mRNA_S-dermatodea_contig10170.127.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig10170.127.1
Unique NamemRNA_S-dermatodea_contig10170.127.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig10170.127.1 vs. uniprot
Match: D7FZF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZF1_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 9.620e-22
Identity = 91/223 (40.81%), Postives = 112/223 (50.22%), Query Frame = 1 
Query:  136 SALFDKVATMSRRGQLWIMLRRKSMARAEPLLPGVDTGISTL--SVPLASSVDPSSSTEESSRTAQLEDT---EASTSAAHVEGKAGAPQAVGGGGWNLFGFFPKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXP--------------------------SAKESSSDGSKGEDAGEGRPAVL-------WPRSAWIEGLDPRAQIEAAMAQYLRSTFGY 690
            + L D+ ATMSRR +LW +L+R+S ARAEPLL  VDT I +L  S  L+  V+   +   SS     E++    A    A    +  APQAVGG GWNLFGFFPKDK                 XXXXXXXXXXXX                              ++S+  SK  D  +  P          WP+SAW++GLDPRAQ+EAAM   LRS FGY
Sbjct:  539 AGLVDRAATMSRRARLWTLLKRRSRARAEPLLTSVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPEESIGGGAGNGDATATSEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETVAKLAKASASWSKSGDTEDNEPEAXXXXXXPAWPKSAWLKGLDPRAQVEAAMRDALRSAFGY 761
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BLAST of mRNA_S-dermatodea_contig10170.127.1 vs. uniprot
Match: A0A6H5KSL4_9PHAE (PNPLA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL4_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.040e-13
Identity = 86/250 (34.40%), Postives = 100/250 (40.00%), Query Frame = 1 
Query:  136 SALFDKVATMSRRGQLWIMLRRKSMARAEPLLPGVDTGISTLSVP-LASSVDPSSSTEESSRTAQLEDTEASTSAAHVEGKAG-------------APQAVGGGGWNLFGFFPKDKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPSAKESSSDGSKGEDAGEGRPAVL---------------------------------------------------WPRSAWIEGLDPRAQIEAAMAQYLRSTFGY 690
            + L D+ ATMSRR +LW +L+R+S ARAEPLL  VDT I +L+   L S       T  SS + +         A  V    G             APQAVGG GWNLFGFFPKDK                 XXXXXXXXXXXX                                                                           WP+SAW++GLDPRAQ+EAAM   LRS FGY
Sbjct:  557 AGLVDRAATMSRRARLWTLLKRRSRARAEPLLASVDTSIMSLTPSELLSPPVEEQETALSSSSGRGPQEPVGGGAGGVAASVGVGKGDATTTSEVSAPQAVGGAGWNLFGFFPKDKFSDYLPAGPSPVVEGEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAWPKSAWLKGLDPRAQVEAAMRDALRSAFGY 806
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig10170.127.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZF1_ECTSI9.620e-2240.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KSL4_9PHAE3.040e-1334.40PNPLA domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig10170contigS-dermatodea_contig10170:2535..3883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_001580.1
