mRNA_S-dermatodea_contig11940.1215.1 (mRNA) Saccorhiza dermatodea SderLu1190fm monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-dermatodea_contig11940.1215.1
Unique NamemRNA_S-dermatodea_contig11940.1215.1
TypemRNA
OrganismSaccorhiza dermatodea SderLu1190fm monoicous (Saccorhiza dermatodea SderLu1190fm monoicous)
Homology
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: D8LFT9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFT9_ECTSI)

HSP 1 Score: 97.4 bits (241), Expect = 2.200e-23
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGGMAGTAVDVALYPLDTIKTRLQSP GF+K+GGLRGVYNGLSAAAVGSAPG   F
Sbjct:   13 AGGMAGTAVDVALYPLDTIKTRLQSPEGFVKSGGLRGVYNGLSAAAVGSAPGAALF 68
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A397EZF3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EZF3_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 8.100e-22
Identity = 46/56 (82.14%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGGMAGT VDVALYPLDTIKTRLQS  GFLKAGG +GVY GLSAAA GSAPG   F
Sbjct:    8 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALF 63
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A3R7D5F1_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7D5F1_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.090e-21
Identity = 46/53 (86.79%), Postives = 47/53 (88.68%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGG 159
            AGGMAGT VDVALYPLDTIKTRLQS  GFLKAGG +GVY GLSAAA GSAPGG
Sbjct:    1 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGG 53
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A7S4AEQ2_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AEQ2_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.050e-20
Identity = 43/56 (76.79%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGGMAGT+VDVAL+P+DT+KTR+QSP GF+KAGG RG+YNGL AAAVGSAPG   F
Sbjct:   27 AGGMAGTSVDVALFPIDTLKTRMQSPQGFVKAGGFRGIYNGLGAAAVGSAPGAALF 82
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A397DY10_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DY10_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.090e-20
Identity = 46/56 (82.14%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGGMAGT VDVALYPLDTIKTRLQS  GFLKAGG +GVY GLSAAA GSAPG   F
Sbjct:    1 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALF 56
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A7S2R0Q8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R0Q8_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 2.130e-20
Identity = 45/56 (80.36%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGG AGT+VDV+LYP+DTIKTRLQSP GFLKAGG RGVYNGL AAA+GSAPG   F
Sbjct:   24 AGGCAGTSVDVSLYPIDTIKTRLQSPSGFLKAGGFRGVYNGLGAAALGSAPGAALF 79
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A024U5F9_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024U5F9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.410e-20
Identity = 46/56 (82.14%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGGMAGT VDVALYPLDTIKTRLQS  GFLKAGG +GVY GLSAAA GSAPG   F
Sbjct:   18 AGGMAGTGVDVALYPLDTIKTRLQSSQGFLKAGGFKGVYKGLSAAAAGSAPGAALF 73
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A7S0HCV9_9CRYP (Hypothetical protein (Fragment) n=2 Tax=Geminigeraceae TaxID=589343 RepID=A0A7S0HCV9_9CRYP)

