACGTTACGCGACAGAATCTTCTGGCTTTAAGAGCCTTC
CGGAACATCCTCATTCCGCCAGACCGCGCGGTTGAGACGCCCATAAACCC
AATAGCCGCCGCGGAAGTCCTTTTTCGGTACGACGAGGAGCACCTGAAAC
CCGCGCCGGGCACTGATCAATCCTCTTGCGAAGGGCCAGGGGCTTGGATC
CCGGACTCTCGGGAGCTGCACGTGACCTTCGTGGGGAGCAGTATGGAGAT
TCGGGTAAAGGCGGGCGAACTTCGAGCTGTAGACAGGCCGCTCCAGTGCA
AGCTAGCGCTAGAAGCGCTCAAGCGCGACCCTAAGGTGCTGGCGGAGACG
CTGGAACCCGCGCCCCCTCTTACGAGGGGGCCCGGCTGGGGCGGCTCGGA
TCTGATCGGGATGGAGCCCGGTACAACGGGCTTCGCTCGTGCTCCGTCAG
TACCGGCTGCCGTAGGAGGAGAGTCTGCGGCCTACAACGCTTTCAATGCC
CACATCCCGGAGTCGTCACTGGACGCTGGGATGGAGAGTTATGGTGAAGG
GTCGGCGTCGAGGCAACGAAGAAGGAAGAAAAAGAAGTCTGTGGTTGCGG
ATGACGGCGTTACGTACGACCTGCCGACGTACGTGCAGAACGTCGAAACC
AAGCAGCAGAGATCCACCTTGCGCCTGAAGATGCCGCTGAACGGTTTTTT
GGTTAACGGAGAGGATGTGTCCGTGGCGGATCTGGTGGTCGCCTACGGGT
TGGACGTTACGCGACAGAATCTTCTGGCTTTAAGGGCCTGCCGCGACGCC
GTGTTGACCCACTTCGCCGGACCGGACCTCGTGAAGCGCGTGGTCGCAGC
AGAAGTGTTCCACGTCTGGGCCAAGAGAACAGAAGGATGCCGCCCGGACG
GTAAGCTCGAGCCGTTGGCAGCGGCACCACACCTGCCAACTACCATCGAG
GGCACCACGGTGGAACAAAACGTGCCAATTTCGTTGCCACAGGTGAACGC
CCCGGCATCGGAGCTGACGGCAACAGCGACGCCGCGGGAGACGAGAGCCA
CATCAGCAATGGAAGTGTGTACCAGCGCCGGCACTGCAGGAGGTACTTCA
CTTGTCGCCCCTCAGGCAGGAGTGGCGGCGGCGGAAACGATGTCCCTGTT
CCAGCTCGCTGATAGCGACGTCGTGAAGCTTGCCGGCCCGGCGAACTCCC
CAGGAGGGCCGCGGGTTGAGATCCAGATGATGGTGGGGGACCTGCGGAGA
TCCCGCCACAGCAGGGTTGGGGAGTTCAAGCAGCTGCTCACGGCCATGAT
CGGCGACGCCATCGTGCAGGCCGGCGAGCTCGACGTCGTGACCCCGCCAA
TTTTCCCATCGCAATCGCTAACGGAGCACAACTCTAGCGGGGCGGCGGCA
AAGGTTGCCGCGGCCAGGGTAGGCCTGCCGCGACGCCGTGTTGACCCACT
TCGCCGGACCGGACCTCGTGAAGCGCGTGGTCGCAGCAGAAGTGTTCCAC
GTCTGGGCCAAGAGAACAGAAGGATGCCGCCCGGACGGTAAGCTCGAGCC
GTTGGCAGCGGCACCACACCTGCCAACTACCATCGAGGGCACCACGGTGG
AACAAAACGTGCCAATTTCGTTGCCACAGGTGAACGCCCCGGCATCGGAG
CTGACGGCAACAGCGACGCCGCGGGAGACGAGAGCCACATCAGCAATGGA
AGTGTGTACCAGCGCCGGCACTGCAGGAGGTACTTCACTTGTCGCCCCTC
AGGCAGGAGTGGCGGCGGCGGAAACGATGTCCCTGTTCCAGCTCGCTGAT
AGCGACGTCGTGAAGCTTGCCGGCCCGGCGAACTCCCCAGGAGGGCCGCG
GGTTGAGATCCAGATGATGGTGGGGGACCTGCGGAGATCCCGCCACAGCA
GGGTTGGGGAGTTCAAGCAGCTGCTCACGGCCATGATCGGCGACGCCATC
GTGCAGGCCGGCGAGCTCGACGTCGTGACCCCGCCAATTTTCCCATCGCA
ATCGCTAACGGAGCACAACTCTAGCGGGGCGGCGGCAAAGGTTGCCGCGG
CCAGGGTA
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