Exons2
Model size724
Cds size723
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924143.332712-CDS-S-dermatodea_contig10170:2535..26131622924143.332712-CDS-S-dermatodea_contig10170:2535..2613Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10170 2536..2613 -
1694079047.2886684-CDS-S-dermatodea_contig10170:2535..26131694079047.2886684-CDS-S-dermatodea_contig10170:2535..2613Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10170 2536..2613 -
1622924143.3428528-CDS-S-dermatodea_contig10170:3238..38831622924143.3428528-CDS-S-dermatodea_contig10170:3238..3883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10170 3239..3883 -
1694079047.298967-CDS-S-dermatodea_contig10170:3238..38831694079047.298967-CDS-S-dermatodea_contig10170:3238..3883Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig10170 3239..3883 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig10170.127.1prot_S-dermatodea_contig10170.127.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig10170 2536..3883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig10170.127.1

>prot_S-dermatodea_contig10170.127.1 ID=prot_S-dermatodea_contig10170.127.1|Name=mRNA_S-dermatodea_contig10170.127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=241bp
APVRPAVAKGAADAVKEQRRTIAEVGPAGRVSTRPRPGRVSLRFASALFD
KVATMSRRGQLWIMLRRKSMARAEPLLPGVDTGISTLSVPLASSVDPSSS
TEESSRTAQLEDTEASTSAAHVEGKAGAPQAVGGGGWNLFGFFPKDKEQE
QTRVAVSGSSASGRDTDPASAAVATAPSAKESSSDGSKGEDAGEGRPAVL
WPRSAWIEGLDPRAQIEAAMAQYLRSTFGYDGYGMAEGTVG
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mRNA from alignment at S-dermatodea_contig10170:2535..3883-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig10170.127.1 ID=mRNA_S-dermatodea_contig10170.127.1|Name=mRNA_S-dermatodea_contig10170.127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=1349bp|location=Sequence derived from alignment at S-dermatodea_contig10170:2535..3883- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCCCGTGCGCCCTGCTGTGGCTAAGGGCGCCGCTGATGCCGTAAAGGA
GCAACGCCGTACAATTGCGGAGGTGGGGCCAGCAGGGAGAGTTTCCACTA
GGCCGCGTCCGGGGAGGGTTTCACTACGTTTTGCTAGCGCGCTGTTCGAC
AAAGTCGCAACGATGTCGAGAAGAGGCCAGCTGTGGATCATGCTGAGGCG
CAAGTCGATGGCGCGGGCCGAGCCGTTGCTTCCGGGTGTGGACACCGGCA
TCAGCACGCTCTCCGTGCCCCTGGCATCGTCGGTGGATCCGTCCTCGTCG
ACGGAAGAGTCGTCGAGAACCGCCCAACTAGAGGACACTGAAGCGTCGAC
ATCGGCGGCGCACGTGGAGGGAAAAGCGGGCGCTCCCCAAGCGGTGGGCG
GCGGGGGCTGGAATCTGTTCGGCTTCTTTCCCAAGGACAAGGAACAAGAG
CAAACACGCGTCGCGGTTTCTGGATCGTCGGCGTCTGGCAGGGACACAGA
CCCGGCATCCGCAGCGGTCGCCACCGCGCCTTCGGCGAAAGAGTCATCGT
CAGACGGCTCGAAGGGCGAGGATGCAGGCGAAGGTCGGCCGGCCGTCTTG
TGGCCGAGATCAGCTTGGATCGAGGGTTTGGACCCGAGAGCGCAGGTAAG
