mRNA_S-dermatodea_contig12018.1254.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig12018.1254.1
Unique NamemRNA_S-dermatodea_contig12018.1254.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6G5ABR6_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ABR6_RHIMP)

HSP 1 Score: 70.5 bits (171), Expect = 1.730e-12
Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DD++ FSAT E   +  RS    + + +L L PQK H G + +K LGH+VS++G+ PDPDK+  +  +P P
Sbjct:  178 VYLDDVVVFSATFEQHLQRLRSVLEAIRSADLTLKPQKCHFGYEELKFLGHVVSAEGVRPDPDKLAAVAELPAP 251          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8B6EI80_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EI80_MYTGA)

HSP 1 Score: 66.2 bits (160), Expect = 6.270e-12
Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DDI+ FS T E+  +   + +  L    LKL P+K     + +K LGHIVSSDG+ PDPDK+  I   P+P
Sbjct:   15 IYLDDIIVFSKTFEDHVQHLTAVFERLKNAGLKLHPKKCTFAKRQIKYLGHIVSSDGILPDPDKISAIKDYPIP 88          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6G5A934_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A934_RHIMP)

HSP 1 Score: 68.9 bits (167), Expect = 6.340e-12
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DD++ FS + E   +  R     + T  L L PQK H G + +K LGH++S+DG+ PDPDK   + A P+P
Sbjct:  288 VYLDDVVIFSESFEEHLKRLRKVLEAIRTAELTLKPQKCHFGYEELKFLGHVISADGVRPDPDKTAAVAAFPVP 361          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A0J7KAB8_LASNI (RNA-directed DNA polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAB8_LASNI)

HSP 1 Score: 67.8 bits (164), Expect = 1.670e-11
Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DD++ FS T E M E  R  +  L + NLKL+P+K  +  + VK LGH+VS  G+T DP+K+  +   P+P
Sbjct:  116 VYLDDVIVFSKTFEEMMENLREVFLRLRSANLKLNPKKCSLFGREVKYLGHVVSEQGITTDPEKISAVKNWPVP 189          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: UPI0018C350EF (uncharacterized protein LOC119629252 n=2 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C350EF)

HSP 1 Score: 66.6 bits (161), Expect = 4.290e-11
Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DDI+C+S+  +   +     +  L  FNLKL P K     + V  LGHI+S+DG+ P+PDK+K +   P P
Sbjct:  397 VYLDDIVCYSSDLKTQIQNLAEIFQRLRNFNLKLQPDKCEFLRREVAYLGHIISTDGVKPNPDKIKAVVEFPTP 470          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A2G8JMA6_STIJA (Retrovirus polyprotein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JMA6_STIJA)

HSP 1 Score: 66.2 bits (160), Expect = 4.730e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DDIL F +T E  +         L   NLKL P K  +  K V+ LGH+VSS+G++PDP+K++ +   P+P
Sbjct:  253 IYLDDILVFGSTVEETTARLEMVIERLERHNLKLKPSKCQLFRKKVRYLGHVVSSEGISPDPEKIRAVKDWPLP 326          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8H8XHZ0_9GAMM (Uncharacterized protein n=4 Tax=Bathymodiolus brooksi thiotrophic gill symbiont TaxID=1052209 RepID=A0A8H8XHZ0_9GAMM)

HSP 1 Score: 66.2 bits (160), Expect = 5.870e-11
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DDI+ FS T EN     R  +  L   +LKLSP+K H     VK LGHIVS +G++ DP K+K +   P+P
Sbjct:  438 VYLDDIIIFSRTFENHLANLREVFERLKEAHLKLSPKKCHFFKTKVKFLGHIVSDEGVSTDPSKIKAVKDWPIP 511          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8B6D3B7_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D3B7_MYTGA)

HSP 1 Score: 62.8 bits (151), Expect = 6.630e-11
Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = -2
Query:   20 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGI 223
            +Y+DDI+ FS T E+  +   + +  L    LKL P+K     + +K LGHIVSSDG+ PDPDK+  I
Sbjct:   28 IYLDDIIVFSKTFEDHVQHLTAVFERLKNAGLKLHPKKCTFAKRQIKYLGHIVSSDGILPDPDKISAI 95          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A0J7K273_LASNI (Krab-a domain-containing protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K273_LASNI)

HSP 1 Score: 65.9 bits (159), Expect = 7.540e-11
Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = -2
Query:    2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
            +Y+DDI+ FS T E M E  R  +  L + NLK++P+K  +  + VK  GH+VS  G+T DP+K+  +   P+P
Sbjct:  315 IYLDDIIVFSKTLEEMIENLRKAFLRLRSANLKINPKKCSLFGREVKYFGHVVSEQGITTDPEKISAVRNWPVP 388          
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI)

