mRNA_S-dermatodea_contig1206.1281.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
|
Overview
Homology
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A6H5JJG5_9PHAE (DMT protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JJG5_9PHAE) HSP 1 Score: 255 bits (652), Expect = 5.460e-80 Identity = 131/191 (68.59%), Postives = 155/191 (81.15%), Query Frame = 1
Query: 1 RSDRGGLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRM----GECPGRMGAS-GVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGGMLPPGANVIEYITGEIA 558
RS+R GLL+LATVPLVWGTY PSVKY+YQMG+ PPGL+FNF CY+VSV TFAAVA ++ R+ GEC GR G GV E + P++ +L +RYA RAG ELG WLFL GTV WGL+LTSASRA FLVQLTTVIVPVLEAF+GR+KLKPQVWLAC LATVGVALVSLGG+LPPGA++ +YI+G ++
Sbjct: 104 RSERSGLLVLATVPLVWGTYAPSVKYLYQMGESPPGLLFNFACYVVSVLTFAAVASLNTARRHRTATAGEC-GRWGKRRGVEEEAELPPKEKALRNRYAARAGAELGLWLFLAGTV--WGLELTSASRAGFLVQLTTVIVPVLEAFVGRRKLKPQVWLACALATVGVALVSLGGILPPGADLFKYISGSLS 291
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A835Z2R1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2R1_9STRA) HSP 1 Score: 142 bits (358), Expect = 9.460e-36 Identity = 84/189 (44.44%), Postives = 106/189 (56.08%), Query Frame = 1
Query: 4 SDRGGLLLLATVPLVWGTYGPSVKYMYQMGD--GPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIR----------------PQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGGMLP 516
S L +LATVP VWGTY PSVK+M +G PPGL FN CYLVS A A V R R A+ +T+A+ T + +AG ELGGWLF G T+Q++GLQ T ASRAAFLVQ TT+IVP++E+ L R+ + +V +AC ATVG+AL+S G LP
Sbjct: 37 SRAAALAVLATVPCVWGTYTPSVKFMESLGPLVQPPGLFFNAACYLVSGAVLATAQLV---RSRSRSSNNTSPAASAVQTEALNNAGQIAELTEPDLESDSASTPVRSSVLAQAGAELGGWLFAGSTLQIYGLQYTGASRAAFLVQTTTIIVPLIESLLQRRLVPAKVLVACFTATVGIALMSFGDALP 222
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: K0RU20_THAOC (EamA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0RU20_THAOC) HSP 1 Score: 118 bits (295), Expect = 8.570e-28 Identity = 72/169 (42.60%), Postives = 100/169 (59.17%), Query Frame = 1
Query: 4 SDRG-GLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAF-LGRQKLKP-QVWLACGLATVGVALVSL 501
++RG G+L+L TVPL WGTY P+VKYMY+M PG VF+ G YLV+ T ++ + A+ E K R +++ + R G ELG +LF+G +QV GLQ A RAAFLVQLTTV+VP++ A +G P Q WLAC +A VGV+++ +
Sbjct: 117 AERGLGILVLLTVPLAWGTYTPAVKYMYEMEPAIPGFVFSAGYYLVAAVTLRLLSSLQ--------------ANESNELKVDRAEESE--EGLDIRGGWELGSYLFVGNALQVVGLQTVPADRAAFLVQLTTVLVPLVAALSVGALSAVPAQTWLACVVAFVGVSVMGI 269
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A7S1FR69_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FR69_9STRA) HSP 1 Score: 114 bits (284), Expect = 3.400e-26 Identity = 76/194 (39.18%), Postives = 103/194 (53.09%), Query Frame = 1
Query: 4 SDRG-GLLLLATVPLVWGTYGPSVKYMYQMGDGP-PGLVFNFGCYLVSVATFAAVAWV-SGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLG-----RQKLKPQVWLACGLATVGVALVSLGGMLPPGANVIEYITGEIAI 561