TTGGTCTCCACATACGTTTAGAGCTCGCACACAGCAGTGCCTTATATTAA
CGTATTTCGCAGCATGTATTGGGACGGAAGATTTACGTGTTTCGTTGGGT
AAGGGAGCGAGTTATCGCCCGATCTGCAGGGAGCACAGCTACTTTTTGTT
GACCCTAGCAGCGAGTGCTCACGAGTTTCCCCCCTAAAAAATTTAACGCT
TTTGAAAACATAGGGCGAGCGTTGGGGTCCCACCTTTTTAACAAGGAGAT
ATGGAACAAGCTACGCCTATGGAGGCTTACGGTATGCATGATGCCCCCCC
TTCATGGTACGGTCGTGTCCCTCGGGTGTCAACCCCACGCGACAATCGTG
TTTAGACGAACGGTGTGTTGTTATGTTTTTGACTATCCTCTCCAGACCGA
CGTACAATGGTGGTGAAAGAAAGCTCCTAAGTCAGCTCCTAAGAGACAGG
GACCCGAAGAACCCAAGACAGGCTTGCCCGATATCTAAATCCTGGCTACG
CGCGTCAAATAGTTACCAAATGGCGTGGCACTGCCCTCACCCAAAGCCTT
CCGTTACCCCGACCTGCCGTACTCACCTCCCACCCGCAAAACACCTCCTT
CTCTACGCTCTGCCGTCAAGATCGAAGCCGCGATGGCGCAATACCTTCGC
TCCACTTTCGGCTACGACGGTTACGGAATGGCGGAGGGGACGGTGGGTG
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Coding sequence (CDS) from alignment at S-dermatodea_contig10170:2535..3883-

>mRNA_S-dermatodea_contig10170.127.1 ID=mRNA_S-dermatodea_contig10170.127.1|Name=mRNA_S-dermatodea_contig10170.127.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at S-dermatodea_contig10170:2535..3883- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCGCCCGTGCGCCCTGCTGTGGCTAAGGGCGCCGCTGATGCCGTAAAGGA
GCAACGCCGTACAATTGCGGAGGTGGGGCCAGCAGGGAGAGTTTCCACTA
GGCCGCGTCCGGGGAGGGTTTCACTACGTTTTGCTAGCGCGCTGTTCGAC
AAAGTCGCAACGATGTCGAGAAGAGGCCAGCTGTGGATCATGCTGAGGCG
CAAGTCGATGGCGCGGGCCGAGCCGTTGCTTCCGGGTGTGGACACCGGCA
TCAGCACGCTCTCCGTGCCCCTGGCATCGTCGGTGGATCCGTCCTCGTCG
ACGGAAGAGTCGTCGAGAACCGCCCAACTAGAGGACACTGAAGCGTCGAC
ATCGGCGGCGCACGTGGAGGGAAAAGCGGGCGCTCCCCAAGCGGTGGGCG
GCGGGGGCTGGAATCTGTTCGGCTTCTTTCCCAAGGACAAGGAACAAGAG
CAAACACGCGTCGCGGTTTCTGGATCGTCGGCGTCTGGCAGGGACACAGA
CCCGGCATCCGCAGCGGTCGCCACCGCGCCTTCGGCGAAAGAGTCATCGT
CAGACGGCTCGAAGGGCGAGGATGCAGGCGAAGGTCGGCCGGCCGTCTTG
TGGCCGAGATCAGCTTGGATCGAGGGTTTGGACCCGAGAGCGCAGGCGCC
CGTGCGCCCTGCTGTGGCTAAGGGCGCCGCTGATGCCGTAAAGGAGCAAC
GCCGTACAATTGCGGAGGTGGGGCCAGCAGGGAGAGTTTCCACTAGGCCG
CGTCCGGGGAGGGTTTCACTACGTTTTGCTAGCGCGCTGTTCGACAAAGT
CGCAACGATGTCGAGAAGAGGCCAGCTGTGGATCATGCTGAGGCGCAAGT
CGATGGCGCGGGCCGAGCCGTTGCTTCCGGGTGTGGACACCGGCATCAGC
ACGCTCTCCGTGCCCCTGGCATCGTCGGTGGATCCGTCCTCGTCGACGGA
AGAGTCGTCGAGAACCGCCCAACTAGAGGACACTGAAGCGTCGACATCGG
CGGCGCACGTGGAGGGAAAAGCGGGCGCTCCCCAAGCGGTGGGCGGCGGG
GGCTGGAATCTGTTCGGCTTCTTTCCCAAGGACAAGGAACAAGAGCAAAC
ACGCGTCGCGGTTTCTGGATCGTCGGCGTCTGGCAGGGACACAGACCCGG
CATCCGCAGCGGTCGCCACCGCGCCTTCGGCGAAAGAGTCATCGTCAGAC
GGCTCGAAGGGCGAGGATGCAGGCGAAGGTCGGCCGGCCGTCTTGTGGCC
GAGATCAGCTTGGATCGAGGGTTTGGACCCGAGAGCGCAGATCGAAGCCG
CGATGGCGCAATACCTTCGCTCCACTTTCGGCTACGACGGTTACGGAATG
GCGGAGGGGACGGTGGGTATCGAAGCCGCGATGGCGCAATACCTTCGCTC
CACTTTCGGCTACGACGGTTACGGAATGGCGGAGGGGACGGTGGGT
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