HSP 1 Score: 65.9 bits (159), Expect = 7.960e-11
Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = -2
Query:    2 YIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 220
            Y+DDI+ FS+  E   E      S L+  NL+L+ +K    AK++KILGH++S  G+ PDPDK+K ++  P P
Sbjct:  188 YLDDIVIFSSNFEEHLERLSQVLSCLSAANLQLNTKKCTFAAKTIKILGHVISKHGIRPDPDKIKAVSDFPRP 260          
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G5ABR6_RHIMP1.730e-1241.89Putative tick transposon (Fragment) n=1 Tax=Rhipic... [more]
A0A8B6EI80_MYTGA6.270e-1243.24Reverse transcriptase domain-containing protein n=... [more]
A0A6G5A934_RHIMP6.340e-1240.54Putative tick transposon (Fragment) n=1 Tax=Rhipic... [more]
A0A0J7KAB8_LASNI1.670e-1141.89RNA-directed DNA polymerase n=1 Tax=Lasius niger T... [more]
UPI0018C350EF4.290e-1139.19uncharacterized protein LOC119629252 n=2 Tax=Bomby... [more]
A0A2G8JMA6_STIJA4.730e-1140.54Retrovirus polyprotein n=1 Tax=Stichopus japonicus... [more]
A0A8H8XHZ0_9GAMM5.870e-1144.59Uncharacterized protein n=4 Tax=Bathymodiolus broo... [more]
A0A8B6D3B7_MYTGA6.630e-1144.12Reverse transcriptase domain-containing protein n=... [more]
A0A0J7K273_LASNI7.540e-1140.54Krab-a domain-containing protein (Fragment) n=1 Ta... [more]
A0A6B0VG58_IXORI7.960e-1142.47RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig12018contigS-dermatodea_contig12018:921..1600 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size229
Cds size216
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig12018.1254.1prot_S-dermatodea_contig12018.1254.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig12018 932..1600 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.3631735-UTR-S-dermatodea_contig12018:920..9311622924227.3631735-UTR-S-dermatodea_contig12018:920..931Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12018 921..931 +
1694079108.492754-UTR-S-dermatodea_contig12018:920..9311694079108.492754-UTR-S-dermatodea_contig12018:920..931Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig12018 921..931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924227.3820746-CDS-S-dermatodea_contig12018:931..10671622924227.3820746-CDS-S-dermatodea_contig12018:931..1067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 932..1067 +
1694079108.5085325-CDS-S-dermatodea_contig12018:931..10671694079108.5085325-CDS-S-dermatodea_contig12018:931..1067Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 932..1067 +
1622924227.3946772-CDS-S-dermatodea_contig12018:1509..15451622924227.3946772-CDS-S-dermatodea_contig12018:1509..1545Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 1510..1545 +
1694079108.521259-CDS-S-dermatodea_contig12018:1509..15451694079108.521259-CDS-S-dermatodea_contig12018:1509..1545Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 1510..1545 +
1622924227.4036028-CDS-S-dermatodea_contig12018:1556..16001622924227.4036028-CDS-S-dermatodea_contig12018:1556..1600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 1557..1600 +
1694079108.5310564-CDS-S-dermatodea_contig12018:1556..16001694079108.5310564-CDS-S-dermatodea_contig12018:1556..1600Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig12018 1557..1600 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig12018.1254.1

>prot_S-dermatodea_contig12018.1254.1 ID=prot_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp
MAVIPLTLSGSGVNPSLETMCPKIFTDFAPTCAFCGDSFKLKVVKPLQKL
LQISDMFSVVAEKHKMSSMYNC
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mRNA from alignment at S-dermatodea_contig12018:921..1600+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig12018.1254.1 ID=mRNA_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at S-dermatodea_contig12018:921..1600+ (Saccorhiza dermatodea SderLu1190fm monoicous)
TCGGCATTGGCATGGCCGTGATACCTTTAACTTTGTCCGGATCAGGTGTC AATCCGTCGCTGGAGACGATGTGTCCCAAAATTTTCACCGACTTTGCTCC TACATGCGCCTTCTGTGGTGATAGTTTCAAGTTAAAAGTGGTCAAGCGTG ATGGTATGTAACCTTGTGATAGGCTGTATACCTTGACGATGTGGCACTCA CTGTGTAATAACAGTGTGCAGAGGCTCACAGAGTGACTGTAAAGTACACT TGTTTGTAGACCAGAGAATGGTGTGAAAGTGGCGCTTAGTTGGCCGAAGA GAAAGGAGTGATCGAGTGGGGGCGAGCACCACAGGGGGCGAGCCTCCAAC CTATCACGGAAAGATGCACACACACGGGCAATTTGCTACGTACCGGTCAC GGTAACAGGCGGTCAGTCCGACCTCTAGAATCAATACAGGAATATCCTAC TGGACAATGGTCCGATAGACCGTACTCCTATGGTTCAATGTATAACCCGT AGGTGTGTACAATGTACCTAAAGACTACCTACGTGCAGTGTTTACAGCAG TACCAATACTAATGACTGACATTGAGTATTCCAACAAAGCGCTCCAAAAA CTTCTCCAGATCTCGGACATGTTCTGCAGCTGCTAGCAGTAGTAGCGGAA AAACACAAGATGTCGTCAATGTATAATTGC
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Coding sequence (CDS) from alignment at S-dermatodea_contig12018:921..1600+

>mRNA_S-dermatodea_contig12018.1254.1 ID=mRNA_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig12018:921..1600+ (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCCGTGATACCTTTAACTTTGTCCGGATCAGGTGTCAATCCGTCGCT
GGAGACGATGTGTCCCAAAATTTTCACCGACTTTGCTCCTACATGCGCCT
TCTGTGGTGATAGTTTCAAGTTAAAAGTGGTCAAGCATGGCCGTGATACC
TTTAACTTTGTCCGGATCAGGTGTCAATCCGTCGCTGGAGACGATGTGTC
CCAAAATTTTCACCGACTTTGCTCCTACATGCGCCTTCTGTGGTGATAGT
TTCAAGTTAAAAGTGGTCAAGCCGCTCCAAAAACTTCTCCAGATCTCGGA
CATGTTCTCGCTCCAAAAACTTCTCCAGATCTCGGACATGTTCTCAGTAG
TAGCGGAAAAACACAAGATGTCGTCAATGTATAATTGCCAGTAGTAGCGG
AAAAACACAAGATGTCGTCAATGTATAATTGC
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