mRNA_S-dermatodea_contig12018.1254.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous
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Overview
Homology
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6G5ABR6_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5ABR6_RHIMP) HSP 1 Score: 70.5 bits (171), Expect = 1.730e-12 Identity = 31/74 (41.89%), Postives = 48/74 (64.86%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DD++ FSAT E + RS + + +L L PQK H G + +K LGH+VS++G+ PDPDK+ + +P P
Sbjct: 178 VYLDDVVVFSATFEQHLQRLRSVLEAIRSADLTLKPQKCHFGYEELKFLGHVVSAEGVRPDPDKLAAVAELPAP 251
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8B6EI80_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EI80_MYTGA) HSP 1 Score: 66.2 bits (160), Expect = 6.270e-12 Identity = 32/74 (43.24%), Postives = 45/74 (60.81%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DDI+ FS T E+ + + + L LKL P+K + +K LGHIVSSDG+ PDPDK+ I P+P
Sbjct: 15 IYLDDIIVFSKTFEDHVQHLTAVFERLKNAGLKLHPKKCTFAKRQIKYLGHIVSSDGILPDPDKISAIKDYPIP 88
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6G5A934_RHIMP (Putative tick transposon (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6G5A934_RHIMP) HSP 1 Score: 68.9 bits (167), Expect = 6.340e-12 Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DD++ FS + E + R + T L L PQK H G + +K LGH++S+DG+ PDPDK + A P+P
Sbjct: 288 VYLDDVVIFSESFEEHLKRLRKVLEAIRTAELTLKPQKCHFGYEELKFLGHVISADGVRPDPDKTAAVAAFPVP 361
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A0J7KAB8_LASNI (RNA-directed DNA polymerase n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KAB8_LASNI) HSP 1 Score: 67.8 bits (164), Expect = 1.670e-11 Identity = 31/74 (41.89%), Postives = 47/74 (63.51%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DD++ FS T E M E R + L + NLKL+P+K + + VK LGH+VS G+T DP+K+ + P+P
Sbjct: 116 VYLDDVIVFSKTFEEMMENLREVFLRLRSANLKLNPKKCSLFGREVKYLGHVVSEQGITTDPEKISAVKNWPVP 189
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: UPI0018C350EF (uncharacterized protein LOC119629252 n=2 Tax=Bombyx mori TaxID=7091 RepID=UPI0018C350EF) HSP 1 Score: 66.6 bits (161), Expect = 4.290e-11 Identity = 29/74 (39.19%), Postives = 44/74 (59.46%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DDI+C+S+ + + + L FNLKL P K + V LGHI+S+DG+ P+PDK+K + P P
Sbjct: 397 VYLDDIVCYSSDLKTQIQNLAEIFQRLRNFNLKLQPDKCEFLRREVAYLGHIISTDGVKPNPDKIKAVVEFPTP 470
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A2G8JMA6_STIJA (Retrovirus polyprotein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JMA6_STIJA) HSP 1 Score: 66.2 bits (160), Expect = 4.730e-11 Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DDIL F +T E + L NLKL P K + K V+ LGH+VSS+G++PDP+K++ + P+P
Sbjct: 253 IYLDDILVFGSTVEETTARLEMVIERLERHNLKLKPSKCQLFRKKVRYLGHVVSSEGISPDPEKIRAVKDWPLP 326
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8H8XHZ0_9GAMM (Uncharacterized protein n=4 Tax=Bathymodiolus brooksi thiotrophic gill symbiont TaxID=1052209 RepID=A0A8H8XHZ0_9GAMM) HSP 1 Score: 66.2 bits (160), Expect = 5.870e-11 Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DDI+ FS T EN R + L +LKLSP+K H VK LGHIVS +G++ DP K+K + P+P
Sbjct: 438 VYLDDIIIFSRTFENHLANLREVFERLKEAHLKLSPKKCHFFKTKVKFLGHIVSDEGVSTDPSKIKAVKDWPIP 511
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A8B6D3B7_MYTGA (Reverse transcriptase domain-containing protein n=1 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6D3B7_MYTGA) HSP 1 Score: 62.8 bits (151), Expect = 6.630e-11 Identity = 30/68 (44.12%), Postives = 42/68 (61.76%), Query Frame = -2
Query: 20 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGI 223
+Y+DDI+ FS T E+ + + + L LKL P+K + +K LGHIVSSDG+ PDPDK+ I
Sbjct: 28 IYLDDIIVFSKTFEDHVQHLTAVFERLKNAGLKLHPKKCTFAKRQIKYLGHIVSSDGILPDPDKISAI 95
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A0J7K273_LASNI (Krab-a domain-containing protein (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K273_LASNI) HSP 1 Score: 65.9 bits (159), Expect = 7.540e-11 Identity = 30/74 (40.54%), Postives = 46/74 (62.16%), Query Frame = -2
Query: 2 LYIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 223
+Y+DDI+ FS T E M E R + L + NLK++P+K + + VK GH+VS G+T DP+K+ + P+P
Sbjct: 315 IYLDDIIVFSKTLEEMIENLRKAFLRLRSANLKINPKKCSLFGREVKYFGHVVSEQGITTDPEKISAVRNWPVP 388
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Match: A0A6B0VG58_IXORI (RNA-directed DNA polymerase (Fragment) n=1 Tax=Ixodes ricinus TaxID=34613 RepID=A0A6B0VG58_IXORI) HSP 1 Score: 65.9 bits (159), Expect = 7.960e-11 Identity = 31/73 (42.47%), Postives = 46/73 (63.01%), Query Frame = -2
Query: 2 YIDDILCFSATTENMSEIWRSFWSGLTTFNLKLSPQKAHVGAKSVKILGHIVSSDGLTPDPDKVKGITAMPMP 220
Y+DDI+ FS+ E E S L+ NL+L+ +K AK++KILGH++S G+ PDPDK+K ++ P P
Sbjct: 188 YLDDIVIFSSNFEEHLERLSQVLSCLSAANLQLNTKKCTFAAKTIKILGHVISKHGIRPDPDKIKAVSDFPRP 260 The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig12018.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-dermatodea_contig12018.1254.1 >prot_S-dermatodea_contig12018.1254.1 ID=prot_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=72bp MAVIPLTLSGSGVNPSLETMCPKIFTDFAPTCAFCGDSFKLKVVKPLQKLback to top mRNA from alignment at S-dermatodea_contig12018:921..1600+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-dermatodea_contig12018.1254.1 ID=mRNA_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at S-dermatodea_contig12018:921..1600+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top Coding sequence (CDS) from alignment at S-dermatodea_contig12018:921..1600+ >mRNA_S-dermatodea_contig12018.1254.1 ID=mRNA_S-dermatodea_contig12018.1254.1|Name=mRNA_S-dermatodea_contig12018.1254.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at S-dermatodea_contig12018:921..1600+ (Saccorhiza dermatodea SderLu1190fm monoicous)back to top |