+DR GLL+L +VP+VWGTY P+V+Y+Y + D P PGL+F+ Y ++ AT + VA S + P R G S E A +DT D G ELG +L +QV GL RAAFLVQ TTV+VP+L + + + W ACG+AT GV ++S GG G + TG+I I
Sbjct: 130 ADRTRGLLILLSVPVVWGTYAPAVRYLYAVSDPPLPGLIFSAAYYSLASATLSIVAATFSNIDDSSRNVPNREGTS--KEIAAAEEKDTLRRD------GSELGAYLTFANALQVLGLMTVDGDRAAFLVQTTTVMVPILFGLSNLATKKKMNVDGRTWSACGVATAGVYIISSGG----GGGLGGIGTGDILI 311
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A7S0GYT0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GYT0_9EUKA) HSP 1 Score: 108 bits (271), Expect = 6.710e-26 Identity = 60/182 (32.97%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 25 LLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGGMLPPGANVIEYITGEIAIGSV 570
LL+ +PLVWGTY P ++++YQ+ PP + N Y+VSV++ ++ + Q G P + + +AGL+LG WLFLG T+Q+ GL+ T+ ++A LVQLTTVIVPVLE+ + R+ + ++W+ +A GV L++L ++G +++ S+
Sbjct: 83 LLSLIPLVWGTYTPVIRFVYQIDSPPPSSLLNLAFYVVSVSSLI----LTSILQNRGPLP----------------------SKSSLKAGLDLGTWLFLGSTMQLLGLKFTTGTQAGVLVQLTTVIVPVLESIVLRKSVAKRLWIGIIIALCGVLLLTLD-------QAANGVSGSVSLASM 231
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: B7FRX7_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FRX7_PHATC) HSP 1 Score: 111 bits (278), Expect = 7.150e-26 Identity = 64/198 (32.32%), Postives = 103/198 (52.02%), Query Frame = 1
Query: 1 RSDRGGLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQ--KLKPQVWLACGLATVGVALVSLGGM--------LPPGANVIEYITGEIAIG 564
R R GLL+L TVP+ WGT+ P+V+Y+Y + PG VF+ YLV+ ++ ++S ++ G + ++ + + GLELG +LF+G +QV GLQ + RAAFL+QLTT+ VP+L+A L R + + W+AC +A GVA + L L P ++ + +++ G
Sbjct: 7 RERRSGLLVLLTVPVAWGTFEPAVRYLYTIDPPIPGFVFSTCYYLVASSSLYLACFLSQTKKSDGN------------------KSLEVSQPWPIQGGLELGSYLFVGNALQVIGLQTVPSDRAAFLLQLTTIFVPLLDATLARNLYAIPGRTWMACWIALAGVATMGLDRSNTSNSFQNLEPSLGILNDVLSQLSGG 186
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A7S2IBK1_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IBK1_9EUKA) HSP 1 Score: 108 bits (270), Expect = 8.230e-26 Identity = 65/179 (36.31%), Postives = 92/179 (51.40%), Query Frame = 1
Query: 1 RSDRGGLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFN--FGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGGMLPPGANV 531
++ G + L VP+ WGTYG +VK Y++ PP + F C A +A AS E +A P + AGLELG WLFLG +Q+ GLQ T+A+RA FLVQLTTV+VP+ EA L ++L ++W A +AT G+A++S G G+ +
Sbjct: 68 KASPGRVAALVAVPVAWGTYGAAVKVAYELPHPPPTPLLQALFSCVSFGSLLLAGLA--------------SSAASSADENEAATPAERGPDKLAVIAAGLELGLWLFLGQAIQLQGLQRTNAARAGFLVQLTTVLVPLSEAVLLGRQLPARLWAASLVATAGIAIISAEGFGVDGSTL 232
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: F0YKC3_AURAN (EamA domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YKC3_AURAN) HSP 1 Score: 110 bits (276), Expect = 1.150e-25 Identity = 67/176 (38.07%), Postives = 92/176 (52.27%), Query Frame = 1
Query: 4 SDRGGLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGGMLPPGANV 531