HSP 1 Score: 85.9 bits (211), Expect = 5.400e-20
Identity = 42/56 (75.00%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGG AGTAVDVAL+P+DTIKTRLQSP GF+ AGG +GVYNGL++AA GSAPG   F
Sbjct:   17 AGGCAGTAVDVALFPIDTIKTRLQSPQGFMAAGGFKGVYNGLASAAAGSAPGAALF 72
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A1E7ET07_9STRA (Mitochondrial carrier protein PET8 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7ET07_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 5.450e-20
Identity = 41/56 (73.21%), Postives = 50/56 (89.29%), Query Frame = 1 
Query:    1 AGGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            AGG+AGT+VDVAL+P+DT+KTR+QSP GF+KAGG RG+YNGL AAA+GSAPG   F
Sbjct:   37 AGGLAGTSVDVALFPIDTLKTRMQSPQGFIKAGGFRGIYNGLGAAAIGSAPGAALF 92
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BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Match: A0A835YJ97_9STRA (Mitochondrial carrier domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ97_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 5.710e-20
Identity = 44/55 (80.00%), Postives = 49/55 (89.09%), Query Frame = 1 
Query:    4 GGMAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGGVCF 168
            GG+AGT+VDVAL+PLDTIKTRLQS  GF+KAGG +GVYNGLSAAAVGSAPG   F
Sbjct:   14 GGIAGTSVDVALFPLDTIKTRLQSSQGFIKAGGFKGVYNGLSAAAVGSAPGAAAF 68
The following BLAST results are available for this feature:
BLAST of mRNA_S-dermatodea_contig11940.1215.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LFT9_ECTSI2.200e-2389.29Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A397EZF3_9STRA8.100e-2282.14Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A3R7D5F1_9STRA3.090e-2186.79Uncharacterized protein (Fragment) n=1 Tax=Aphanom... [more]
A0A7S4AEQ2_9STRA2.050e-2076.79Hypothetical protein n=1 Tax=Pseudo-nitzschia aust... [more]
A0A397DY10_9STRA2.090e-2082.14Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]
A0A7S2R0Q8_9STRA2.130e-2080.36Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A024U5F9_9STRA4.410e-2082.14Uncharacterized protein n=9 Tax=Aphanomyces TaxID=... [more]
A0A7S0HCV9_9CRYP5.400e-2075.00Hypothetical protein (Fragment) n=2 Tax=Geminigera... [more]
A0A1E7ET07_9STRA5.450e-2073.21Mitochondrial carrier protein PET8 n=1 Tax=Fragila... [more]
A0A835YJ97_9STRA5.710e-2080.00Mitochondrial carrier domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-dermatodea_contig11940contigS-dermatodea_contig11940:857..1024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Saccorhiza dermatodea SderLu1190fm monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue6.7e-17
Seed eggNOG ortholog2880.D8LFT9
Preferred nameSLC25A26
KEGG koko:K15111
KEGG TC2.A.29.18
GOsGO:0000095,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006810,GO:0006811,GO:0006839,GO:0006855,GO:0008150,GO:0015238,GO:0015805,GO:0015893,GO:0016020,GO:0016021,GO:0019866,GO:0022857,GO:0031090,GO:0031224,GO:0031966,GO:0031967,GO:0031975,GO:0042221,GO:0042493,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051179,GO:0051181,GO:0051182,GO:0051184,GO:0051185,GO:0051234,GO:0055085,GO:0071702,GO:0072348,GO:1901682,GO:1901962
EggNOG free text desc.S-adenosyl-L-methionine transmembrane transport
EggNOG OGsKOG0768@1,KOG0768@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size159
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.1735115-CDS-S-dermatodea_contig11940:856..10151622924224.1735115-CDS-S-dermatodea_contig11940:856..1015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11940 857..1015 -
1694079106.277555-CDS-S-dermatodea_contig11940:856..10151694079106.277555-CDS-S-dermatodea_contig11940:856..1015Saccorhiza dermatodea SderLu1190fm monoicousCDSS-dermatodea_contig11940 857..1015 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622924224.1902459-UTR-S-dermatodea_contig11940:1015..10241622924224.1902459-UTR-S-dermatodea_contig11940:1015..1024Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11940 1016..1024 -
1694079106.287688-UTR-S-dermatodea_contig11940:1015..10241694079106.287688-UTR-S-dermatodea_contig11940:1015..1024Saccorhiza dermatodea SderLu1190fm monoicousUTRS-dermatodea_contig11940 1016..1024 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-dermatodea_contig11940.1215.1prot_S-dermatodea_contig11940.1215.1Saccorhiza dermatodea SderLu1190fm monoicouspolypeptideS-dermatodea_contig11940 857..1015 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-dermatodea_contig11940.1215.1

>prot_S-dermatodea_contig11940.1215.1 ID=prot_S-dermatodea_contig11940.1215.1|Name=mRNA_S-dermatodea_contig11940.1215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=polypeptide|length=53bp
MAGTAVDVALYPLDTIKTRLQSPLGFLKAGGLRGVYNGLSAAAVGSAPGG
VCF
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mRNA from alignment at S-dermatodea_contig11940:857..1024-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-dermatodea_contig11940.1215.1 ID=mRNA_S-dermatodea_contig11940.1215.1|Name=mRNA_S-dermatodea_contig11940.1215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=mRNA|length=168bp|location=Sequence derived from alignment at S-dermatodea_contig11940:857..1024- (Saccorhiza dermatodea SderLu1190fm monoicous)
GCCGGCGGTATGGCAGGCACGGCGGTAGACGTGGCGCTGTACCCGCTGGA
TACGATTAAGACCAGGCTGCAGTCTCCCTTGGGGTTCCTGAAGGCGGGAG
GCCTGCGGGGGGTTTACAACGGCTTGAGCGCCGCGGCAGTGGGCTCCGCT
CCCGGAGGTGTGTGTTTT
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Coding sequence (CDS) from alignment at S-dermatodea_contig11940:857..1024-

>mRNA_S-dermatodea_contig11940.1215.1 ID=mRNA_S-dermatodea_contig11940.1215.1|Name=mRNA_S-dermatodea_contig11940.1215.1|organism=Saccorhiza dermatodea SderLu1190fm monoicous|type=CDS|length=318bp|location=Sequence derived from alignment at S-dermatodea_contig11940:857..1024- (Saccorhiza dermatodea SderLu1190fm monoicous)
ATGGCAGGCACGGCGGTAGACGTGGCGCTGTACCCGCTGGATACGATTAA
GACCAGGCTGCAGTCTCCCTTGGGGTTCCTGAAGGCGGGAGGCCTGCGGG
GGGTTTACAACGGCTTGAGCGCCGCGGCAGTGGGCTCCGCTCCCGGAGGT
GTGTGTTTTATGGCAGGCACGGCGGTAGACGTGGCGCTGTACCCGCTGGA
TACGATTAAGACCAGGCTGCAGTCTCCCTTGGGGTTCCTGAAGGCGGGAG
GCCTGCGGGGGGTTTACAACGGCTTGAGCGCCGCGGCAGTGGGCTCCGCT
CCCGGAGGTGTGTGTTTT
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