SD + +L +VP+VWGTY P+VK +Y + PPG VF+ Y+V++ A+ R PG + AD A RAGLELG +L+ G QV GL+ SA AAFLVQLTTV+VPVLE+ + + + LAC +A GVA++ G+ V
Sbjct: 40 SDAARVAVLCSVPVVWGTYAPAVKAVYALPAPPPGAVFSLFYYVVALGCLGALG-------RAAAAPG-----------------AAAADEGAARAGLELGAYLYAGNLFQVVGLETVSADAAAFLVQLTTVLVPVLESAATGRAVARETQLACAVAFSGVAVLCAEGLAADAGQV 191
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A7R9TUG6_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9TUG6_9VIRI) HSP 1 Score: 109 bits (273), Expect = 2.290e-25 Identity = 72/178 (40.45%), Postives = 93/178 (52.25%), Query Frame = 1
Query: 22 LLLATVPLVWGTYGPSVKYMYQM---GDGPPGL--VFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQVWLACGLATVGVALVSLGG------MLPPG 522
L+L +VPL WGT+ M + PP N G S+A AV VR G GAS P ++L + R G ELG WLF+G ++Q++ L LT+ASR AFLVQ TTVIVP+LEA L R+ + + W AC +AT G+AL+S GG LPPG
Sbjct: 9 LVLTSVPLAWGTWAVVNVLMLNVFVAAGVPPXXXXAINAGIQAASLAALTAVCAARAVRTAGGR-----GAS--------LPAPSALPGAFTLRGGAELGAWLFMGSSLQLYALTLTTASRVAFLVQATTVIVPMLEAALCRRAVSGRTWFACAMATSGIALLSFGGGGAPASALPPG 173
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Match: A0A7S1YBJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBJ7_9STRA) HSP 1 Score: 107 bits (267), Expect = 3.060e-25 Identity = 63/167 (37.72%), Postives = 92/167 (55.09%), Query Frame = 1
Query: 16 GLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATFAAVAWVSGVRQRMGECPGRMGASGVPETKAIRPQDTSLADRYATRAGLELGGWLFLGGTVQVWGLQLTSASRAAFLVQLTTVIVPVLEAFLGRQKLKPQV--WLACGLATVGVALVSLGGM 510
G L+L TVPL WGTY P V+Y+Y++ PG VF+ Y V+ +T + W +Q + G + E A P + +++ GLELG +LFLG +QV GL+ + RA FLVQLTTV+VP+++ L L V W+AC +A GV ++ G+
Sbjct: 27 GFLVLLTVPLAWGTYVPVVRYLYEIKPPVPGFVFSACYYFVAASTLLTITWAQ-QQQAQAQKDGIADPIELDEDVATSP---ATINQFPLIGGLELGTYLFLGNGLQVLGLKTVPSDRAGFLVQLTTVMVPLVQGALAGNLLSIPVRTWVACAIAFSGVLVMGADGI 189 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig1206.1281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig1206.1281.1 >prot_S-dermatodea_contig1206.1281.1 ID=prot_S-dermatodea_contig1206.1281.1|Name=mRNA_S-dermatodea_contig1206.1281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=194bp RSDRGGLLLLATVPLVWGTYGPSVKYMYQMGDGPPGLVFNFGCYLVSVATback to top mRNA from alignment at S-dermatodea_contig1206:260..2530- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig1206.1281.1 ID=mRNA_S-dermatodea_contig1206.1281.1|Name=mRNA_S-dermatodea_contig1206.1281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=2271bp|location=Sequence derived from alignment at S-dermatodea_contig1206:260..2530- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig1206:260..2530- >mRNA_S-dermatodea_contig1206.1281.1 ID=mRNA_S-dermatodea_contig1206.1281.1|Name=mRNA_S-dermatodea_contig1206.1281.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1164bp|location=Sequence derived from alignment at S-dermatodea_contig1206:260..2530- (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |